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(Created page with "{{f5samples |id=FF:11458-119A9 |name=Fibroblast - Dermal, donor6 |sample_id=11458 |rna_tube_id=119A9 |rna_box=119 |rna_position=A9 |sample_cell_lot=N/A |sample_cell_ca...")
 
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{{f5samples
{{f5samples
|id=FF:11458-119A9
|DRA_sample_Accession=CAGE@SAMD00005619
|name=Fibroblast - Dermal, donor6
|accession_numbers=CAGE;DRX008259;DRR009131;DRZ000556;DRZ001941;DRZ011906;DRZ013291
|sample_id=11458
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416
|rna_tube_id=119A9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551
|rna_box=119
|rna_position=A9
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=4828.00000
|rna_catalog_number=SC2305
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=skin
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.64000
|sample_note=
|profile_hcage=CNhs12059,LSID838,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002551,CL:0002620
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002067,UBERON:0002097,UBERON:0002199,UBERON:0002329,UBERON:0002384,UBERON:0002416,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003102,UBERON:0003104,UBERON:0004016,UBERON:0004120,UBERON:0004290,UBERON:0004923,UBERON:0005291,UBERON:0005423,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000062
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.79!162.22!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!1.64!57.87!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!40.45!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.54!963.35!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.54!86.94!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.48!131.18!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.43!25.84!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!1.42!28.93!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.39!23.46!IRX2;;chr12:66218183..66218209,+!p4@HMGA2!1.38!43.54!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.37!32.02!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.37!22.33!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.33!34.27!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.27!22.33!TFAP2C;;chr2:239756671..239756732,+!p1@TWIST2!1.25!52.81!TWIST2;;chr17:46675558..46675577,-!p2@HOXB6!1.24!16.43!HOXB6;;chr2:239756739..239756755,+!p2@TWIST2!1.23!26.97!TWIST2;;chr2:102091566..102091581,-!p1@RFX8!1.19!14.47!RFX8;;chr6:85474299..85474324,-!p1@TBX18!1.17!24.72!TBX18;;chr2:5832508..5832524,+!p1@SOX11!1.12!12.22!SOX11;;chr12:66218378..66218401,+!p6@HMGA2!1.09!17.42!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!1.07!12.50!BNC1;;chr12:54402745..54402788,+!p1@HOXC8!1.07!10.81!HOXC8;;chr3:147127142..147127168,+!p1@ZIC1!1.03!9.83!ZIC1;;chr18:52969844..52969895,-!p27@TCF4!1.03!9.69!TCF4;;chr2:176994408..176994492,+!p1@HOXD8!1.02!9.55!HOXD8;;chr18:52969674..52969685,-!p24@TCF4!1.00!8.99!TCF4;;chr17:41622765..41622821,-!p2@ETV4!0.99!13.48!ETV4;;chr12:66218573..66218596,+!p7@HMGA2!0.99!13.34!HMGA2;;chr1:170632137..170632172,+!p10@PRRX1!0.97!8.29!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!0.94!35.53!TOX2;;chr2:223163706..223163730,-!p1@PAX3!0.93!7.44!PAX3;;chr5:3595977..3595999,+!p1@IRX1!0.93!7.44!IRX1;;chr2:19558373..19558392,-!p1@OSR1!0.92!20.51!OSR1;;chr2:200322654..200322707,-!p2@SATB2!0.90!10.39!SATB2;;chr5:158526917..158526932,-!p1@EBF1!0.89!17.70!EBF1;;chr17:46675420..46675465,-!p3@HOXB6!0.89!7.87!HOXB6;;chr17:46682321..46682362,-!p1@HOXB6!0.89!6.74!HOXB6;;chr12:66218420..66218439,+!p12@HMGA2!0.89!6.74!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.89!6.74!PRRX1;;chr17:41623009..41623053,-!p4@ETV4!0.88!10.96!ETV4;;chr1:170632477..170632506,+!p6@PRRX1!0.88!6.60!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.88!6.60!KDM5D;;chr12:66218469..66218477,+!p16@HMGA2!0.87!6.46!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.86!35.11!ETV1;;chr3:12329358..12329393,+!p3@PPARG!0.86!16.15!PPARG;;chr20:42543506..42543549,+!p2@TOX2!0.86!15.59!TOX2;;chr12:54447637..54447659,+!p4@HOXC4!0.86!6.32!HOXC4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.84!6.32!GLIS1;;chr1:170632439..170632465,+!p11@PRRX1!0.84!5.90!PRRX1;;chr12:2986206..2986258,-!p2@FOXM1!0.83!37.22!FOXM1;;chr11:65686802..65686818,+!p6@DRAP1!0.83!10.39!DRAP1;;chr5:2751785..2751808,-!p2@IRX2!0.83!5.76!IRX2;;chr16:86544113..86544145,+!p1@FOXF1!0.82!7.16!FOXF1;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.86!DRAP1;;chr17:46622205..46622218,-!p3@HOXB2!0.81!6.32!HOXB2;;chr12:66218152..66218174,+!p10@HMGA2!0.81!5.90!HMGA2;;chr2:119605214..119605230,-!p1@EN1!0.81!5.48!EN1;;chr3:157823517..157823562,-!p1@SHOX2!0.80!5.76!SHOX2;;chr17:46671108..46671147,-!p1@HOXB5!0.80!5.34!HOXB5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.80!5.34!RUNX1T1;;chr1:170632723..170632739,+!p8@PRRX1!0.80!5.34!PRRX1;;chr17:46687959..46688007,-!p2@HOXB7!0.79!7.30!HOXB7;;chr12:66218443..66218461,+!p8@HMGA2!0.79!6.74!HMGA2;;chr12:54379029..54379057,+!p2@HOXC10!0.78!5.06!HOXC10;;chr1:170632115..170632136,+!p9@PRRX1!0.78!5.06!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!0.77!4.92!EMX2;;chr3:147111231..147111281,+!p3@ZIC1!0.77!4.92!ZIC1;;chr11:65667846..65667868,-!p1@FOSL1!0.76!139.05!FOSL1;;chr19:42636586..42636607,-!p1@POU2F2!0.76!14.19!POU2F2;;chr17:46667594..46667619,-!p1@HOXB3!0.76!4.78!HOXB3;;chr17:46667628..46667642,-!p2@HOXB3!0.76!4.78!HOXB3;;chr17:41277372..41277418,-!p1@BRCA1!0.75!18.12!BRCA1;;chr17:46622114..46622138,-!p4@HOXB2!0.75!7.44!HOXB2;;chr17:46675539..46675551,-!p7@HOXB6!0.75!4.63!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.75!4.63!HOXB8;;chr12:54422217..54422239,+!p3@HOXC6!0.75!4.63!HOXC6;;chr4:299227..299272,-!p1@ZNF732!0.75!4.63!ZNF732;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.74!22.61!TAL1;;chr5:321810..321877,+!p1@AHRR!0.74!15.59!AHRR;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr17:46675586..46675600,-!p6@HOXB6!0.74!4.49!HOXB6;;chr4:4861385..4861398,+!p1@MSX1!0.73!14.19!MSX1;;chr3:12329397..12329433,+!p2@PPARG!0.73!10.81!PPARG;;chr12:54378923..54378966,+!p1@HOXC10!0.73!4.35!HOXC10;;chr17:41623692..41623715,-!p1@ETV4!0.72!20.22!ETV4;;chr12:66358080..66358094,+!p15@HMGA2!0.72!4.21!HMGA2;;chr19:22817119..22817145,+!p1@ZNF492!0.71!7.30!ZNF492;;chr5:3595961..3595975,+!p3@IRX1!0.71!4.07!IRX1;;chr12:96588143..96588185,+!p1@ELK3!0.70!55.90!ELK3;;chr6:31126291..31126399,+!p1@TCF19!0.70!43.40!TCF19;;chr5:72744594..72744609,-!p1@FOXD1!0.70!20.79!FOXD1;;chr17:46622070..46622109,-!p1@HOXB2!0.70!9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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor6.CNhs12059.11458-119A9.hg38.nobarcode.ctss.bed.gz
|id=FF:11458-119A9
|is_a=EFO:0002091;;FF:0000062
|is_obsolete=
|library_id=CNhs12059
|library_id_phase_based=2:CNhs12059
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11458
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11458
|name=Fibroblast - Dermal, donor6
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12059,LSID838,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=119
|rna_catalog_number=SC2305
|rna_concentration=0.64
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=4828
|rna_od260/230=
|rna_od260/280=
|rna_position=A9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=119A9
|rna_weight_ug=10
