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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005450
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005450
|accession_numbers=CAGE;DRX008111;DRR008983;DRZ000408;DRZ001793;DRZ011758;DRZ013143
|accession_numbers_RNASeq=sRNA-Seq;DRX037042;DRR041408;DRZ007050
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0002418,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004905,UBERON:0011135,UBERON:0000075,UBERON:0002216,UBERON:0004765,UBERON:0011134,UBERON:0002209,UBERON:0002213,UBERON:0000982,UBERON:0004755,UBERON:0006444,UBERON:0001995,UBERON:0007844,UBERON:0004715,UBERON:0002204,UBERON:0001434,UBERON:0004770,UBERON:0011138,UBERON:0001130,UBERON:0001066,UBERON:0001468
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0002418,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004905,UBERON:0011135,UBERON:0000075,UBERON:0002216,UBERON:0004765,UBERON:0011134,UBERON:0002209,UBERON:0002213,UBERON:0000982,UBERON:0004755,UBERON:0006444,UBERON:0001995,UBERON:0007844,UBERON:0004715,UBERON:0002204,UBERON:0001434,UBERON:0004770,UBERON:0011138,UBERON:0001130,UBERON:0001066,UBERON:0001468
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002602
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002602
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr14:61116183..61116208,-!p1@SIX1!1.87!266.77!SIX1;;chr14:37126765..37126799,+!p2@PAX9!1.68!47.39!PAX9;;chr14:75746722..75746777,+!p2@FOS!1.53!41.76!FOS;;chr12:54378923..54378966,+!p1@HOXC10!1.52!31.81!HOXC10;;chr7:19157248..19157268,-!p1@TWIST1!1.51!85.17!TWIST1;;chr6:1610293..1610310,+!p1@FOXC1!1.50!50.37!FOXC1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.50!30.82!HOXC5;;chr14:37131058..37131139,+!p1@PAX9!1.47!28.50!PAX9;;chr7:27192185..27192209,-!p1@HOXA3!1.43!25.85!HOXA3;;chr20:50179368..50179392,-!p2@NFATC2!1.41!31.48!NFATC2;;chr17:46682321..46682362,-!p1@HOXB6!1.39!23.53!HOXB6;;chr20:21686317..21686350,+!p1@PAX1!1.38!23.20!PAX1;;chr19:13134772..13134822,+!p2@NFIX!1.33!29.49!NFIX;;chr12:54379029..54379057,+!p2@HOXC10!1.33!20.22!HOXC10;;chr14:75745523..75745537,+!p1@FOS!1.31!2224.01!FOS;;chr20:21686290..21686311,+!p2@PAX1!1.30!18.89!PAX1;;chr7:27205136..27205164,-!p1@HOXA9!1.30!18.89!HOXA9;;chr7:27196217..27196246,-!p2@HOXA7!1.28!17.90!HOXA7;;chr5:158526917..158526932,-!p1@EBF1!1.26!42.42!EBF1;;chr6:85474299..85474324,-!p1@TBX18!1.26!30.49!TBX18;;chr7:19157043..19157088,-!p2@TWIST1!1.23!40.10!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.22!15.58!PRRX2;;chr2:45236540..45236577,-!p1@SIX2!1.19!14.58!SIX2;;chr12:115122318..115122331,-!p2@TBX3!1.15!13.26!TBX3;;chr6:134210243..134210257,+!p1@TCF21!1.15!13.26!TCF21;;chr14:61116168..61116180,-!p2@SIX1!1.14!14.58!SIX1;;chr9:132427972..132428056,+!p1@PRRX2!1.13!16.24!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.11!14.91!FOXF1;;chr11:46299539..46299620,+!p2@CREB3L1!1.08!18.89!CREB3L1;;chr11:113930425..113930471,+!p1@ZBTB16!1.08!15.91!ZBTB16;;chr9:96717629..96717644,-!p1@BARX1!1.08!10.94!BARX1;;chr2:85981107..85981120,+!p3@ATOH8!1.08!10.94!ATOH8;;chr9:77112244..77112262,+!p1@RORB!1.07!11.93!RORB;;chr19:45971246..45971265,+!p1@FOSB!1.06!197.18!FOSB;;chr6:1389789..1389821,+!p1@FOXF2!1.06!14.58!FOXF2;;chr12:54402745..54402788,+!p1@HOXC8!1.03!9.61!HOXC8;;chr12:52445218..52445237,+!p1@NR4A1!1.01!118.64!NR4A1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