FF:11526-119I5: Difference between revisions

Latest revision as of 18:06, 4 June 2020

Name:	Corneal Epithelial Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11336
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	eye
dev stage	NA
sex	NA
age	NA
cell type	corneal epithelial cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC6515
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004967

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11336		CAGE		DRX008209		DRR009081

Accession ID Hg19

Library id		BAM		CTSS
CNhs11336		DRZ000506		DRZ001891

Accession ID Hg38

Library id		BAM		CTSS
CNhs11336		DRZ011856		DRZ013241

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004967

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10015.TTAGGC		sRNA-Seq		DRX037248		DRR041614

Accession ID Hg19

Library id		BAM		CTSS
SRhi10015.TTAGGC		DRZ007256

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0941
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.165
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.131
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0761
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.481
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0786
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.811
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.126
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.447
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.307
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.238
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.355
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0909
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11336

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.404
MA0003.1	MA0003.1	0.373
MA0004.1	MA0004.1	0.887
MA0006.1	MA0006.1	0.252
MA0007.1	MA0007.1	0.34
MA0009.1	MA0009.1	0.244
MA0014.1	MA0014.1	0.697
MA0017.1	MA0017.1	0.0965
MA0018.2	MA0018.2	0.0241
MA0019.1	MA0019.1	0.654
MA0024.1	MA0024.1	0.0753
MA0025.1	MA0025.1	0.899
MA0027.1	MA0027.1	0.575
MA0028.1	MA0028.1	0.0713
MA0029.1	MA0029.1	0.338
MA0030.1	MA0030.1	0.703
MA0031.1	MA0031.1	0.0814
MA0035.2	MA0035.2	0.0622
MA0038.1	MA0038.1	0.871
MA0039.2	MA0039.2	0.013
MA0040.1	MA0040.1	0.448
MA0041.1	MA0041.1	0.239
MA0042.1	MA0042.1	0.804
MA0043.1	MA0043.1	0.0635
MA0046.1	MA0046.1	0.0611
MA0047.2	MA0047.2	0.703
MA0048.1	MA0048.1	0.817
MA0050.1	MA0050.1	4.54933e-5
MA0051.1	MA0051.1	0.00133
MA0052.1	MA0052.1	0.791
MA0055.1	MA0055.1	0.187
MA0057.1	MA0057.1	0.0108
MA0058.1	MA0058.1	0.534
MA0059.1	MA0059.1	0.653
MA0060.1	MA0060.1	0.38
MA0061.1	MA0061.1	0.424
MA0062.2	MA0062.2	0.00286
MA0065.2	MA0065.2	0.0197
MA0066.1	MA0066.1	0.283
MA0067.1	MA0067.1	0.11
MA0068.1	MA0068.1	0.0109
MA0069.1	MA0069.1	0.957
MA0070.1	MA0070.1	0.155
MA0071.1	MA0071.1	0.636
MA0072.1	MA0072.1	0.999
MA0073.1	MA0073.1	0.789
MA0074.1	MA0074.1	0.702
MA0076.1	MA0076.1	0.00899
MA0077.1	MA0077.1	0.4
MA0078.1	MA0078.1	0.643
MA0079.2	MA0079.2	0.398
MA0080.2	MA0080.2	3.41451e-4
MA0081.1	MA0081.1	0.0605
MA0083.1	MA0083.1	0.914
MA0084.1	MA0084.1	0.0183
MA0087.1	MA0087.1	0.477
MA0088.1	MA0088.1	0.781
MA0090.1	MA0090.1	0.0114
MA0091.1	MA0091.1	0.871
MA0092.1	MA0092.1	0.407
MA0093.1	MA0093.1	0.766
MA0099.2	MA0099.2	2.37585e-9
MA0100.1	MA0100.1	0.0998
MA0101.1	MA0101.1	0.991
MA0102.2	MA0102.2	0.0917
MA0103.1	MA0103.1	1.70392e-5
MA0104.2	MA0104.2	0.916
MA0105.1	MA0105.1	0.464
MA0106.1	MA0106.1	3.27612e-5
MA0107.1	MA0107.1	0.701
MA0108.2	MA0108.2	0.0061
MA0111.1	MA0111.1	0.75
MA0112.2	MA0112.2	0.0347
MA0113.1	MA0113.1	0.671
MA0114.1	MA0114.1	0.0649
MA0115.1	MA0115.1	0.787
MA0116.1	MA0116.1	0.181
MA0117.1	MA0117.1	0.403
MA0119.1	MA0119.1	0.171
MA0122.1	MA0122.1	0.802
MA0124.1	MA0124.1	0.971
MA0125.1	MA0125.1	0.124
MA0131.1	MA0131.1	0.209
MA0135.1	MA0135.1	0.0152
MA0136.1	MA0136.1	0.00267
MA0137.2	MA0137.2	0.0363
MA0138.2	MA0138.2	0.0794
MA0139.1	MA0139.1	0.52
MA0140.1	MA0140.1	0.941
MA0141.1	MA0141.1	0.25
MA0142.1	MA0142.1	0.207
MA0143.1	MA0143.1	0.645
MA0144.1	MA0144.1	0.742
MA0145.1	MA0145.1	0.0561
MA0146.1	MA0146.1	0.0528
MA0147.1	MA0147.1	0.861
MA0148.1	MA0148.1	0.328
MA0149.1	MA0149.1	0.0327
MA0150.1	MA0150.1	0.507
MA0152.1	MA0152.1	0.0618
MA0153.1	MA0153.1	0.123
MA0154.1	MA0154.1	0.118
MA0155.1	MA0155.1	0.247
MA0156.1	MA0156.1	0.00471
MA0157.1	MA0157.1	0.125
MA0159.1	MA0159.1	0.297
MA0160.1	MA0160.1	0.261
MA0162.1	MA0162.1	0.171
MA0163.1	MA0163.1	0.315
MA0164.1	MA0164.1	0.465
MA0258.1	MA0258.1	0.207
MA0259.1	MA0259.1	0.638