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=fibroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.13386606867131e-281!GO:0043226;organelle;2.5023470823282e-231!GO:0043229;intracellular organelle;6.87427090900436e-231!GO:0043231;intracellular membrane-bound organelle;1.89247533117687e-227!GO:0043227;membrane-bound organelle;2.07910576956561e-227!GO:0005737;cytoplasm;2.18451784183171e-184!GO:0044422;organelle part;8.46256601403792e-171!GO:0044446;intracellular organelle part;5.07802140978699e-169!GO:0044444;cytoplasmic part;6.2058796628442e-127!GO:0032991;macromolecular complex;8.04594640958767e-120!GO:0044237;cellular metabolic process;3.84561721172461e-109!GO:0005634;nucleus;4.20853465041762e-109!GO:0044238;primary metabolic process;1.80528755520667e-108!GO:0030529;ribonucleoprotein complex;7.96925784511912e-104!GO:0043170;macromolecule metabolic process;6.16474701176828e-101!GO:0044428;nuclear part;4.25858140042027e-91!GO:0043233;organelle lumen;2.60228244186138e-86!GO:0031974;membrane-enclosed lumen;2.60228244186138e-86!GO:0003723;RNA binding;2.19683408465416e-82!GO:0005739;mitochondrion;2.40486035449566e-74!GO:0005515;protein binding;6.17521268547662e-69!GO:0043283;biopolymer metabolic process;1.98636679563128e-62!GO:0005840;ribosome;8.18283972375703e-62!GO:0006396;RNA processing;3.79517786979449e-61!GO:0043234;protein complex;5.45903177823884e-60!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.5562732603738e-59!GO:0006412;translation;9.69181278361566e-56!GO:0010467;gene expression;1.92792719771733e-55!GO:0003735;structural constituent of ribosome;2.3090937324586e-54!GO:0016043;cellular component organization and biogenesis;6.991524510079e-53!GO:0031981;nuclear lumen;7.97291512688771e-53!GO:0044429;mitochondrial part;1.07822634592827e-50!GO:0031090;organelle membrane;5.32766861423278e-50!GO:0019538;protein metabolic process;1.62878728088948e-48!GO:0043228;non-membrane-bound organelle;1.42521354111873e-47!GO:0043232;intracellular non-membrane-bound organelle;1.42521354111873e-47!GO:0031967;organelle envelope;2.20406096492266e-47!GO:0031975;envelope;6.13732584816287e-47!GO:0033279;ribosomal subunit;3.11132212419294e-46!GO:0009058;biosynthetic process;5.70649725013444e-46!GO:0016071;mRNA metabolic process;5.03373011377169e-45!GO:0006259;DNA metabolic process;1.00414729541334e-43!GO:0044249;cellular biosynthetic process;1.52429950982736e-43!GO:0044260;cellular macromolecule metabolic process;3.30635334171608e-43!GO:0044267;cellular protein metabolic process;5.4606556940896e-43!GO:0006996;organelle organization and biogenesis;1.61352698805393e-42!GO:0008380;RNA splicing;4.16763479962039e-42!GO:0015031;protein transport;4.65905665479282e-42!GO:0033036;macromolecule localization;1.01668540619325e-41!GO:0005829;cytosol;1.17280952423164e-41!GO:0009059;macromolecule biosynthetic process;2.81070811325967e-41!GO:0006397;mRNA processing;4.22080371069802e-39!GO:0003676;nucleic acid binding;5.81063057721902e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.28789945905392e-38!GO:0045184;establishment of protein localization;3.28521634742895e-38!GO:0008104;protein localization;8.64213150862751e-38!GO:0065003;macromolecular complex assembly;2.2689022990878e-36!GO:0046907;intracellular transport;2.90805110270079e-36!GO:0007049;cell cycle;4.97683042943957e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.30548933212174e-33!GO:0022607;cellular component assembly;1.69052513792993e-32!GO:0005654;nucleoplasm;4.13667441442404e-32!GO:0005740;mitochondrial envelope;1.44916843558317e-31!GO:0005681;spliceosome;6.11620385832164e-30!GO:0006886;intracellular protein transport;6.86648303611101e-30!GO:0031966;mitochondrial membrane;2.33350976469447e-29!GO:0000166;nucleotide binding;3.83466695027293e-29!GO:0019866;organelle inner membrane;2.70198099264745e-28!GO:0000278;mitotic cell cycle;7.98520605134466e-28!GO:0022402;cell cycle process;1.0724486209618e-26!GO:0016070;RNA metabolic process;1.98092422486099e-26!GO:0006974;response to DNA damage stimulus;3.09221353616901e-26!GO:0005694;chromosome;3.17620284880414e-26!GO:0005743;mitochondrial inner membrane;4.45970816428905e-26!GO:0044445;cytosolic part;4.90145514932723e-26!GO:0044451;nucleoplasm part;1.44502522671917e-25!GO:0015934;large ribosomal subunit;1.00823000692473e-23!GO:0044427;chromosomal part;1.11127911632986e-23!GO:0015935;small ribosomal subunit;1.23223430065307e-23!GO:0022403;cell cycle phase;1.90964876032927e-23!GO:0016462;pyrophosphatase activity;4.11124302705914e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.33158690330771e-23!GO:0031980;mitochondrial lumen;6.48117937184363e-23!GO:0005759;mitochondrial matrix;6.48117937184363e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;9.21759597639154e-23!GO:0000087;M phase of mitotic cell cycle;1.01380226770952e-22!GO:0006119;oxidative phosphorylation;1.02868470470878e-22!GO:0051649;establishment of cellular localization;1.55658311555828e-22!GO:0006281;DNA repair;1.70321136671042e-22!GO:0051641;cellular localization;2.15534052885243e-22!GO:0017111;nucleoside-triphosphatase activity;2.17061019032459e-22!GO:0007067;mitosis;2.97130799390916e-22!GO:0005730;nucleolus;1.29285619877989e-21!GO:0044455;mitochondrial membrane part;2.07259817907507e-21!GO:0012505;endomembrane system;2.63069771309379e-21!GO:0006457;protein folding;1.31264773580828e-20!GO:0051301;cell division;1.70785382440313e-20!GO:0022618;protein-RNA complex assembly;3.05602677577941e-20!GO:0017076;purine nucleotide binding;4.99241586438182e-20!GO:0032553;ribonucleotide binding;5.74568370926978e-20!GO:0032555;purine ribonucleotide binding;5.74568370926978e-20!GO:0000279;M phase;7.17404643847297e-20!GO:0016874;ligase activity;1.49916351019516e-19!GO:0051276;chromosome organization and biogenesis;2.29784661341552e-19!GO:0006260;DNA replication;3.38986280880167e-19!GO:0042254;ribosome biogenesis and assembly;5.49577128571716e-19!GO:0009719;response to endogenous stimulus;1.30014820332403e-18!GO:0005524;ATP binding;3.04276245379435e-18!GO:0006512;ubiquitin cycle;3.74778013292659e-18!GO:0005761;mitochondrial ribosome;8.10925402380153e-18!GO:0000313;organellar ribosome;8.10925402380153e-18!GO:0048770;pigment granule;9.37289457159787e-18!GO:0042470;melanosome;9.37289457159787e-18!GO:0005746;mitochondrial respiratory chain;1.07169658854348e-17!GO:0032559;adenyl ribonucleotide binding;1.09647010434863e-17!GO:0008135;translation factor activity, nucleic acid binding;1.19804163171118e-17!GO:0030554;adenyl nucleotide binding;1.45633230908955e-17!GO:0044265;cellular macromolecule catabolic process;3.36191282262772e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.14707966559753e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.67625729606976e-17!GO:0043285;biopolymer catabolic process;9.54359505423633e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.02161237810747e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.57737119181192e-16!GO:0019941;modification-dependent protein catabolic process;1.63583468964989e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.63583468964989e-16!GO:0005635;nuclear envelope;1.81145856139968e-16!GO:0051186;cofactor metabolic process;2.38011298204323e-16!GO:0044257;cellular protein catabolic process;2.99698896296059e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;3.05540063415496e-16!GO:0000375;RNA splicing, via transesterification reactions;3.05540063415496e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.05540063415496e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.30042709703105e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.31631355767866e-16!GO:0003954;NADH dehydrogenase activity;4.31631355767866e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.31631355767866e-16!GO:0000502;proteasome complex (sensu Eukaryota);7.21575505093681e-16!GO:0005783;endoplasmic reticulum;7.9376149128368e-16!GO:0044453;nuclear membrane part;1.28333214386308e-15!GO:0031965;nuclear membrane;1.97353833497398e-15!GO:0009057;macromolecule catabolic process;2.03905363852548e-15!GO:0006605;protein targeting;2.75343260472236e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.698690495174e-14!GO:0042773;ATP synthesis coupled electron transport;1.698690495174e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;2.14530192663149e-14!GO:0030163;protein