.01!9.94!GLIS1;;chr3:147111231..147111281,+!p3@ZIC1!1.01!9.28!ZIC1;;chr1:59249688..59249703,-!p3@JUN!1.00!55.34!JUN;;chr3:147127142..147127168,+!p1@ZIC1!1.00!8.95!ZIC1;;chr8:49833948..49833973,-!p2@SNAI2!0.99!57.33!SNAI2;;chr21:47063625..47063658,+!p1@PCBP3!0.99!39.10!PCBP3;;chr12:54393880..54393962,+!p1@HOXC9!0.98!8.62!HOXC9;;chr1:170633348..170633399,+!p2@PRRX1!0.97!11.60!PRRX1;;chr3:147127177..147127194,+!p2@ZIC1!0.97!8.28!ZIC1;;chr8:48650715..48650735,-!p1@CEBPD!0.96!1057.49!CEBPD;;chr11:46299199..46299233,+!p1@CREB3L1!0.96!43.08!CREB3L1;;chr14:61191018..61191048,-!p1@SIX4!0.96!17.90!SIX4;;chr5:137804484..137804498,+!p2@EGR1!0.95!33.14!EGR1;;chr12:66218598..66218645,+!p2@HMGA2!0.94!36.45!HMGA2;;chr9:16870659..16870675,-!p2@BNC2!0.94!9.61!BNC2;;chr17:46675558..46675577,-!p2@HOXB6!0.92!7.29!HOXB6;;chr11:113930401..113930422,+!p3@ZBTB16!0.92!7.29!ZBTB16;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.92!7.29!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!0.91!8.28!PRRX1;;chr4:13546632..13546662,-!p1@NKX3-2!0.90!6.96!NKX3-2;;chr4:174451370..174451387,-!p1@HAND2!0.90!6.96!HAND2;;chr21:36260773..36260804,-!p7@RUNX1!0.89!9.28!RUNX1;;chr12:115121962..115121987,-!p1@TBX3!0.88!58.33!TBX3;;chr5:158527139..158527161,-!p5@EBF1!0.88!6.63!EBF1;;chr1:44513995..44514031,+!p1@KLF17!0.88!6.63!KLF17;;chr12:66218836..66218888,+!p1@HMGA2!0.87!63.96!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!0.87!16.57!PPARG;;chr15:42749722..42749739,-!p2@ZFP106!0.87!11.93!ZFP106;;chr11:65687362..65687436,+!p3@DRAP1!0.86!29.83!DRAP1;;chr7:27183263..27183284,-!p2@HOXA5!0.86!6.30!HOXA5;;chr7:27205106..27205134,-!p2@HOXA9!0.86!6.30!HOXA9;;chr5:137801160..137801176,+!p1@EGR1!0.85!641.25!EGR1;;chr17:46675420..46675465,-!p3@HOXB6!0.84!6.96!HOXB6;;chr20:21687260..21687270,+!p3@PAX1!0.84!5.97!PAX1;;chr12:54380404..54380433,+!p3@HOXC10!0.84!5.97!HOXC10;;chr5:158526459..158526481,-!p2@EBF1!0.83!7.95!EBF1;;chr20:30193083..30193098,+!p1@ID1!0.82!488.48!ID1;;chr12:54402790..54402805,+!p2@HOXC8!0.82!5.63!HOXC8;;chr14:75746781..75746799,+!p6@FOS!0.82!5.63!FOS;;chr5:158527104..158527135,-!p4@EBF1!0.82!5.63!EBF1;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.63!HOXA10;;chr8:77593750..77593757,+!p3@ZFHX4!0.82!5.63!ZFHX4;;chr2:45236579..45236596,-!p2@SIX2!0.82!5.63!SIX2;;chr9:73028814..73028895,-!p1@KLF9!0.81!57.99!KLF9;;chr3:187463179..187463201,-!p2@BCL6!0.81!24.19!BCL6;;chr7:28448965..28448994,+!p2@CREB5!0.81!20.55!CREB5;;chr14:24837368..24837401,+!p1@NFATC4!0.81!13.59!NFATC4;;chr9:16870710..16870763,-!p1@BNC2!0.81!9.94!BNC2;;chr2:239756739..239756755,+!p2@TWIST2!0.81!9.61!TWIST2;;chr1:59249707..59249727,-!p1@JUN!0.80!242.25!JUN;;chr14:62162258..62162269,+!p2@HIF1A!0.80!55.01!HIF1A;;chr11:65687158..65687216,+!p4@DRAP1!0.80!33.14!DRAP1;;chr17:46688334..46688385,-!p1@HOXB7!0.80!7.95!HOXB7;;chr16:86600870..86600921,+!p2@FOXC2!0.80!5.30!FOXC2;;chr3:25470156..25470227,+!p2@RARB!0.80!5.30!RARB;;chr7:15726296..15726315,-!p1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793;;chr1:151032739..151032748,+!p6@MLLT11!0.21!0.99!MLLT11;;chr1:43148029..43148040,+!p7@YBX1!0.21!0.99!YBX1;;chr7:100076765..100076861,-!p1@TSC22D4!0.20!49.05!TSC22D4;;chr6:32157947..32157992,-!p1@PBX2!0.20!23.53!PBX2;;chr2:42795745..42795824,+!p1@MTA3!0.20!12.59!MTA3;;chr9:20622478..20622525,-!p1@MLLT3!0.20!10.60!MLLT3;;chr19:37825540..37825588,+!p2