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11336

Novel motif	Logo	P-value
1	1	0.537
10	10	0.456
100	100	0.827
101	101	0.174
102	102	0.313
103	103	0.313
104	104	0.465
105	105	0.00903
106	106	0.0494
107	107	0.0286
108	108	0.372
109	109	0.0206
11	11	0.141
110	110	0.166
111	111	0.599
112	112	0.353
113	113	0.536
114	114	0.438
115	115	0.503
116	116	0.396
117	117	0.762
118	118	0.663
119	119	0.124
12	12	0.212
120	120	0.438
121	121	0.266
122	122	0.0479
123	123	0.593
124	124	0.852
125	125	0.566
126	126	0.599
127	127	0.107
128	128	0.187
129	129	0.0104
13	13	0.113
130	130	0.547
131	131	0.466
132	132	0.154
133	133	0.0133
134	134	0.873
135	135	0.77
136	136	0.806
137	137	0.444
138	138	0.839
139	139	0.8
14	14	0.522
140	140	0.855
141	141	0.745
142	142	0.175
143	143	0.812
144	144	0.753
145	145	0.164
146	146	0.029
147	147	0.169
148	148	0.29
149	149	0.331
15	15	0.793
150	150	0.328
151	151	0.37
152	152	0.0957
153	153	0.993
154	154	0.659
155	155	0.668
156	156	0.111
157	157	0.215
158	158	0.582
159	159	0.98
16	16	0.127
160	160	0.0318
161	161	0.251
162	162	0.345
163	163	0.645
164	164	0.894
165	165	0.474
166	166	0.413
167	167	0.0996
168	168	0.661
169	169	0.0782
17	17	0.127
18	18	0.104
19	19	0.425
2	2	0.105
20	20	0.633
21	21	0.843
22	22	0.154
23	23	0.215
24	24	0.177
25	25	0.947
26	26	0.184
27	27	0.277
28	28	0.922
29	29	0.719
3	3	0.484
30	30	0.111
31	31	0.572
32	32	0.551
33	33	0.288
34	34	0.319
35	35	0.426
36	36	0.801
37	37	0.432
38	38	0.209
39	39	0.155
4	4	0.117
40	40	0.0161
41	41	0.944
42	42	0.539
43	43	0.343
44	44	0.343
45	45	0.0976
46	46	0.354
47	47	0.342
48	48	0.17
49	49	0.428
5	5	0.961
50	50	0.416
51	51	0.441
52	52	0.336
53	53	0.994
54	54	0.512
55	55	0.743
56	56	0.281
57	57	0.354
58	58	0.812
59	59	0.0551
6	6	0.322
60	60	0.166
61	61	0.67
62	62	0.985
63	63	0.149
64	64	0.194
65	65	0.0606
66	66	0.606
67	67	0.478
68	68	0.655
69	69	0.16
7	7	0.46
70	70	0.0263
71	71	0.281
72	72	0.572
73	73	0.0871
74	74	0.109
75	75	0.447
76	76	0.46
77	77	0.0266
78	78	0.189
79	79	0.8
8	8	0.165
80	80	0.602
81	81	1
82	82	0.805
83	83	0.993
84	84	0.582
85	85	0.321
86	86	0.781
87	87	0.207
88	88	0.315
89	89	0.034
9	9	0.474
90	90	0.29
91	91	0.246
92	92	0.483
93	93	0.717
94	94	0.404
95	95	0.266
96	96	0.935
97	97	0.856
98	98	0.263
99	99	0.0211