catabolic process;2.19035154173246e-14!GO:0030964;NADH dehydrogenase complex (quinone);3.01548406458632e-14!GO:0045271;respiratory chain complex I;3.01548406458632e-14!GO:0005747;mitochondrial respiratory chain complex I;3.01548406458632e-14!GO:0044432;endoplasmic reticulum part;4.00273965052527e-14!GO:0048193;Golgi vesicle transport;5.69624462543399e-14!GO:0003743;translation initiation factor activity;6.43664245380486e-14!GO:0044248;cellular catabolic process;7.32080637462646e-14!GO:0006323;DNA packaging;7.99954024886636e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.18594859848988e-14!GO:0008134;transcription factor binding;1.08073223897545e-13!GO:0051082;unfolded protein binding;1.31475811398259e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.80984291928457e-13!GO:0006399;tRNA metabolic process;1.92193024188262e-13!GO:0043412;biopolymer modification;2.68652668698732e-13!GO:0005643;nuclear pore;4.0292336490968e-13!GO:0005794;Golgi apparatus;4.9305417221352e-13!GO:0006413;translational initiation;7.48753218748976e-13!GO:0004386;helicase activity;7.84270761024055e-13!GO:0016887;ATPase activity;8.55265153794107e-13!GO:0006364;rRNA processing;9.43903007979152e-13!GO:0042623;ATPase activity, coupled;1.01518136383321e-12!GO:0016604;nuclear body;1.12773040794278e-12!GO:0006732;coenzyme metabolic process;1.6605162232693e-12!GO:0016072;rRNA metabolic process;3.93999269626309e-12!GO:0065004;protein-DNA complex assembly;6.10809921188561e-12!GO:0000785;chromatin;6.16586583466482e-12!GO:0051726;regulation of cell cycle;1.30886786659881e-11!GO:0015630;microtubule cytoskeleton;1.32370314012979e-11!GO:0000074;regulation of progression through cell cycle;1.3264347018271e-11!GO:0065002;intracellular protein transport across a membrane;1.36916218580317e-11!GO:0006464;protein modification process;1.83796453201938e-11!GO:0006913;nucleocytoplasmic transport;1.94442958927443e-11!GO:0005793;ER-Golgi intermediate compartment;2.17678568864101e-11!GO:0009055;electron carrier activity;2.31520289437549e-11!GO:0009259;ribonucleotide metabolic process;2.40939318134274e-11!GO:0006333;chromatin assembly or disassembly;2.47370443838846e-11!GO:0050657;nucleic acid transport;2.89012120044968e-11!GO:0051236;establishment of RNA localization;2.89012120044968e-11!GO:0050658;RNA transport;2.89012120044968e-11!GO:0046930;pore complex;3.43482318334115e-11!GO:0006403;RNA localization;3.75343060063477e-11!GO:0051169;nuclear transport;4.64298838534707e-11!GO:0000775;chromosome, pericentric region;8.06520581800677e-11!GO:0008026;ATP-dependent helicase activity;8.24000531249742e-11!GO:0006163;purine nucleotide metabolic process;8.84576403608239e-11!GO:0006446;regulation of translational initiation;1.0655822885523e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.66197236773904e-10!GO:0009150;purine ribonucleotide metabolic process;4.81780450771557e-10!GO:0008565;protein transporter activity;4.85624698137369e-10!GO:0043687;post-translational protein modification;4.85946424932942e-10!GO:0016607;nuclear speck;5.5768608308597e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.50731355738173e-10!GO:0004812;aminoacyl-tRNA ligase activity;6.50731355738173e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.50731355738173e-10!GO:0008639;small protein conjugating enzyme activity;7.22762023424587e-10!GO:0009260;ribonucleotide biosynthetic process;7.7995426782572e-10!GO:0030532;small nuclear ribonucleoprotein complex;8.28796861172847e-10!GO:0005789;endoplasmic reticulum membrane;8.37965778306299e-10!GO:0006164;purine nucleotide biosynthetic process;9.48592017291091e-10!GO:0016192;vesicle-mediated transport;1.34160702242835e-09!GO:0005819;spindle;1.38831928007744e-09!GO:0003697;single-stranded DNA binding;1.45883528335298e-09!GO:0043038;amino acid activation;1.57594626295709e-09!GO:0006418;tRNA aminoacylation for protein translation;1.57594626295709e-09!GO:0043039;tRNA aminoacylation;1.57594626295709e-09!GO:0051028;mRNA transport;1.63854840102784e-09!GO:0006261;DNA-dependent DNA replication;1.72126698736719e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.8107091796935e-09!GO:0004842;ubiquitin-protein ligase activity;1.8140104594505e-09!GO:0006334;nucleosome assembly;2.01339242515986e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.02795979473435e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.12383190064979e-09!GO:0009060;aerobic respiration;3.33417943675697e-09!GO:0006461;protein complex assembly;3.33507664294799e-09!GO:0043566;structure-specific DNA binding;3.36938979605854e-09!GO:0016779;nucleotidyltransferase activity;3.56834911072718e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.93353686486867e-09!GO:0019787;small conjugating protein ligase activity;5.15660806083569e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.53318529227527e-09!GO:0050794;regulation of cellular process;5.68906808582303e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.28469416759072e-09!GO:0031497;chromatin assembly;6.59028658739093e-09!GO:0009141;nucleoside triphosphate metabolic process;6.77799414077857e-09!GO:0005813;centrosome;6.98124286613643e-09!GO:0003712;transcription cofactor activity;7.57647874279716e-09!GO:0006888;ER to Golgi vesicle-mediated transport;8.58263629767835e-09!GO:0016740;transferase activity;8.89342906180364e-09!GO:0017038;protein import;1.11941217231284e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.30020285875114e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.30020285875114e-08!GO:0045333;cellular respiration;1.54882555970779e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.7056841742759e-08!GO:0051188;cofactor biosynthetic process;2.04800101124416e-08!GO:0005815;microtubule organizing center;2.15308750422916e-08!GO:0051329;interphase of mitotic cell cycle;3.64974256335022e-08!GO:0006366;transcription from RNA polymerase II promoter;4.14010286450824e-08!GO:0016881;acid-amino acid ligase activity;5.83761967471268e-08!GO:0006099;tricarboxylic acid cycle;6.05618702688969e-08!GO:0046356;acetyl-CoA catabolic process;6.05618702688969e-08!GO:0009056;catabolic process;6.23139972682089e-08!GO:0030120;vesicle coat;6.7496693413337e-08!GO:0030662;coated vesicle membrane;6.7496693413337e-08!GO:0005657;replication fork;7.5887608240078e-08!GO:0046034;ATP metabolic process;7.95726350989349e-08!GO:0005667;transcription factor complex;8.98151637723725e-08!GO:0051325;interphase;9.38662974351876e-08!GO:0003899;DNA-directed RNA polymerase activity;9.72470920908163e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.0327076200743e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.0327076200743e-07!GO:0015986;ATP synthesis coupled proton transport;1.0327076200743e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.0327076200743e-07!GO:0007051;spindle organization and biogenesis;1.03719980665774e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.2225408587328e-07!GO:0007005;mitochondrion organization and biogenesis;1.4319081531087e-07!GO:0006084;acetyl-CoA metabolic process;1.51834362061933e-07!GO:0009117;nucleotide metabolic process;1.64092333015162e-07!GO:0009109;coenzyme catabolic process;1.83121856658567e-07!GO:0016568;chromatin modification;1.98207468895678e-07!GO:0008094;DNA-dependent ATPase activity;2.17251395454259e-07!GO:0012501;programmed cell death;2.30436770376997e-07!GO:0019829;cation-transporting ATPase activity;2.46578992482327e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.47086351542866e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.47086351542866e-07!GO:0051187;cofactor catabolic process;3.37067325888041e-07!GO:0048475;coated membrane;3.44214561504024e-07!GO:0030117;membrane coat;3.44214561504024e-07!GO:0006915;apoptosis;3.48038374326756e-07!GO:0000075;cell cycle