@HKR1!0.20!9.28!HKR1;;chr19:35264089..35264146,-!p1@ZNF599!0.20!6.63!ZNF599;;chr18:45457004..45457043,-!p3@SMAD2!0.20!5.63!SMAD2;;chr6:28220023..28220053,-!p1@ZKSCAN4!0.20!5.63!ZKSCAN4;;chr19:37960240..37960299,+!p1@ZNF570!0.20!4.31!ZNF570;;chr21:36421535..36421610,-!p2@RUNX1!0.20!4.31!RUNX1;;chr7:150945754..150945789,-!p2@SMARCD3!0.20!3.65!SMARCD3;;chr19:36705617..36705644,+!p4@ZNF146!0.20!3.31!ZNF146;;chr20:48807171..48807234,+!p4@CEBPB!0.20!2.32!CEBPB;;chr7:150946015..150946070,-!p3@SMARCD3!0.20!2.32!SMARCD3;;chrX:101975643..101975683,+!p1@BHLHB9!0.20!2.32!BHLHB9;;chr12:53774035..53774058,+!p4@SP1!0.20!1.99!SP1;;chr5:150284420..150284443,-!p2@ZNF300!0.20!1.99!ZNF300;;chr5:88179230..88179270,-!p4@MEF2C!0.20!1.99!MEF2C;;chr7:137686552..137686564,-!p9@CREB3L2!0.20!1.33!CREB3L2;;chr17:46655704..46655718,-!p2@HOXB4!0.20!1.33!HOXB4;;chr1:156470323..156470332,-!p4@MEF2D!0.20!1.33!MEF2D;;chr20:48807143..48807165,+!p11@CEBPB!0.20!1.33!CEBPB;;chr6:45390077..45390105,+!p9@RUNX2!0.20!0.99!RUNX2;;chr22:30162893..30162907,-!p2@ZMAT5!0.20!0.99!ZMAT5;;chr2:157198760..157198762,-!p5@NR4A2!0.20!0.99!NR4A2;;chr9:2029144..2029164,+!p10@SMARCA2!0.20!0.99!SMARCA2;;chr16:30798476..30798483,-!p2@ZNF629!0.20!0.99!ZNF629;;chr18:51751132..51751139,-!p9@MBD2!0.20!0.99!MBD2;;chr19:31840438..31840470,-!p3@TSHZ3!0.20!0.99!TSHZ3;;chr10:21822984..21823023,+!p5@MLLT10!0.20!0.99!MLLT10;;chr12:125003087..125003141,-!p4@NCOR2!0.20!0.99!NCOR2;;chr12:56753869..56753930,-!p1@STAT2!0.19!61.64!STAT2;;chr8:128748308..128748324,+!p2@MYC!0.19!38.44!MYC;;chr1:247495140..247495177,-!p1@ZNF496!0.19!14.58!ZNF496;;chr10:105110831..105110885,-!p1@PCGF6!0.19!12.92!PCGF6;;chr1:78148324..78148365,-!p2@ZZZ3!0.19!12.59!ZZZ3;;chr4:140098339..140098392,-!p1@ELF2!0.19!10.94!ELF2;;chr11:62368696..62368759,-!p4@MTA2!0.19!7.95!MTA2;;chr13:45151259..45151326,-!p2@TSC22D1!0.19!7.62!TSC22D1;;chr19:37701396..37701453,-!p1@ZNF585B!0.19!7.29!ZNF585B;;chr17:16472486..16472533,-!p1@ZNF287!0.19!6.30!ZNF287;;chr6:143266297..143266356,-!p1@HIVEP2!0.19!5.97!HIVEP2;;chr2:242576641..242576731,-!p2@THAP4!0.19!4.64!THAP4;;chr19:58920000..58920057,+!p1@ZNF584!0.19!4.64!ZNF584;;chr19:57751980..57752019,+!p2@ZNF805!0.19!3.98!ZNF805;;chr7:99156145..99156207,+!p5@ZNF655!0.19!3.98!ZNF655;;chr16:29817433..29817468,+!p8@MAZ!0.19!3.65!MAZ;;chr17:4890695..4890773,-!p2@CAMTA2!0.19!3.65!CAMTA2;;chr19:18392250..18392260,-!p4@JUND!0.19!3.65!JUND;;chr1:61547894..61547968,+!p2@NFIA!0.19!3.31!NFIA;;chr1:8484142..8484232,-!p10@RERE!0.19!2.98!RERE;;chr19:56904880..56904919,-!p1@ZNF582!0.19!2.65!ZNF582;;chr1:158979851..158979865,+!p5@IFI16!0.19!2.32!IFI16;;chr19:56652686..56652701,+!p3@ZNF444!0.19!1.66!ZNF444;;chr1:8923998..8924033,-!p8@ENO1!0.19!1.66!ENO1;;chr1:91487806..91487826,-!p5@ZNF644!0.19!1.66!ZNF644;;chr16:29817399..29817425,+!p13@MAZ!0.19!1.66!MAZ;;chr2:46524878..46524891,+!p3@EPAS1!0.19!1.66!EPAS1;;chr12:124457725..124457736,+!p2@ZNF664!0.19!1.66!ZNF664;;chr14:62203749..62203798,+!p5@HIF1A!0.19!1.33!HIF1A;;chr9:102584241..102584261,+!p4@NR4A3!0.19!1.33!NR4A3;;
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002602;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000982;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007844;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011135
