FF:11560-120D3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062 | |DRA_sample_Accession=CAGE@SAMD00005411 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008286;DRR009158;DRZ000583;DRZ001968;DRZ011933;DRZ013318 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet=DOID:4,DOID:17,DOID:450,DOID:7,DOID:66,DOID:423,DOID:0080000,DOID:11722 | |ancestors_in_disease_facet=DOID:4,DOID:17,DOID:450,DOID:7,DOID:66,DOID:423,DOID:0080000,DOID:11722 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000253 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.50!312.35!LHX9;;chr15:57511609..57511651,+!p2@TCF12!1.81!105.01!TCF12;;chr7:19157248..19157268,-!p1@TWIST1!1.56!95.74!TWIST1;;chr4:174451370..174451387,-!p1@HAND2!1.54!33.90!HAND2;;chr2:239756739..239756755,+!p2@TWIST2!1.47!47.82!TWIST2;;chr9:132427972..132428056,+!p1@PRRX2!1.47!36.69!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.45!26.90!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.45!26.90!EMX2;;chr2:239756671..239756732,+!p1@TWIST2!1.44!82.34!TWIST2;;chr1:170632285..170632309,+!p1@PRRX1!1.44!29.68!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.39!23.29!HOXC5;;chr4:174450089..174450153,-!p2@HAND2!1.37!22.47!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.36!110.47!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.31!26.07!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!1.27!26.07!NFIX;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.74!IRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!63.27!FOXD1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.17!13.91!RUNX1T1;;chr15:83953397..83953425,-!p1@BNC1!1.11!13.60!BNC1;;chr21:36260773..36260804,-!p7@RUNX1!1.09!15.15!RUNX1;;chr16:86544113..86544145,+!p1@FOXF1!1.09!13.91!FOXF1;;chr1:197886665..197886732,+!p3@LHX9!1.05!10.31!LHX9;;chr10:28034739..28034756,-!p1@MKX!1.04!10.00!MKX;;chr1:170633262..170633285,+!p3@PRRX1!1.03!11.03!PRRX1;;chr20:51588873..51588953,+!p1@TSHZ2!1.02!12.47!TSHZ2;;chr20:55204351..55204377,+!p1@TFAP2C!1.02!12.06!TFAP2C;;chr5:72744445..72744466,-!p2@FOXD1!1.00!15.15!FOXD1;;chrY:21906594..21906622,-!p1@KDM5D!0.99!8.86!KDM5D;;chr2:176994408..176994492,+!p1@HOXD8!0.99!8.86!HOXD8;;chr1:197886421..197886432,+!p2@LHX9!0.98!8.66!LHX9;;chrY:2803415..2803468,+!p1@ZFY!0.98!8.55!ZFY;;chr5:2751785..2751808,-!p2@IRX2!0.98!8.45!IRX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.98!8.45!RUNX1T1;;chr3:157823517..157823562,-!p1@SHOX2!0.95!8.55!SHOX2;;chr10:119302232..119302265,+!p1@EMX2!0.95!7.94!EMX2;;chr7:44143925..44143970,+!p1@AEBP1!0.94!176.84!AEBP1;;chr7:27224842..27224872,-!p1@HOXA11!0.94!7.73!HOXA11;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.24!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!0.93!7.42!TCF21;;chr10:63809106..63809127,+!p1@ARID5B!0.92!103.67!ARID5B;;chr11:46299539..46299620,+!p2@CREB3L1!0.92!12.78!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!0.91!7.21!HOXA9;;chr15:37392616..37392638,-!p2@MEIS2!0.90!22.47!MEIS2;;chr14:24837368..24837401,+!p1@NFATC4!0.90!17.11!NFATC4;;chr2:102091566..102091581,-!p1@RFX8!0.90!6.90!RFX8;;chr2:176969228..176969260,+!p1@HOXD11!0.90!6.90!HOXD11;;chr12:53614115..53614154,-!p1@RARG!0.89!38.03!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.19!ZNF521;;chr15:37390850..37390909,-!p3@MEIS2!0.89!13.60!MEIS2;;chr10:31610110..31610159,+!p2@ZEB1!0.89!6.80!ZEB1;;chr17:46682321..46682362,-!p1@HOXB6!0.89!6.70!HOXB6;;chr5:321810..321877,+!p1@AHRR!0.88!21.64!AHRR;;chr7:27205106..27205134,-!p2@HOXA9!0.88!6.60!HOXA9;;chr2:19558373..19558392,-!p1@OSR1!0.87!18.24!OSR1;;chr15:57511589..57511608,+!p4@TCF12!0.87!6.49!