checkpoint;4.10388473293105e-07!GO:0000245;spliceosome assembly;4.19284019529411e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.19284019529411e-07!GO:0003924;GTPase activity;6.69106619826966e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.34269038390998e-07!GO:0005762;mitochondrial large ribosomal subunit;7.49246970395863e-07!GO:0000315;organellar large ribosomal subunit;7.49246970395863e-07!GO:0032446;protein modification by small protein conjugation;8.54455965642837e-07!GO:0016567;protein ubiquitination;1.32460313226822e-06!GO:0006754;ATP biosynthetic process;1.4305002092226e-06!GO:0006753;nucleoside phosphate metabolic process;1.4305002092226e-06!GO:0045259;proton-transporting ATP synthase complex;1.44708066729943e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.47786669512057e-06!GO:0019222;regulation of metabolic process;1.48036152144349e-06!GO:0000151;ubiquitin ligase complex;1.56624760683377e-06!GO:0009108;coenzyme biosynthetic process;1.57754752364694e-06!GO:0005788;endoplasmic reticulum lumen;1.64668913877912e-06!GO:0044431;Golgi apparatus part;2.05053558149318e-06!GO:0043623;cellular protein complex assembly;2.07804034996395e-06!GO:0016853;isomerase activity;2.09970513986579e-06!GO:0008219;cell death;2.26298030524172e-06!GO:0016265;death;2.26298030524172e-06!GO:0016491;oxidoreductase activity;2.69600658575877e-06!GO:0006752;group transfer coenzyme metabolic process;2.95078854847892e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.16286815657186e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.23572983729575e-06!GO:0008654;phospholipid biosynthetic process;4.05786592448668e-06!GO:0051170;nuclear import;4.23545983971523e-06!GO:0048523;negative regulation of cellular process;4.60582716636211e-06!GO:0005768;endosome;4.85906211440199e-06!GO:0005798;Golgi-associated vesicle;5.85462403120258e-06!GO:0016859;cis-trans isomerase activity;5.90966016174398e-06!GO:0019843;rRNA binding;6.36202364373153e-06!GO:0006613;cotranslational protein targeting to membrane;6.71574718996903e-06!GO:0006302;double-strand break repair;6.77952803849321e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.15057882259165e-06!GO:0051246;regulation of protein metabolic process;7.37942429083604e-06!GO:0006606;protein import into nucleus;8.0690130070885e-06!GO:0003724;RNA helicase activity;8.14143293533335e-06!GO:0006793;phosphorus metabolic process;8.48741975844557e-06!GO:0006796;phosphate metabolic process;8.48741975844557e-06!GO:0000314;organellar small ribosomal subunit;9.45122862274572e-06!GO:0005763;mitochondrial small ribosomal subunit;9.45122862274572e-06!GO:0007059;chromosome segregation;1.15945314449407e-05!GO:0016787;hydrolase activity;1.34905892285145e-05!GO:0007010;cytoskeleton organization and biogenesis;1.35981491798032e-05!GO:0000776;kinetochore;1.57250522136677e-05!GO:0031252;leading edge;2.07692943377257e-05!GO:0050789;regulation of biological process;2.36992220956184e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.37353145209575e-05!GO:0008033;tRNA processing;2.37641610643393e-05!GO:0006091;generation of precursor metabolites and energy;2.37641610643393e-05!GO:0016126;sterol biosynthetic process;2.54837692931364e-05!GO:0006310;DNA recombination;2.61475003360689e-05!GO:0005525;GTP binding;2.66890304799383e-05!GO:0044440;endosomal part;2.70736388904274e-05!GO:0010008;endosome membrane;2.70736388904274e-05!GO:0043021;ribonucleoprotein binding;3.17218175578091e-05!GO:0004298;threonine endopeptidase activity;3.34523940495168e-05!GO:0003684;damaged DNA binding;3.46013206314716e-05!GO:0016563;transcription activator activity;3.77793618394375e-05!GO:0031324;negative regulation of cellular metabolic process;4.08856036708619e-05!GO:0044452;nucleolar part;4.12799906768752e-05!GO:0003713;transcription coactivator activity;4.14021351254314e-05!GO:0000786;nucleosome;4.61098815897041e-05!GO:0045454;cell redox homeostasis;4.64663670150325e-05!GO:0000139;Golgi membrane;4.76886076117915e-05!GO:0016741;transferase activity, transferring one-carbon groups;5.45302605672408e-05!GO:0051427;hormone receptor binding;5.58933559295702e-05!GO:0016310;phosphorylation;5.71390690331341e-05!GO:0008168;methyltransferase activity;5.87830934646181e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.95836568597906e-05!GO:0016363;nuclear matrix;6.43271513696763e-05!GO:0030867;rough endoplasmic reticulum membrane;6.54195041339573e-05!GO:0000059;protein import into nucleus, docking;7.69832484864059e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.01468753707204e-05!GO:0031968;organelle outer membrane;8.33896461708768e-05!GO:0006383;transcription from RNA polymerase III promoter;8.39230714214432e-05!GO:0003682;chromatin binding;8.77869131147611e-05!GO:0051052;regulation of DNA metabolic process;8.90390353147242e-05!GO:0051168;nuclear export;9.14168606655336e-05!GO:0005769;early endosome;9.35615037646875e-05!GO:0048519;negative regulation of biological process;9.45965419194523e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;9.46614440363799e-05!GO:0019867;outer membrane;0.000104543690104677!GO:0035257;nuclear hormone receptor binding;0.000121087162911077!GO:0006626;protein targeting to mitochondrion;0.000123275740402591!GO:0031323;regulation of cellular metabolic process;0.000123305392257456!GO:0007088;regulation of mitosis;0.000128890781217775!GO:0031988;membrane-bound vesicle;0.000128931379853373!GO:0009165;nucleotide biosynthetic process;0.000145260331841724!GO:0006916;anti-apoptosis;0.000149095226867062!GO:0003690;double-stranded DNA binding;0.000150219484374204!GO:0045786;negative regulation of progression through cell cycle;0.000150802178284337!GO:0003678;DNA helicase activity;0.000158325688190806!GO:0005874;microtubule;0.000166384652682122!GO:0007093;mitotic cell cycle checkpoint;0.000166384652682122!GO:0007052;mitotic spindle organization and biogenesis;0.000174612369564881!GO:0016023;cytoplasmic membrane-bound vesicle;0.000180243327494042!GO:0004527;exonuclease activity;0.000181441356380084!GO:0005048;signal sequence binding;0.000184912712426765!GO:0005791;rough endoplasmic reticulum;0.00018682848164912!GO:0003729;mRNA binding;0.000195617919406403!GO:0019899;enzyme binding;0.000211129112461722!GO:0046474;glycerophospholipid biosynthetic process;0.000217557227482383!GO:0006695;cholesterol biosynthetic process;0.000229260484639614!GO:0043681;protein import into mitochondrion;0.000239233720802068!GO:0006612;protein targeting to membrane;0.000245675667151688!GO:0032561;guanyl ribonucleotide binding;0.000248453847538782!GO:0019001;guanyl nucleotide binding;0.000248453847538782!GO:0006350;transcription;0.000249764099534367!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000319006697159238!GO:0008186;RNA-dependent ATPase activity;0.000354167013770418!GO:0051252;regulation of RNA metabolic process;0.000355914272393339!GO:0043069;negative regulation of programmed cell death;0.000358061114789973!GO:0005741;mitochondrial outer membrane;0.000368690946649501!GO:0009892;negative regulation of metabolic process;0.000371554527219203!GO:0016564;transcription repressor activity;0.00039270827215788!GO:0004576;oligosaccharyl transferase activity;0.000395137404395108!GO:0043066;negative regulation of apoptosis;0.000434348949807008!GO:0008250;oligosaccharyl transferase complex;0.00045553232541218!GO:0033116;ER-Golgi intermediate compartment membrane;0.000455679978016522!GO:0030880;RNA polymerase complex;0.000462634567070104!GO:0051789;response to protein stimulus;0.000471580076822958!GO:0006986;response to unfolded protein;0.000471580076822958!GO:0007017;microtubule-based process;0.000474989120605054!GO:0006414;translational elongation;0.000479359142846885!GO:0005885;Arp2/3 protein complex;0.000489691904253088!GO:0005684;U2-dependent spliceosome;0.000506364754236474!