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12064.11463-119B5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12064.11463-119B5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12064.11463-119B5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12064.11463-119B5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Anulus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12064.11463-119B5.hg38.nobarcode.ctss.bed.gz
|id=FF:11463-119B5
|id=FF:11463-119B5
|is_a=EFO:0002091;;FF:0000192
|is_a=EFO:0002091;;FF:0000192
|is_obsolete=
|is_obsolete=
|library_id=CNhs12064
|library_id_phase_based=2:CNhs12064
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11463
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.CTTGTA.11463
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11463
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.CTTGTA.11463
|name=Anulus Pulposus Cell, donor2
|name=Anulus Pulposus Cell, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 64:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12064,LSID838,release011,COMPLETED
|profile_hcage=CNhs12064,LSID838,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10004,,,
|profile_srnaseq=SRhi10004,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 84: Line 105:
|top_motifs=RXR{A,B,G}:2.18053769927;GZF1:2.1550840132;ATF6:1.76853199565;FOXL1:1.56384277454;EBF1:1.47364979636;ESR1:1.44170126649;GLI1..3:1.44148964122;TFAP4:1.30878589123;ZNF423:1.2963527551;ZBTB6:1.21180387609;HES1:1.18953306288;ZNF238:1.10821506388;GFI1B:1.03380774876;PATZ1:0.947943139377;UFEwm:0.91553147944;DBP:0.878480308433;SPZ1:0.875375415544;PAX1,9:0.875085522278;NFATC1..3:0.873427696184;HOX{A5,B5}:0.864412808678;NR3C1:0.857206440759;TFCP2:0.830915060999;NANOG{mouse}:0.814646864156;GTF2A1,2:0.807333082389;TEAD1:0.80604552757;RXRA_VDR{dimer}:0.785631456092;TAL1_TCF{3,4,12}:0.774093428188;AIRE:0.76588460805;ALX4:0.764187912355;NR6A1:0.739550403625;TLX1..3_NFIC{dimer}:0.725180689119;HMX1:0.668250572996;PAX5:0.657456030489;KLF4:0.652923217188;ZIC1..3:0.6492469625;TBX4,5:0.642421803425;MAZ:0.636692128129;MYBL2:0.630682813649;MZF1:0.614705331872;POU6F1:0.592526373253;GTF2I:0.589802662487;IKZF1:0.575564644786;NFIX:0.56198543577;XBP1:0.489651685204;AR:0.478213213231;ESRRA:0.472822148307;EN1,2:0.468438846965;NR1H4:0.45583855768;TP53:0.448746154439;TFAP2{A,C}:0.438432979737;SRF:0.433314632262;SP1:0.429996535308;MAFB:0.411134809218;RREB1:0.405585595744;NR5A1,2:0.399434241822;NHLH1,2:0.392963030095;ARID5B:0.360028470058;NKX6-1,2:0.358914329276;FOXO1,3,4:0.352660089193;ONECUT1,2:0.349055455701;STAT2,4,6:0.337815524528;MYFfamily:0.337611188847;TFAP2B:0.335934164616;MTF1:0.322545907572;LEF1_TCF7_TCF7L1,2:0.320026058369;YY1:0.31698349392;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.313297473013;TBP:0.284358099448;MED-1{core}:0.283469319014;EGR1..3:0.279275020981;HIF1A:0.273577778037;SOX17:0.26009337477;DMAP1_NCOR{1,2}_SMARC:0.259500384221;HIC1:0.257187002763;FOX{I1,J2}:0.24811587999;AHR_ARNT_ARNT2:0.246512644862;HAND1,2:0.233273323358;NKX2-3_NKX2-5:0.212135480884;NFE2L2:0.188619747476;NKX2-2,8:0.181769896182;PDX1:0.180675527014;HNF1A:0.171133856818;HOX{A6,A7,B6,B7}:0.153770968516;NFE2:0.121606634834;MTE{core}:0.115915032199;XCPE1{core}:0.113554804323;NKX3-1:0.112606709747;LHX3,4:0.108887841514;PAX4:0.106341496829;SMAD1..7,9:0.103250162572;STAT1,3:0.0974105404239;BACH2:0.0879789529101;MEF2{A,B,C,D}:0.0701856470851;REST:0.070063483833;PRDM1:0.0517768509866;HNF4A_NR2F