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!0.87!6.49!HOXC8;;chr7:27192185..27192209,-!p1@HOXA3!0.86!6.29!HOXA3;;chr11:65687362..65687436,+!p3@DRAP1!0.85!29.58!DRAP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.08!HOXC5;;chr3:147111231..147111281,+!p3@ZIC1!0.85!6.08!ZIC1;;chr7:27224795..27224840,-!p2@HOXA11!0.85!6.08!HOXA11;;chr19:13135386..13135435,+!p4@NFIX!0.84!5.98!NFIX;;chr11:65686732..65686756,+!p2@DRAP1!0.83!26.07!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.83!9.07!ZBTB38;;chr3:147111198..147111225,+!p4@ZIC1!0.83!5.77!ZIC1;;chr7:42276787..42276815,-!p1@GLI3!0.82!15.87!GLI3;;chr1:170632250..170632277,+!p7@PRRX1!0.82!5.67!PRRX1;;chr8:67525443..67525459,-!p2@MYBL1!0.81!8.45!MYBL1;;chr16:31076332..31076388,-!p3@ZNF668!0.80!5.36!ZNF668;;chr3:128206762..128206781,-!p2@GATA2!0.79!34.83!GATA2;;chr10:63809013..63809041,+!p3@ARID5B!0.79!31.02!ARID5B;;chr18:53068911..53068935,-!p4@TCF4!0.79!5.98!TCF4;;chr3:21792585..21792625,-!p2@ZNF385D!0.79!5.87!ZNF385D;;chr2:96012397..96012417,+!p3@KCNIP3!0.79!5.15!KCNIP3;;chr3:138665937..138665968,-!p1@FOXL2!0.79!5.15!FOXL2;;chr15:37392724..37392757,-!p1@MEIS2!0.78!24.84!MEIS2;;chr1:158979872..158979898,+!p3@IFI16!0.78!16.80!IFI16;;chr7:44143978..44143989,+!p2@AEBP1!0.78!9.79!AEBP1;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.55!ETV1;;chr11:65686802..65686818,+!p6@DRAP1!0.77!8.97!DRAP1;;chr22:19748231..19748317,+!p1@TBX1!0.77!4.95!TBX1;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.84!IRX1;;chr1:158979792..158979814,+!p2@IFI16!0.76!49.77!IFI16;;chr1:170633058..170633084,+!p5@PRRX1!0.75!4.64!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.75!4.64!NFIX;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.43!SNAI2;;chr15:42749722..42749739,-!p2@ZFP106!0.74!8.45!ZFP106;;chr6:100912785..100912822,-!p1@SIM1!0.74!4.53!SIM1;;chr10:31608127..31608156,+!p1@ZEB1!0.73!90.17!ZEB1;;chr4:4861385..4861398,+!p1@MSX1!0.73!14.12!MSX1;;chr11:65687222..65687240,+!p7@DRAP1!0.73!5.77!DRAP1;;chr7:44143997..44144008,+!p3@AEBP1!0.73!5.77!AEBP1;;chr5:142780189..14278022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| |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.50!312.35!LHX9;;chr15:57511609..57511651,+!p2@TCF12!1.81!105.01!TCF12;;chr7:19157248..19157268,-!p1@TWIST1!1.56!95.74!TWIST1;;chr4:174451370..174451387,-!p1@HAND2!1.54!33.90!HAND2;;chr2:239756739..239756755,+!p2@TWIST2!1.47!47.82!TWIST2;;chr9:132427972..132428056,+!p1@PRRX2!1.47!36.69!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.45!26.90!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.45!26.90!EMX2;;chr2:239756671..239756732,+!p1@TWIST2!1.44!82.34!TWIST2;;chr1:170632285..170632309,+!p1@PRRX1!1.44!29.68!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.39!23.29!HOXC5;;chr4:174450089..174450153,-!p2@HAND2!1.37!22.47!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.36!110.47!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.31!26.07!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!1.27!26.07!NFIX;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.74!IRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!63.27!FOXD1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.17!13.91!RUNX1T1;;chr15:83953397..83953425,-!p1@BNC1!1.11!13.60!BNC1;;chr21:36260773..36260804,-!p7@RUNX1!1.09!15.15!RUNX1;;chr16:86544113..86544145,+!p1@FOXF1!1.09!13.91!FOXF1;;chr1:197886665..197886732,+!p3@LHX9!1.05!10.31!LHX9;;chr10:28034739..28034756,-!p1@MKX!1.04!10.00!MKX;;chr1:170633262..