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000506364754236474!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000509831275735779!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000521798520520296!GO:0005770;late endosome;0.000534608507105023!GO:0042981;regulation of apoptosis;0.000544432563786354!GO:0006839;mitochondrial transport;0.000544432563786354!GO:0051540;metal cluster binding;0.000559828223762893!GO:0051536;iron-sulfur cluster binding;0.000559828223762893!GO:0030133;transport vesicle;0.00057589669217753!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000582347674823787!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000594982703470905!GO:0003714;transcription corepressor activity;0.000617908002390009!GO:0031982;vesicle;0.000663476159879361!GO:0005905;coated pit;0.000666751817952148!GO:0043067;regulation of programmed cell death;0.000668425590509333!GO:0008610;lipid biosynthetic process;0.0007096914264846!GO:0046467;membrane lipid biosynthetic process;0.000718445918500924!GO:0006402;mRNA catabolic process;0.000724536625700251!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000726789811750888!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000734384804263411!GO:0000082;G1/S transition of mitotic cell cycle;0.000740083803450693!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000764122587177743!GO:0015631;tubulin binding;0.000774416916299236!GO:0030663;COPI coated vesicle membrane;0.000783243651440888!GO:0030126;COPI vesicle coat;0.000783243651440888!GO:0030036;actin cytoskeleton organization and biogenesis;0.000823067245635419!GO:0007006;mitochondrial membrane organization and biogenesis;0.000849643265609959!GO:0051920;peroxiredoxin activity;0.000958980396381699!GO:0004004;ATP-dependent RNA helicase activity;0.000965913821590922!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000967450923335178!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000967450923335178!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000967450923335178!GO:0016481;negative regulation of transcription;0.000969607055259938!GO:0031410;cytoplasmic vesicle;0.000989926671014937!GO:0043596;nuclear replication fork;0.00103805680987062!GO:0000922;spindle pole;0.00104055765440793!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00107953055439282!GO:0000428;DNA-directed RNA polymerase complex;0.00107953055439282!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00108739894349148!GO:0004518;nuclease activity;0.00108911389817878!GO:0031072;heat shock protein binding;0.00109293791476994!GO:0006401;RNA catabolic process;0.00109590387243895!GO:0032508;DNA duplex unwinding;0.00110404104943142!GO:0032392;DNA geometric change;0.00110404104943142!GO:0048500;signal recognition particle;0.0011162100499265!GO:0005876;spindle microtubule;0.00112471798909097!GO:0006891;intra-Golgi vesicle-mediated transport;0.00116956790804786!GO:0000049;tRNA binding;0.00121572445696211!GO:0006275;regulation of DNA replication;0.00123358433286869!GO:0000228;nuclear chromosome;0.00128128948514107!GO:0048471;perinuclear region of cytoplasm;0.00134121986344025!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00134811353766887!GO:0042802;identical protein binding;0.00135812748083338!GO:0018196;peptidyl-asparagine modification;0.0013995503657476!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0013995503657476!GO:0006352;transcription initiation;0.00142244825407808!GO:0008312;7S RNA binding;0.00162609250374442!GO:0030658;transport vesicle membrane;0.00167886390702605!GO:0000910;cytokinesis;0.00169117561750625!GO:0006268;DNA unwinding during replication;0.00169799033242649!GO:0010468;regulation of gene expression;0.0019380400268624!GO:0030137;COPI-coated vesicle;0.00199102332116801!GO:0008139;nuclear localization sequence binding;0.00202630321189542!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00203275292484653!GO:0031124;mRNA 3'-end processing;0.00203616501408196!GO:0035258;steroid hormone receptor binding;0.00203895543874177!GO:0009112;nucleobase metabolic process;0.00205402076127701!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00206555078098049!GO:0051287;NAD binding;0.00214140115768103!GO:0043284;biopolymer biosynthetic process;0.00214651436685361!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00220523332132914!GO:0031570;DNA integrity checkpoint;0.00225265431188388!GO:0046489;phosphoinositide biosynthetic process;0.0024726579527262!GO:0006595;polyamine metabolic process;0.00258713710696206!GO:0030134;ER to Golgi transport vesicle;0.00263417256298714!GO:0008180;signalosome;0.00264083868638444!GO:0043488;regulation of mRNA stability;0.00267896589959852!GO:0043487;regulation of RNA stability;0.00267896589959852!GO:0050662;coenzyme binding;0.00273376806761094!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00289632906661715!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00289632906661715!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00298888742540515!GO:0045047;protein targeting to ER;0.00298888742540515!GO:0005637;nuclear inner membrane;0.00302415196126624!GO:0003677;DNA binding;0.00308359246452867!GO:0032984;macromolecular complex disassembly;0.00316398954502815!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00316614731663178!GO:0006520;amino acid metabolic process;0.00321169992876598!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00329063217343301!GO:0005096;GTPase activator activity;0.00329063217343301!GO:0006289;nucleotide-excision repair;0.00331780932913188!GO:0031901;early endosome membrane;0.00335213991429798!GO:0030127;COPII vesicle coat;0.00337901666124515!GO:0012507;ER to Golgi transport vesicle membrane;0.00337901666124515!GO:0051539;4 iron, 4 sulfur cluster binding;0.00343463713027164!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00378896853081022!GO:0000725;recombinational repair;0.00383630321946398!GO:0000724;double-strand break repair via homologous recombination;0.00383630321946398!GO:0030132;clathrin coat of coated pit;0.00392953937435831!GO:0051087;chaperone binding;0.00393438711529316!GO:0043601;nuclear replisome;0.00395823258089021!GO:0030894;replisome;0.00395823258089021!GO:0046483;heterocycle metabolic process;0.00400371795890909!GO:0030029;actin filament-based process;0.00408599277122735!GO:0001726;ruffle;0.00413971738303177!GO:0004003;ATP-dependent DNA helicase activity;0.00439270822359022!GO:0006144;purine base metabolic process;0.00451282500405199!GO:0006220;pyrimidine nucleotide metabolic process;0.00451282500405199!GO:0004674;protein serine/threonine kinase activity;0.00488456817370431!GO:0006611;protein export from nucleus;0.0050127149896272!GO:0030660;Golgi-associated vesicle membrane;0.00502081417321563!GO:0003711;transcription elongation regulator activity;0.00513049692248327!GO:0006405;RNA export from nucleus;0.00520551816099948!GO:0043624;cellular protein complex disassembly;0.00522270147249533!GO:0030521;androgen receptor signaling pathway;0.00525654425313626!GO:0042770;DNA damage response, signal transduction;0.00533545531133878!GO:0043241;protein complex disassembly;0.00536619326506043!GO:0017166;vinculin binding;0.00542996856808501!GO:0006270;DNA replication initiation;0.00543146839166966!GO:0016272;prefoldin complex;0.00556756953404562!GO:0000070;mitotic sister chromatid segregation;0.00568746901667958!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00573038736403005!GO:0019752;carboxylic acid metabolic process;0.00573197534879118!GO:0000792;heterochromatin;0.00574234190766641!GO:0009116;nucleoside metabolic process;0.00576815022417759!GO:0006284;base-excision repair;0.00588618158936061!GO:0006082;organic acid metabolic process;0.00608210930489328!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00609683938398159!GO:0030118;clathrin coat;0.00621863382639452!GO:0005758;mitochondrial intermembrane space;0.0063274694055798!