1,2:0.0341358256851;RBPJ:0.0306439127585;STAT5{A,B}:0.00848259115547;ZNF148:0.00295638251023;SOX5:-0.00442526255019;RFX1:-0.0208187018489;HOX{A4,D4}:-0.0211238702066;FOS_FOS{B,L1}_JUN{B,D}:-0.0228717355099;FOX{F1,F2,J1}:-0.0475602005154;RFX2..5_RFXANK_RFXAP:-0.0557271183677;PAX8:-0.0616692423344;NFIL3:-0.0630199720776;NKX2-1,4:-0.0664630157134;PRRX1,2:-0.068544695943;RUNX1..3:-0.0789267529261;TEF:-0.0830838936198;SREBF1,2:-0.0847701185886;bHLH_family:-0.10825172261;ZFP161:-0.108850262268;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.109602525437;TGIF1:-0.132776467598;FOSL2:-0.149088400658;CRX:-0.16090036822;POU2F1..3:-0.164225698029;FOXQ1:-0.173699935551;HLF:-0.183412523919;PPARG:-0.184333763601;ATF2:-0.191186757752;FOXN1:-0.194762651388;PAX6:-0.198790238616;BPTF:-0.213048342873;HMGA1,2:-0.219564841504;GFI1:-0.231138968248;ZNF384:-0.239309464457;ADNP_IRX_SIX_ZHX:-0.252230997468;EVI1:-0.271770632619;ELK1,4_GABP{A,B1}:-0.276425914159;FOX{D1,D2}:-0.289222627593;FOXD3:-0.306921209932;LMO2:-0.331167565136;SNAI1..3:-0.331292422122;CREB1:-0.342395819414;NFE2L1:-0.352567516159;BREu{core}:-0.353839304686;ZNF143:-0.358511972355;GATA4:-0.373023630321;PBX1:-0.388160437662;ATF4:-0.393184072888;HOXA9_MEIS1:-0.401535558041;NFKB1_REL_RELA:-0.416768440938;IKZF2:-0.417942983111;T:-0.423626520519;JUN:-0.430915375753;FOXP3:-0.431232385021;PAX2:-0.449848768989;CEBPA,B_DDIT3:-0.45109764716;ATF5_CREB3:-0.454555454441;CDX1,2,4:-0.479847979424;NRF1:-0.486215644665;FOXA2:-0.489633490981;SOX2:-0.491289406368;FOXM1:-0.502134469479;RORA:-0.505218822804;MYB:-0.509953211624;TOPORS:-0.511028861322;HSF1,2:-0.513408499486;ETS1,2:-0.522319531411;ALX1:-0.534546970394;GCM1,2:-0.567469252717;PAX3,7:-0.572131054595;ZEB1:-0.585242960002;SPI1:-0.593510849699;EP300:-0.609927078484;ZBTB16:-0.63686288987;NKX3-2:-0.647649333113;GATA6:-0.673133277218;TFDP1:-0.682610265308;POU1F1:-0.689569039421;IRF1,2:-0.698800260694;VSX1,2:-0.70557015536;SPIB:-0.732903191227;IRF7:-0.772643415048;MYOD1:-0.788087831973;POU3F1..4:-0.832038544679;CDC5L:-0.857094459491;CUX2:-0.897122465899;ELF1,2,4:-0.897477438904;FOXP1:-0.902400090181;SOX{8,9,10}:-0.912094275771;NFY{A,B,C}:-0.91364850966;NANOG:-0.944484403127;E2F1..5:-1.00209130402;TLX2:-1.03773278115;POU5F1:-1.09126221836;OCT4_SOX2{dimer}:-1.20025461038;HBP1_HMGB_SSRP1_UBTF:-1.21396268328;PITX1..3:-1.51997139451
|top_motifs=RXR{A,B,G}:2.18053769927;GZF1:2.1550840132;ATF6:1.76853199565;FOXL1:1.56384277454;EBF1:1.47364979636;ESR1:1.44170126649;GLI1..3:1.44148964122;TFAP4:1.30878589123;ZNF423:1.2963527551;ZBTB6:1.21180387609;HES1:1.18953306288;ZNF238:1.10821506388;GFI1B:1.03380774876;PATZ1:0.947943139377;UFEwm:0.91553147944;DBP:0.878480308433;SPZ1:0.875375415544;PAX1,9:0.875085522278;NFATC1..3:0.873427696184;HOX{A5,B5}:0.864412808678;NR3C1:0.857206440759;TFCP2:0.830915060999;NANOG{mouse}:0.814646864156;GTF2A1,2:0.807333082389;TEAD1:0.80604552757;RXRA_VDR{dimer}:0.785631456092;TAL1_TCF{3,4,12}:0.774093428188;AIRE:0.76588460805;ALX4:0.764187912355;NR6A1:0.739550403625;TLX1..3_NFIC{dimer}:0.725180689119;HMX1:0.668250572996;PAX5:0.657456030489;KLF4:0.652923217188;ZIC1..3:0.6492469625;TBX4,5:0.642421803425;MAZ:0.636692128129;MYBL2:0.630682813649;MZF1:0.614705331872;POU6F1:0.592526373253;GTF2I:0.589802662487;IKZF1:0.575564644786;NFIX:0.56198543577;XBP1:0.489651685204;AR:0.478213213231;ESRRA:0.472822148307;EN1,2:0.468438846965;NR1