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11336

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000043 human corneal epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000575 (corneal epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000964 (cornea)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0010409 (eye surface)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000043 (human corneal epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000064,UBERON:0000047,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001444,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0003102,UBERON:0000020,UBERON:0001032,UBERON:0005085,UBERON:0001048,UBERON:0006598,UBERON:0005157,UBERON:0002532,UBERON:0000964,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0003075,UBERON:0003056,UBERON:0002342,UBERON:0003072,UBERON:0003071,UBERON:0006601,UBERON:0004348,UBERON:0005427,UBERON:0004128,UBERON:0005062,UBERON:0007284
+|DRA_sample_Accession=CAGE@SAMD00004967
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000221,CL:0000220,CL:0000004,CL:0002159,CL:0000255,CL:0002077,CL:0000575
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004967
+|accession_numbers=CAGE;DRX008209;DRR009081;DRZ000506;DRZ001891;DRZ011856;DRZ013241
+|accession_numbers_RNASeq=sRNA-Seq;DRX037248;DRR041614;DRZ007256
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0000964,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0010409,UBERON:0004456,UBERON:0001456,UBERON:0010230
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002159,CL:0000255,CL:0002077,CL:0000575
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000043
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.67!469.58!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.42!295.08!IRF6;;chr1:209979411..209979433,-!p2@IRF6!2.08!119.85!IRF6;;chr1:6479968..6479986,-!p1@HES2!2.06!115.12!HES2;;chr6:10415276..10415341,-!p2@TFAP2A!2.00!120.95!TFAP2A;;chr4:57547454..57547469,-!p1@HOPX!1.94!85.97!HOPX;;chr3:189507432..189507459,+!p1@TP63!1.83!66.30!TP63;;chr17:80797886..80797906,-!p1@ZNF750!1.82!64.84!ZNF750;;chr12:54785074..54785122,-!p2@ZNF385A!1.78!89.25!ZNF385A;;chr17:7492684..7492778,-!p2@SOX15!1.76!114.75!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.74!88.52!TFAP2A;;chr1:24645832..24645853,+!p1@GRHL3!1.69!48.09!GRHL3;;chr8:10588010..10588030,-!p1@SOX7!1.68!46.99!SOX7;;chr12:54785054..54785072,-!p4@ZNF385A!1.65!48.82!ZNF385A;;chr2:63277948..63277974,+!p1@OTX1!1.61!39.34!OTX1;;chr11:34642612..34642646,+!p1@EHF!1.59!37.89!EHF;;chr19:45908292..45908374,-!p1@PPP1R13L!1.47!242.98!PPP1R13L;;chr6:10415484..10415508,-!p3@TFAP2A!1.47!28.78!TFAP2A;;chr12:66218255..66218304,+!p3@HMGA2!1.42!67.03!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!1.42!28.78!BNC1;;chr3:111314186..111314204,-!p1@ZBED2!1.40!24.04!ZBED2;;chr17:48072574..48072597,-!p1@DLX3!1.39!23.68!DLX3;;chr1:2461692..2461710,-!p1@HES5!1.33!20.40!HES5;;chr2:46524897..46524911,+!p2@EPAS1!1.32!54.64!EPAS1;;chr1:24645921..24645973,+!p2@GRHL3!1.32!19.67!GRHL3;;chr17:46132044..46132080,+!p4@NFE2L1!1.28!18.21!NFE2L1;;chr11:31839488..31839515,-!p3@PAX6!1.28!17.85!PAX6;;chr11:65554528..65554546,+!p1@OVOL1!1.27!17.49!OVOL1;;chr6:10419768..10419819,-!p6@TFAP2A!1.27!17.49!