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00634928111529642!GO:0000819;sister chromatid segregation;0.00650387515824259!GO:0003746;translation elongation factor activity;0.00672143883968561!GO:0008047;enzyme activator activity;0.006872188095663!GO:0016251;general RNA polymerase II transcription factor activity;0.006872188095663!GO:0032774;RNA biosynthetic process;0.00692351652018147!GO:0000339;RNA cap binding;0.00717988313347118!GO:0008652;amino acid biosynthetic process;0.00721213166482482!GO:0032200;telomere organization and biogenesis;0.00751120122560019!GO:0000723;telomere maintenance;0.00751120122560019!GO:0009303;rRNA transcription;0.00759769239789195!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00765410280067114!GO:0016408;C-acyltransferase activity;0.00771531592311429!GO:0008022;protein C-terminus binding;0.00778082396283375!GO:0031123;RNA 3'-end processing;0.00781874035977597!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00797729368712589!GO:0007346;regulation of progression through mitotic cell cycle;0.008014474975939!GO:0005832;chaperonin-containing T-complex;0.0080428215632715!GO:0030027;lamellipodium;0.0081361360553962!GO:0043022;ribosome binding;0.00824904214733489!GO:0000178;exosome (RNase complex);0.00843321712255639!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00846302118436441!GO:0000077;DNA damage checkpoint;0.0087350550709705!GO:0031970;organelle envelope lumen;0.0087350550709705!GO:0006351;transcription, DNA-dependent;0.00877117361817494!GO:0019206;nucleoside kinase activity;0.00902022218074407!GO:0008361;regulation of cell size;0.00946922541333317!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0100250645747282!GO:0015002;heme-copper terminal oxidase activity;0.0100250645747282!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0100250645747282!GO:0004129;cytochrome-c oxidase activity;0.0100250645747282!GO:0030176;integral to endoplasmic reticulum membrane;0.0101298345455679!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0101425489636251!GO:0015992;proton transport;0.0103763144566208!GO:0016049;cell growth;0.0105394464359368!GO:0000084;S phase of mitotic cell cycle;0.0106381645138797!GO:0051053;negative regulation of DNA metabolic process;0.0107835375075062!GO:0006818;hydrogen transport;0.0110128487959731!GO:0006378;mRNA polyadenylation;0.0110128487959731!GO:0008408;3'-5' exonuclease activity;0.011053482778262!GO:0048037;cofactor binding;0.0110820086745438!GO:0000096;sulfur amino acid metabolic process;0.0113493294289289!GO:0007021;tubulin folding;0.011578364830271!GO:0009451;RNA modification;0.0117642854183781!GO:0008092;cytoskeletal protein binding;0.0120162904118131!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0121985641475358!GO:0006541;glutamine metabolic process;0.0123254243292496!GO:0016197;endosome transport;0.012499323924783!GO:0044454;nuclear chromosome part;0.0125636625542804!GO:0022411;cellular component disassembly;0.0128215012002669!GO:0030496;midbody;0.0132490419168794!GO:0006497;protein amino acid lipidation;0.0135927641164959!GO:0007050;cell cycle arrest;0.0137972931638607!GO:0009124;nucleoside monophosphate biosynthetic process;0.0141135449686574!GO:0009123;nucleoside monophosphate metabolic process;0.0141135449686574!GO:0005100;Rho GTPase activator activity;0.0141309596899761!GO:0005869;dynactin complex;0.0141549044518907!GO:0048487;beta-tubulin binding;0.0141549044518907!GO:0006740;NADPH regeneration;0.0145580636039281!GO:0006098;pentose-phosphate shunt;0.0145580636039281!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0145747138910631!GO:0015399;primary active transmembrane transporter activity;0.0145747138910631!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0148773708684208!GO:0030145;manganese ion binding;0.0151582011570084!GO:0065007;biological regulation;0.0151582011570084!GO:0043189;H4/H2A histone acetyltransferase complex;0.0151906293160664!GO:0004532;exoribonuclease activity;0.0153392067648243!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0153392067648243!GO:0000209;protein polyubiquitination;0.0156571063001334!GO:0031625;ubiquitin protein ligase binding;0.0158732952624824!GO:0042393;histone binding;0.0159855764461988!GO:0005663;DNA replication factor C complex;0.0162695237384322!GO:0051320;S phase;0.0163417134454658!GO:0006650;glycerophospholipid metabolic process;0.0166057549772705!GO:0035267;NuA4 histone acetyltransferase complex;0.0167713857295667!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0173243299082869!GO:0000287;magnesium ion binding;0.0175839829625156!GO:0006778;porphyrin metabolic process;0.0177585786089139!GO:0033013;tetrapyrrole metabolic process;0.0177585786089139!GO:0065009;regulation of a molecular function;0.0177635486633438!GO:0006338;chromatin remodeling;0.0178436974719648!GO:0016407;acetyltransferase activity;0.0180761359463473!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0181162563803699!GO:0030119;AP-type membrane coat adaptor complex;0.0181162563803699!GO:0030041;actin filament polymerization;0.0184968908058124!GO:0005862;muscle thin filament tropomyosin;0.0185650953028884!GO:0046112;nucleobase biosynthetic process;0.0189988463332405!GO:0022890;inorganic cation transmembrane transporter activity;0.0194833657543639!GO:0000781;chromosome, telomeric region;0.0196603355653096!GO:0000152;nuclear ubiquitin ligase complex;0.0196603355653096!GO:0000726;non-recombinational repair;0.0196603355653096!GO:0016584;nucleosome positioning;0.0196882080758336!GO:0030659;cytoplasmic vesicle membrane;0.0196882080758336!GO:0006506;GPI anchor biosynthetic process;0.0197187517539864!GO:0008299;isoprenoid biosynthetic process;0.0199873049123889!GO:0006950;response to stress;0.0200445024439092!GO:0016044;membrane organization and biogenesis;0.0200561475392821!GO:0050681;androgen receptor binding;0.0200561475392821!GO:0006779;porphyrin biosynthetic process;0.0200739921515838!GO:0033014;tetrapyrrole biosynthetic process;0.0200739921515838!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0201969524321474!GO:0004523;ribonuclease H activity;0.0205645782014113!GO:0030125;clathrin vesicle coat;0.020672569884738!GO:0030665;clathrin coated vesicle membrane;0.020672569884738!GO:0016125;sterol metabolic process;0.0209172928557247!GO:0044262;cellular carbohydrate metabolic process;0.020945006170765!GO:0004177;aminopeptidase activity;0.021133961115729!GO:0006007;glucose catabolic process;0.0218719697420282!GO:0005669;transcription factor TFIID complex;0.022236441957906!GO:0006376;mRNA splice site selection;0.0224901446548913!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0224901446548913!GO:0008234;cysteine-type peptidase activity;0.0228757567338229!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0231997773957238!GO:0045449;regulation of transcription;0.0232055054358423!GO:0001558;regulation of cell growth;0.023295970750003!GO:0045892;negative regulation of transcription, DNA-dependent;0.0240233995624557!GO:0046128;purine ribonucleoside metabolic process;0.024248350104002!GO:0042278;purine nucleoside metabolic process;0.024248350104002!GO:0048522;positive regulation of cellular process;0.0245473813613489!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0249153038303736!GO:0006509;membrane protein ectodomain proteolysis;0.0250716947653908!GO:0033619;membrane protein proteolysis;0.0250716947653908!GO:0019783;small conjugating protein-specific protease activity;0.0252839401579615!GO:0009262;deoxyribonucleotide metabolic process;0.0252949313208182!GO:0030508;thiol-disulfide exchange intermediate activity;0.0253875347234066!GO:0031371;ubiquitin conjugating enzyme complex;0.0258326980422791!GO:0006505;GPI anchor metabolic process;0.0262819030839746!GO:0006607;NLS-bearing substrate import into nucleus;0.0264079691129635!GO:0030032;lamellipodium biogenesis;0.0265300454046075!GO:0003756;protein disulfide isomerase activity;0.0265587419869126!