H4:0.45583855768;TP53:0.448746154439;TFAP2{A,C}:0.438432979737;SRF:0.433314632262;SP1:0.429996535308;MAFB:0.411134809218;RREB1:0.405585595744;NR5A1,2:0.399434241822;NHLH1,2:0.392963030095;ARID5B:0.360028470058;NKX6-1,2:0.358914329276;FOXO1,3,4:0.352660089193;ONECUT1,2:0.349055455701;STAT2,4,6:0.337815524528;MYFfamily:0.337611188847;TFAP2B:0.335934164616;MTF1:0.322545907572;LEF1_TCF7_TCF7L1,2:0.320026058369;YY1:0.31698349392;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.313297473013;TBP:0.284358099448;MED-1{core}:0.283469319014;EGR1..3:0.279275020981;HIF1A:0.273577778037;SOX17:0.26009337477;DMAP1_NCOR{1,2}_SMARC:0.259500384221;HIC1:0.257187002763;FOX{I1,J2}:0.24811587999;AHR_ARNT_ARNT2:0.246512644862;HAND1,2:0.233273323358;NKX2-3_NKX2-5:0.212135480884;NFE2L2:0.188619747476;NKX2-2,8:0.181769896182;PDX1:0.180675527014;HNF1A:0.171133856818;HOX{A6,A7,B6,B7}:0.153770968516;NFE2:0.121606634834;MTE{core}:0.115915032199;XCPE1{core}:0.113554804323;NKX3-1:0.112606709747;LHX3,4:0.108887841514;PAX4:0.106341496829;SMAD1..7,9:0.103250162572;STAT1,3:0.0974105404239;BACH2:0.0879789529101;MEF2{A,B,C,D}:0.0701856470851;REST:0.070063483833;PRDM1:0.0517768509866;HNF4A_NR2F1,2:0.0341358256851;RBPJ:0.0306439127585;STAT5{A,B}:0.00848259115547;ZNF148:0.00295638251023;SOX5:-0.00442526255019;RFX1:-0.0208187018489;HOX{A4,D4}:-0.0211238702066;FOS_FOS{B,L1}_JUN{B,D}:-0.0228717355099;FOX{F1,F2,J1}:-0.0475602005154;RFX2..5_RFXANK_RFXAP:-0.0557271183677;PAX8:-0.0616692423344;NFIL3:-0.0630199720776;NKX2-1,4:-0.0664630157134;PRRX1,2:-0.068544695943;RUNX1..3:-0.0789267529261;TEF:-0.0830838936198;SREBF1,2:-0.0847701185886;bHLH_family:-0.10825172261;ZFP161:-0.108850262268;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.109602525437;TGIF1:-0.132776467598;FOSL2:-0.149088400658;CRX:-0.16090036822;POU2F1..3:-0.164225698029;FOXQ1:-0.173699935551;HLF:-0.183412523919;PPARG:-0.184333763601;ATF2:-0.191186757752;FOXN1:-0.194762651388;PAX6:-0.198790238616;BPTF:-0.213048342873;HMGA1,2:-0.219564841504;GFI1:-0.231138968248;ZNF384:-0.239309464457;ADNP_IRX_SIX_ZHX:-0.252230997468;EVI1:-0.271770632619;ELK1,4_GABP{A,B1}:-0.276425914159;FOX{D1,D2}:-0.289222627593;FOXD3:-0.306921209932;LMO2:-0.331167565136;SNAI1..3:-0.331292422122;CREB1:-0.342395819414;NFE2L1:-0.352567516159;BREu{core}:-0.353839304686;ZNF143:-0.358511972355;GATA4:-0.373023630321;PBX1:-0.388160437662;ATF4:-0.393184072888;HOXA9_MEIS1:-0.401535558041;NFKB1_REL_RELA:-0.416768440938;IKZF2:-0.417942983111;T:-0.423626520519;JUN:-0.430915375753;FOXP3:-0.431232385021;PAX2:-0.449848768989;CEBPA,B_DDIT3:-0.45109764716;ATF5_CREB3:-0.454555454441;CDX1,2,4:-0.479847979424;NRF1:-0.486215644665;FOXA2:-0.489633490981;SOX2:-0.491289406368;FOXM1:-0.502134469479;RORA:-0.505218822804;MYB:-0.509953211624;TOPORS:-0.511028861322;HSF1,2:-0.513408499486;ETS1,2:-0.522319531411;ALX1:-0.534546970394;GCM1,2:-0.567469252717;PAX3,7:-0.572131054595;ZEB1:-0.585242960002;SPI1:-0.593510849699;EP300:-0.609927078484;ZBTB16:-0.63686288987;NKX3-2:-0.647649333113;GATA6:-0.673133277218;TFDP1:-0.682610265308;POU1F1:-0.689569039421;IRF1,2:-0.698800260694;VSX1,2:-0.70557015536;SPIB:-0.732903191227;IRF7:-0.772643415048;MYOD1:-0.788087831973;POU3F1..4:-0.832038544679;CDC5L:-0.857094459491;CUX2:-0.897122465899;ELF1,2,4:-0.897477438904;FOXP1:-0.902400090181;SOX{8,9,10}:-0.912094275771;NFY{A,B,C}:-0.91364850966;NANOG:-0.944484403127;E2F1..5:-1.00209130402;TLX2:-1.03773278115;POU5F1:-1.09126221836;OCT4_SOX2{dimer}:-1.20025461038;HBP1_HMGB_SSRP1_UBTF:-1.21396268328;PITX1..3:-1.51997139451