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!1.25!175.59!KLF5;;chr11:129245526..129245553,+!p1@BARX2!1.24!16.39!BARX2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.24!16.39!TFCP2L1;;chr17:41623692..41623715,-!p1@ETV4!1.18!59.38!ETV4;;chr15:101069113..101069169,-!p1@CERS3!1.18!14.21!CERS3;;chr11:65686802..65686818,+!p6@DRAP1!1.17!23.68!DRAP1;;chr5:134369905..134369972,-!p1@PITX1!1.16!20.40!PITX1;;chr5:2751762..2751784,-!p1@IRX2!1.16!13.48!IRX2;;chr6:10412576..10412599,-!p5@TFAP2A!1.14!12.75!TFAP2A;;chr15:67458861..67458879,+!p17@SMAD3!1.14!12.75!SMAD3;;chr6:1312325..1312340,+!p1@FOXQ1!1.13!20.40!FOXQ1;;chr8:128748308..128748324,+!p2@MYC!1.10!320.94!MYC;;chr1:209979449..209979460,-!p3@IRF6!1.10!11.66!IRF6;;chr20:55204351..55204377,+!p1@TFAP2C!1.09!14.57!TFAP2C;;chr1:201979743..201979762,+!p1@ELF3!1.08!10.93!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.06!10.56!GRHL2;;chr5:134369879..134369898,-!p2@PITX1!1.05!10.20!PITX1;;chr12:53614115..53614154,-!p1@RARG!1.03!52.46!RARG;;chr17:41623009..41623053,-!p4@ETV4!1.02!15.66!ETV4;;chr17:8027418..8027432,-!p1@HES7!1.02!9.47!HES7;;chr20:22565185..22565223,-!p3@FOXA2!1.00!9.11!FOXA2;;chr1:40367530..40367597,-!p1@MYCL1!0.99!16.03!MYCL1;;chr6:10413188..10413249,-!p7@TFAP2A!0.99!8.74!TFAP2A;;chr11:31832658..31832681,-!p1@PAX6!0.99!8.74!PAX6;;chr17:38465413..38465438,+!p5@RARA!0.97!13.48!RARA;;chr17:26833339..26833378,+!p1@FOXN1!0.97!8.38!FOXN1;;chr1:201979703..201979721,+!p2@ELF3!0.97!8.38!ELF3;;chr12:66218212..66218244,+!p5@HMGA2!0.94!11.29!HMGA2;;chr2:113994526..113994556,-!p3@PAX8!0.94!7.65!PAX8;;chr6:10419824..10419840,-!p9@TFAP2A!0.94!7.65!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!0.92!34.97!HMGA2;;chr19:42636586..42636607,-!p1@POU2F2!0.92!20.76!POU2F2;;chr11:65554563..65554576,+!p2@OVOL1!0.92!7.29!OVOL1;;chr6:10415263..10415274,-!p8@TFAP2A!0.92!7.29!TFAP2A;;chr17:80797863..80797874,-!p2@ZNF750!0.90!6.92!ZNF750;;chr11:65686732..65686756,+!p2@DRAP1!0.88!29.14!DRAP1;;chr3:111314230..111314241,-!p2@ZBED2!0.88!6.56!ZBED2;;chr4:57522598..57522664,-!p3@HOPX!0.88!6.56!HOPX;;chr6:34204672..34204692,+!p1@HMGA1!0.86!745.71!HMGA1;;chr14:21566731..21566836,-!p1@ZNF219!0.86!71.77!ZNF219;;chr2:46524878..46524891,+!p3@EPAS1!0.86!11.29!EPAS1;;chr2:63277978..63277995,+!p2@OTX1!0.86!6.19!OTX1;;chr1:154975258..154975330,+!p1@ZBTB7B!0.85!24.04!ZBTB7B;;chr12:53625966..53626012,-!p2@RARG!0.85!16.76!RARG;;chr11:47236584..47236679,+!p1@DDB2!0.84!68.49!DDB2;;chr11:65667846..65667868,-!p1@FOSL1!0.83!163.57!FOSL1;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.38!IRX3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.82!75.04!ZC3H12A;;chr8:49833948..49833973,-!p2@SNAI2!0.82!37.89!SNAI2;;chr12:66218183..66218209,+!p4@HMGA2!0.81!10.93!HMGA2;;chr11:34642656..34642667,+!p2@EHF!0.81!5.46!EHF;;chr4:188916918..188916942,+!p1@ZFP42!0.81!5.46!ZFP42;;chr4:299227..299272,-!p1@ZNF732!0.81!5.46!ZNF732;;chr4:57522674..57522699,-!p5@HOPX!0.81!5.46!HOPX;;chr1:154975229..154975247,+!p6@ZBTB7B!0.79!5.10!ZBTB7B;;chr1:24646263..24646277,+!p4@GRHL3!0.79!5.10!GRHL3;;chr8:48650715..48650735,-!p1@CEBPD!0.77!682.69!CEBPD;;chr12:48298785..48298828,-!p1@VDR!0.77!28.42!VDR;;chrX:107018969..107019024,-!p6@TSC22D3!0.77!6.92!TSC22D3;;chr6:34524093..34524135,-!p1@SPDEF!0.76!4.74!SPDEF;;chr15:67458836..67458859,+!p22@SMAD3!0.76!4.74!SMAD3;;chr1:209979375..209979386,-!p4@IRF6!0.76!4.74!IRF6;;chr20:55205825..55205847,+!p2@TFAP2C!0.76!4.74!TFAP2C;;chr17:3571863..3571881,-!p1@TAX1BP3!0.75!362.84!TAX1B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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000575;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000964;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002342;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157
+|ffid_belonging_in_development=CL:0000221
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Corneal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11336.11526-119I5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Corneal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11336.11526-119I5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Corneal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11336.11526-119I5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Corneal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11336.11526-119I5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Corneal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11336.11526-119I5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11526-119I5
 |is_a=EFO:0002091;;FF:0000043
 |is_obsolete=
+|library_id=CNhs11336
+|library_id_phase_based=2:CNhs11336
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11526
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.TTAGGC.11526
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11526
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.TTAGGC.11526
 |name=Corneal Epithelial Cells, donor1
 |namespace=FANTOM5
@@ Line 44: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11336,LSID768,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10015,,,
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 |rna_box=119
 |rna_catalog_number=SC6515
@@ Line 58: / Line 82: @@
 |rna_tube_id=119I5
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10015.TTAGGC
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=lot:4976
 |sample_cell_line=
@@ Line 80: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11526-119I5;search_select_hide=table117:FF:11526-119I5
 }}

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FF:11526-119I5: Difference between revisions

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Latest revision as of 18:06, 4 June 2020

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