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0265587419869126!GO:0008243;plasminogen activator activity;0.0267661120375848!GO:0016581;NuRD complex;0.0267661120375848!GO:0000793;condensed chromosome;0.026924353608084!GO:0004448;isocitrate dehydrogenase activity;0.0270735057669593!GO:0008632;apoptotic program;0.0274800831961706!GO:0051537;2 iron, 2 sulfur cluster binding;0.0275854405800073!GO:0003887;DNA-directed DNA polymerase activity;0.0278891468427185!GO:0031529;ruffle organization and biogenesis;0.0287686190503069!GO:0009161;ribonucleoside monophosphate metabolic process;0.0287686190503069!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0287686190503069!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0294983690283324!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0297592554134691!GO:0031577;spindle checkpoint;0.0298146281078753!GO:0000118;histone deacetylase complex;0.0303867267061784!GO:0000123;histone acetyltransferase complex;0.0303867267061784!GO:0009225;nucleotide-sugar metabolic process;0.0304094789895578!GO:0008276;protein methyltransferase activity;0.0304940597450194!GO:0004843;ubiquitin-specific protease activity;0.0305472248871413!GO:0030384;phosphoinositide metabolic process;0.0305487907729835!GO:0032259;methylation;0.0307690919703541!GO:0008017;microtubule binding;0.0310301121104812!GO:0030131;clathrin adaptor complex;0.0311431623141543!GO:0030911;TPR domain binding;0.0322702250743124!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0323390947414862!GO:0007004;telomere maintenance via telomerase;0.0325949913348535!GO:0005875;microtubule associated complex;0.0329060946559808!GO:0008156;negative regulation of DNA replication;0.0334743477412251!GO:0048146;positive regulation of fibroblast proliferation;0.03377669513647!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0340430663522769!GO:0010257;NADH dehydrogenase complex assembly;0.0340430663522769!GO:0033108;mitochondrial respiratory chain complex assembly;0.0340430663522769!GO:0005881;cytoplasmic microtubule;0.0340815316279181!GO:0006400;tRNA modification;0.0341165388360354!GO:0043130;ubiquitin binding;0.0342700269798471!GO:0032182;small conjugating protein binding;0.0342700269798471!GO:0042158;lipoprotein biosynthetic process;0.0344803928896494!GO:0006266;DNA ligation;0.0346522007376483!GO:0005784;translocon complex;0.0351239146587307!GO:0030518;steroid hormone receptor signaling pathway;0.0354177192608287!GO:0006360;transcription from RNA polymerase I promoter;0.0356095730989918!GO:0012506;vesicle membrane;0.0364846901545286!GO:0007264;small GTPase mediated signal transduction;0.0365040102446592!GO:0045941;positive regulation of transcription;0.0370314272586264!GO:0033673;negative regulation of kinase activity;0.0370616829819234!GO:0006469;negative regulation of protein kinase activity;0.0370616829819234!GO:0005773;vacuole;0.0377508330085512!GO:0044450;microtubule organizing center part;0.0377698856108448!GO:0008287;protein serine/threonine phosphatase complex;0.0385432726034356!GO:0006596;polyamine biosynthetic process;0.0385432726034356!GO:0005680;anaphase-promoting complex;0.0392454975620651!GO:0043414;biopolymer methylation;0.0392770504894369!GO:0048144;fibroblast proliferation;0.0393895628299701!GO:0048145;regulation of fibroblast proliferation;0.0393895628299701!GO:0044433;cytoplasmic vesicle part;0.0396806653424125!GO:0008143;poly(A) binding;0.0397565387383671!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.039991903773293!GO:0045039;protein import into mitochondrial inner membrane;0.039991903773293!GO:0042026;protein refolding;0.0400675317408941!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0406078553369374!GO:0051348;negative regulation of transferase activity;0.0409016110561964!GO:0016301;kinase activity;0.0412701461462446!GO:0009067;aspartate family amino acid biosynthetic process;0.0414494798218807!GO:0008097;5S rRNA binding;0.041513583988994!GO:0006739;NADP metabolic process;0.0418093646089989!GO:0004221;ubiquitin thiolesterase activity;0.0422995112443317!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0423497536181664!GO:0045893;positive regulation of transcription, DNA-dependent;0.0430316715978842!GO:0050178;phenylpyruvate tautomerase activity;0.0430453762367523!GO:0016417;S-acyltransferase activity;0.0437312065752486!GO:0009119;ribonucleoside metabolic process;0.0445156777681066!GO:0005652;nuclear lamina;0.0445253801059277!GO:0006118;electron transport;0.0445253801059277!GO:0009066;aspartate family amino acid metabolic process;0.0445253801059277!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0445667344525301!GO:0007034;vacuolar transport;0.0448571690314183!GO:0042168;heme metabolic process;0.0448656559699216!GO:0030433;ER-associated protein catabolic process;0.0451733376952622!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0451733376952622!GO:0004722;protein serine/threonine phosphatase activity;0.0453645624728412!GO:0004239;methionyl aminopeptidase activity;0.0456372241445367!GO:0017134;fibroblast growth factor binding;0.0456848921400941!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0457993069211662!GO:0016790;thiolester hydrolase activity;0.0461575580676626!GO:0005732;small nucleolar ribonucleoprotein complex;0.046165142757915!GO:0006301;postreplication repair;0.0478298766627681!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.048108213223169!GO:0008629;induction of apoptosis by intracellular signals;0.0482256028492579!GO:0001832;blastocyst growth;0.0482256028492579!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0491369761777516!GO:0006892;post-Golgi vesicle-mediated transport;0.0491736785980967
|sample_id=11458
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skin
|top_motifs=TFDP1:1.85119842042;NKX3-1:1.68580618085;PAX8:1.49827492548;POU1F1:1.40405748577;E2F1..5:1.39729099531;GFI1:1.33078992701;NFY{A,B,C}:1.13793638375;TOPORS:1.10305413785;NKX2-2,8:1.09100315953;PDX1:1.01365362616;ALX4:0.973164212003;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.955474767123;EN1,2:0.914915320169;NR3C1:0.890573970933;MYB:0.88632299984;HOXA9_MEIS1:0.88234759705;ZNF143:0.847472444356;ZNF238:0.791805027672;NRF1:0.736511081121;GZF1:0.658287751904;NANOG{mouse}:0.654566602939;PAX4:0.611493379521;SOX17:0.606945677553;GFI1B:0.6047734169;YY1:0.598908850088;ELK1,4_GABP{A,B1}:0.595829977871;ZIC1..3:0.595047573482;POU2F1..3:0.563138243953;HES1:0.559660683767;POU3F1..4:0.515088041857;PRRX1,2:0.499654536241;PBX1:0.492083627222;PITX1..3:0.480091653842;HOX{A5,B5}:0.475774665316;UFEwm:0.446830862506;FOXP1:0.444978959914;NKX2-3_NKX2-5:0.426156985841;NFIX:0.409727047765;RXR{A,B,G}:0.399111403984;HBP1_HMGB_SSRP1_UBTF:0.387071817708;CDC5L:0.382682279228;PAX3,7:0.381571233059;BREu{core}:0.372517542072;TEAD1:0.360595204;NKX6-1,2:0.345392429889;FOXD3:0.343008125968;KLF4:0.339809680697;GCM1,2:0.339568798089;BACH2:0.339348458879;MZF1:0.329916140165;CRX:0.317033467501;T:0.311883983963;SPZ1:0.292338621315;LEF1_TCF7_TCF7L1,2:0.287058926326;AHR_ARNT_ARNT2:0.286509916213;AIRE:0.260188901806;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.256023403464;ONECUT1,2:0.253993198169;XCPE1{core}:0.251796896229;TEF:0.25177893935;TFAP2{A,C}:0.244408640165;FOS_FOS{B,L1}_JUN{B,D}:0.232925365775;PAX5:0.219897039374;EVI1:0.208430731177;XBP1:0.196666906085;MYBL2:0.17695718018;PRDM1:0.168329026034;AR:0.14908266644;NR1H4:0.147234146863;ATF6:0.146966252148;PAX1,9:0.140706438501;CREB1:0.125646029652;NKX2-1,4:0.119893148935;TBX4,5:0.116217254544;TAL1_TCF{3,4,12}:0.101603098793;ZBTB16:0.0776652710525;SRF:0.069386525003;HOX{A4,D4}:0.0546922521