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11463-119B5;search_select_hide=table117:FF:11463-119B5
}}
}}

Latest revision as of 18:03, 4 June 2020

Name:Anulus Pulposus Cell, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12064
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuespinal cord
dev stageNA
sexunknown
ageNA
cell typeanulus fibrosus cell of intervertebral disc
cell lineNA
companySciencell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:5027
catalog numberSC4815
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005450
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12064 CAGE DRX008111 DRR008983
Accession ID Hg19

Library idBAMCTSS
CNhs12064 DRZ000408 DRZ001793
Accession ID Hg38

Library idBAMCTSS
CNhs12064 DRZ011758 DRZ013143
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005450
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.CTTGTA sRNA-Seq DRX037042 DRR041408
Accession ID Hg19

Library idBAMCTSS
SRhi10004.CTTGTA DRZ007050


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.073
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.367
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.221
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.221
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.151
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.291
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.124
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.778
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.122
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0366
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.221
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.271
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0054
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.312
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.124
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.124
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.402
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.124
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.3
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.424
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.221
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.424
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.635
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12064

Jaspar motifP-value
MA0002.20.0694
MA0003.10.266
MA0004.10.43
MA0006.10.236
MA0007.10.29
MA0009.10.59
MA0014.10.601
MA0017.10.945
MA0018.20.00175
MA0019.10.459
MA0024.16.396e-6
MA0025.10.0295
MA0027.10.611
MA0028.10.00479
MA0029.10.849
MA0030.10.871
MA0031.10.759
MA0035.20.127
MA0038.10.209
MA0039.20.287
MA0040.10.275
MA0041.10.231
MA0042.10.25
MA0043.10.00773
MA0046.10.477
MA0047.20.34
MA0048.10.77
MA0050.18.49586e-7
MA0051.10.00365
MA0052.10.946
MA0055.10.44
MA0057.10.775
MA0058.10.311
MA0059.10.152
MA0060.12.47137e-5
MA0061.10.218
MA0062.24.07897e-8
MA0065.20.944
MA0066.10.413
MA0067.10.0402
MA0068.10.167
MA0069.10.746
MA0070.10.848
MA0071.10.923
MA0072.10.526
MA0073.10.926
MA0074.10.304
MA0076.10.00103
MA0077.10.227
MA0078.10.653
MA0079.20.141
MA0080.21.93823e-9
MA0081.10.0043
MA0083.14.02576e-4
MA0084.10.511
MA0087.10.436
MA0088.10.662
MA0090.10.0105
MA0091.10.0121
MA0092.10.712
MA0093.10.321
MA0099.20.726
MA0100.10.301
MA0101.10.00688
MA0102.20.933
MA0103.10.114
MA0104.20.0948
MA0105.10.673
MA0106.10.433
MA0107.10.00588
MA0108.20.0671
MA0111.10.601
MA0112.20.0482
MA0113.10.0625
MA0114.10.802
MA0115.10.271
MA0116.10.876
MA0117.10.178
MA0119.10.505
MA0122.10.909
MA0124.10.491
MA0125.10.464
MA0131.10.44
MA0135.10.585
MA0136.19.22295e-13
MA0137.20.317
MA0138.20.189
MA0139.10.866
MA0140.10.0669
MA0141.10.301
MA0142.10.51
MA0143.10.814
MA0144.10.117
MA0145.10.317
MA0146.10.213
MA0147.10.0636
MA0148.10.13
MA0149.10.0601
MA0150.10.157
MA0152.10.04
MA0153.10.231
MA0154.10.521
MA0155.10.0912
MA0156.11.15336e-10
MA0157.10.775
MA0159.10.502
MA0160.10.363
MA0162.10.167
MA0163.10.239
MA0164.10.882
MA0258.10.901
MA0259.10.204



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12064

Novel motifP-value
10.457
100.515
1000.424
1010.3
1020.299
1030.333
1040.695
1050.826
1060.378
1070.0355
1080.436
1090.996
110.681
1100.53
1110.279
1120.729
1130.94
1140.978
1150.399
1160.107
1170.736
1180.991
1190.898
120.533
1200.255
1210.243
1220.185
1233.18657e-5
1240.323
1250.0181
1260.697
1270.322
1280.0482
1290.769
130.108
1300.526
1310.208
1320.131
1330.811
1340.476
1350.764
1360.291
1370.107
1380.428
1390.864
140.986
1400.665
1410.0947
1420.457
1430.769
1440.434
1450.82
1460.808
1470.221
1480.914
1490.0671
150.391
1500.846
1510.734
1520.0853
1530.773
1540.206
1550.0846
1560.268
1570.681
1580.0599
1590.478
160.0641
1600.54
1610.638
1620.352
1630.964
1640.481
1650.894
1660.251
1670.107
1680.795
1690.141
170.391
180.515
190.0366
20.0862
200.382
210.579
220.0687
230.201
240.488
250.447
260.786
270.103
280.133
290.451
30.793
300.0704
310.28
323.16343e-10
330.805
340.468
350.739
360.0251
370.162
380.674
390.475
40.132
400.0762
410.102
420.526
430.992
440.401
450.138
460.477
470.335
480.701
490.506
50.846
500.521
510.636
520.402
530.0541
540.569
550.438
560.863
570.469
580.326
590.029
60.303
600.592
610.298
620.715
630.868
640.812
650.312
660.241
670.72
680.126
690.264
70.512
701
710.477
720.961
730.0841
740.305
750.814
760.55
770.0758
780.231
790.0243
80.516
800.68
810.722
820.341
830.929
840.286
850.24
860.725
870.624
880.469
890.212
90.134
900.00619
910.999
920.263
930.588
940.858
950.843
960.878
970.507
980.647
993.54481e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12064


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002602 (annulus pulposus cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0002418 (cartilage tissue)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004905 (articulation)
0011135 (intervertebral cartilage)
0000075 (subdivision of skeletal system)
0002216 (symphysis)
0004765 (skeletal element)
0011134 (nonsynovial joint)
0002209 (fibrous joint)
0002213 (cartilaginous joint)
0000982 (skeletal joint)
0004755 (skeletal tissue)
0006444 (annulus fibrosus)
0001995 (fibrocartilage)
0007844 (cartilage element)
0004715 (annulus fibrosus disci intervertebralis)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
0011138 (post-cranial axial skeletal system)
0001130 (vertebral column)
0001066 (intervertebral disk)
0001468 (intervertebral joint)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000192 (human anulus pulposus cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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