836;TFAP4:0.0523396543469;HSF1,2:0.0441713263257;STAT5{A,B}:0.0436822198071;GATA4:0.0420362387204;NFE2L2:0.0269526739497;TP53:0.0156254779891;LHX3,4:0.0125519087514;HIC1:0.0116829047386;FOSL2:-0.00874351867525;ELF1,2,4:-0.016993955662;SOX5:-0.0229688356421;SOX{8,9,10}:-0.0248189920543;FOXM1:-0.0305919151226;HNF1A:-0.0481404312435;NFATC1..3:-0.0531014957243;NANOG:-0.0539696065486;GTF2I:-0.0568614848234;TLX1..3_NFIC{dimer}:-0.0599450499672;ALX1:-0.0615436052848;NKX3-2:-0.0797810193367;TGIF1:-0.109887874106;TFAP2B:-0.112077769842;HLF:-0.112641224927;NR5A1,2:-0.121122595053;HNF4A_NR2F1,2:-0.129289715086;IKZF1:-0.138253119738;CEBPA,B_DDIT3:-0.145748714321;ESR1:-0.15458561831;HIF1A:-0.160095971034;VSX1,2:-0.175478297005;bHLH_family:-0.180096707926;HOX{A6,A7,B6,B7}:-0.206654136204;FOXL1:-0.206915287056;ZFP161:-0.212675610398;MTF1:-0.214151807997;FOX{I1,J2}:-0.219681628569;RFX1:-0.22188007399;ZNF384:-0.230049903231;NFE2:-0.230166330071;RUNX1..3:-0.236888499484;ZBTB6:-0.250007328164;STAT1,3:-0.257779140816;DMAP1_NCOR{1,2}_SMARC:-0.259533401282;GATA6:-0.270167098612;POU6F1:-0.285009684539;IKZF2:-0.288101877566;NFE2L1:-0.289545386138;GTF2A1,2:-0.291738321703;SOX2:-0.294018313368;ESRRA:-0.298114176995;OCT4_SOX2{dimer}:-0.303084208188;MEF2{A,B,C,D}:-0.311890585694;DBP:-0.313613972495;TBP:-0.314476976457;EGR1..3:-0.325311241232;MTE{core}:-0.327276761853;REST:-0.333822832371;NFKB1_REL_RELA:-0.337904146821;SP1:-0.338568307572;ATF4:-0.346252884996;PAX2:-0.348637967051;SPI1:-0.34938699292;PATZ1:-0.35063820187;CDX1,2,4:-0.353806703378;HAND1,2:-0.35593490577;ADNP_IRX_SIX_ZHX:-0.356955218944;ARID5B:-0.358024978114;ATF5_CREB3:-0.36873012717;RFX2..5_RFXANK_RFXAP:-0.369699900777;MED-1{core}:-0.374779463545;NHLH1,2:-0.376878653536;FOXQ1:-0.387998015737;POU5F1:-0.402537983297;FOXA2:-0.421959909552;HMGA1,2:-0.424589995017;STAT2,4,6:-0.444551610865;CUX2:-0.475788976462;NR6A1:-0.508135039962;SPIB:-0.516937989325;MAZ:-0.527578677232;BPTF:-0.554312612391;JUN:-0.56041203314;TFCP2:-0.570003628639;PPARG:-0.581227159168;RXRA_VDR{dimer}:-0.589138514084;ETS1,2:-0.601925180214;ZNF148:-0.612225472895;ZNF423:-0.625030017863;EP300:-0.636669690558;RBPJ:-0.649002977578;RREB1:-0.664590563314;MYFfamily:-0.664816463977;ATF2:-0.668352796524;FOXO1,3,4:-0.676460518409;GLI1..3:-0.677371292648;FOXN1:-0.707717376253;SMAD1..7,9:-0.708458006884;FOXP3:-0.711543051443;PAX6:-0.713717544094;EBF1:-0.751562178714;MAFB:-0.751983250077;NFIL3:-0.761042611558;SNAI1..3:-0.770849438154;FOX{F1,F2,J1}:-0.772503738979;IRF1,2:-0.817506239682;HMX1:-0.860408985643;IRF7:-0.872004733985;SREBF1,2:-0.984949202263;LMO2:-0.999940612369;MYOD1:-1.02069896287;ZEB1:-1.02391647086;TLX2:-1.02852399625;RORA:-1.04802800544;FOX{D1,D2}:-1.17415576506
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11458-119A9;search_select_hide=table117:FF:11458-119A9
}}
}}

Latest revision as of 18:02, 4 June 2020

Name:Fibroblast - Dermal, donor6
Species:Human (Homo sapiens)
Library ID:CNhs12059
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stagefetus
sexunknown
agefetal
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number4828
catalog numberSC2305
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005619
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12059 CAGE DRX008259 DRR009131
Accession ID Hg19

Library idBAMCTSS
CNhs12059 DRZ000556 DRZ001941
Accession ID Hg38

Library idBAMCTSS
CNhs12059 DRZ011906 DRZ013291
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.121
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.596
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0473
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.118
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.319
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.393
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.216
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.204
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.612
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00617
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.597
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0571
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0571
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0747
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.429
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.122
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.355
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12059

Jaspar motifP-value
MA0002.20.0539
MA0003.10.236
MA0004.10.728
MA0006.10.539
MA0007.10.724
MA0009.10.286
MA0014.10.724
MA0017.10.0681
MA0018.20.146
MA0019.10.559
MA0024.12.98111e-11
MA0025.10.0764
MA0027.10.537
MA0028.10.00517
MA0029.10.733
MA0030.10.00859
MA0031.10.0267
MA0035.20.012
MA0038.10.00294
MA0039.20.776
MA0040.10.141
MA0041.10.174
MA0042.10.333
MA0043.10.0159
MA0046.10.592
MA0047.20.411
MA0048.12.89754e-4
MA0050.14.7093e-7
MA0051.14.95436e-6
MA0052.10.976
MA0055.13.40222e-5
MA0057.10.73
MA0058.10.765
MA0059.10.301
MA0060.12.96454e-12
MA0061.10.00352
MA0062.20.152
MA0065.20.0498
MA0066.10.625
MA0067.10.168
MA0068.10.537
MA0069.10.425
MA0070.10.381
MA0071.10.785
MA0072.10.931
MA0073.10.508
MA0074.10.394
MA0076.10.00575
MA0077.10.6
MA0078.10.651
MA0079.20.15
MA0080.22.92671e-12
MA0081.10.209
MA0083.10.746
MA0084.10.0995
MA0087.10.407
MA0088.12.75715e-4
MA0090.10.6
MA0091.10.378
MA0092.10.478
MA0093.10.691
MA0099.20.528
MA0100.10.0779
MA0101.10.0922
MA0102.21.35654e-4
MA0103.13.53368e-5
MA0104.20.0356
MA0105.10.08
MA0106.10.359
MA0107.10.00384
MA0108.20.0579
MA0111.10.992
MA0112.20.00972
MA0113.10.919
MA0114.10.243
MA0115.10.933
MA0116.10.267
MA0117.10.925
MA0119.10.87
MA0122.10.526
MA0124.10.7
MA0125.10.411
MA0131.10.132
MA0135.10.999
MA0136.17.19189e-7
MA0137.20.0979
MA0138.20.818
MA0139.10.317
MA0140.10.201
MA0141.10.955
MA0142.10.417
MA0143.10.506
MA0144.10.0576
MA0145.10.0353
MA0146.10.515
MA0147.10.0628
MA0148.10.252
MA0149.10.848
MA0150.10.221
MA0152.10.0621
MA0153.10.312
MA0154.10.0164
MA0155.10.0623
MA0156.10.0161
MA0157.10.0361
MA0159.10.0352
MA0160.10.199
MA0162.10.387
MA0163.10.602
MA0164.10.471
MA0258.10.0273
MA0259.10.0686



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12059

Novel motifP-value
10.706
100.204
1000.601
1010.381
1020.346
1030.0767
1040.987
1050.708
1065.97005e-4
1070.171
1080.216
1090.908
110.784
1100.484
1110.521
1120.0534
1130.0279
1140.25
1150.776
1160.432
1170.674
1180.896
1190.126
120.483
1200.241
1210.994
1220.11
1230.784
1240.392
1250.569
1260.851
1270.619
1280.0171
1290.144
130.684
1300.0186
1310.766
1320.934
1330.74
1340.582
1350.0106
1360.5
1370.179
1380.251
1399.22491e-6
140.179
1400.839
1410.701
1420.536
1430.335
1440.683
1450.397
1460.717
1470.539
1480.338
1490.208
150.283
1500.982
1510.418
1520.0618
1530.261
1540.427
1550.0826
1560.684
1570.183
1580.0292
1590.0295
160.626
1600.523
1610.458
1620.815
1630.904
1640.76
1650.255
1660.87
1670.576
1680.445
1690.104
170.399
180.817
190.515
20.559
200.21
210.0442
220.241
230.0351
240.439
250.988
260.327
270.471
280.554
290.983
30.691
300.383
310.489
320.605
330.426
340.263
350.453
360.874
370.448
380.41
390.933
40.138
400.539
410.135
420.979
430.222
440.766
450.0648
460.498
470.833
480.573
490.3
50.162
500.614
510.661
520.0932
530.547
540.499
550.708
560.753
570.54
580.126
590.226
60.748
600.0177
610.963
620.177
630.862
640.932
650.158
660.057
670.788
680.994
690.743
70.495
700.00218
710.96
720.179
730.468
740.143
750.597
760.703
770.544
780.834
790.597
80.965
800.0292
810.357
820.0126
830.385
840.778
850.00614
860.426
870.176
880.379
890.1
90.531
900.62
910.545
920.176
930.826
940.863
950.249
960.369
970.752
980.448
990.0789



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12059


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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