170633285,+!p3@PRRX1!1.03!11.03!PRRX1;;chr20:51588873..51588953,+!p1@TSHZ2!1.02!12.47!TSHZ2;;chr20:55204351..55204377,+!p1@TFAP2C!1.02!12.06!TFAP2C;;chr5:72744445..72744466,-!p2@FOXD1!1.00!15.15!FOXD1;;chrY:21906594..21906622,-!p1@KDM5D!0.99!8.86!KDM5D;;chr2:176994408..176994492,+!p1@HOXD8!0.99!8.86!HOXD8;;chr1:197886421..197886432,+!p2@LHX9!0.98!8.66!LHX9;;chrY:2803415..2803468,+!p1@ZFY!0.98!8.55!ZFY;;chr5:2751785..2751808,-!p2@IRX2!0.98!8.45!IRX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.98!8.45!RUNX1T1;;chr3:157823517..157823562,-!p1@SHOX2!0.95!8.55!SHOX2;;chr10:119302232..119302265,+!p1@EMX2!0.95!7.94!EMX2;;chr7:44143925..44143970,+!p1@AEBP1!0.94!176.84!AEBP1;;chr7:27224842..27224872,-!p1@HOXA11!0.94!7.73!HOXA11;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.24!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!0.93!7.42!TCF21;;chr10:63809106..63809127,+!p1@ARID5B!0.92!103.67!ARID5B;;chr11:46299539..46299620,+!p2@CREB3L1!0.92!12.78!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!0.91!7.21!HOXA9;;chr15:37392616..37392638,-!p2@MEIS2!0.90!22.47!MEIS2;;chr14:24837368..24837401,+!p1@NFATC4!0.90!17.11!NFATC4;;chr2:102091566..102091581,-!p1@RFX8!0.90!6.90!RFX8;;chr2:176969228..176969260,+!p1@HOXD11!0.90!6.90!HOXD11;;chr12:53614115..53614154,-!p1@RARG!0.89!38.03!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.19!ZNF521;;chr15:37390850..37390909,-!p3@MEIS2!0.89!13.60!MEIS2;;chr10:31610110..31610159,+!p2@ZEB1!0.89!6.80!ZEB1;;chr17:46682321..46682362,-!p1@HOXB6!0.89!6.70!HOXB6;;chr5:321810..321877,+!p1@AHRR!0.88!21.64!AHRR;;chr7:27205106..27205134,-!p2@HOXA9!0.88!6.60!HOXA9;;chr2:19558373..19558392,-!p1@OSR1!0.87!18.24!OSR1;;chr15:57511589..57511608,+!p4@TCF12!0.87!6.49!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!0.87!6.49!HOXC8;;chr7:27192185..27192209,-!p1@HOXA3!0.86!6.29!HOXA3;;chr11:65687362..65687436,+!p3@DRAP1!0.85!29.58!DRAP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.08!HOXC5;;chr3:147111231..147111281,+!p3@ZIC1!0.85!6.08!ZIC1;;chr7:27224795..27224840,-!p2@HOXA11!0.85!6.08!HOXA11;;chr19:13135386..13135435,+!p4@NFIX!0.84!5.98!NFIX;;chr11:65686732..65686756,+!p2@DRAP1!0.83!26.07!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.83!9.07!ZBTB38;;chr3:147111198..147111225,+!p4@ZIC1!0.83!5.77!ZIC1;;chr7:42276787..42276815,-!p1@GLI3!0.82!15.87!GLI3;;chr1:170632250..170632277,+!p7@PRRX1!0.82!5.67!PRRX1;;chr8:67525443..67525459,-!p2@MYBL1!0.81!8.45!MYBL1;;chr16:31076332..31076388,-!p3@ZNF668!0.80!5.36!ZNF668;;chr3:128206762..128206781,-!p2@GATA2!0.79!34.83!GATA2;;chr10:63809013..63809041,+!p3@ARID5B!0.79!31.02!ARID5B;;chr18:53068911..53068935,-!p4@TCF4!0.79!5.98!TCF4;;chr3:21792585..21792625,-!p2@ZNF385D!0.79!5.87!ZNF385D;;chr2:96012397..96012417,+!p3@KCNIP3!0.79!5.15!KCNIP3;;chr3:138665937..138665968,-!p1@FOXL2!0.79!5.15!FOXL2;;chr15:37392724..37392757,-!p1@MEIS2!0.78!24.84!MEIS2;;chr1:158979872..158979898,+!p3@IFI16!0.78!16.80!IFI16;;chr7:44143978..44143989,+!p2@AEBP1!0.78!9.79!AEBP1;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.55!ETV1;;chr11:65686802..65686818,+!p6@DRAP1!0.77!8.97!DRAP1;;chr22:19748231..19748317,+!p1@TBX1!0.77!4.95!TBX1;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.84!IRX1;;chr1:158979792..158979814,+!p2@IFI16!0.76!49.77!IFI16;;chr1:170633058..170633084,+!p5@PRRX1!0.75!4.64!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.75!4.64!NFIX;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.43!SNAI2;;chr15:42749722..42749739,-!p2@ZFP106!0.74!8.45!ZFP106;;chr6:100912785..100912822,-!p1@SIM1!0.74!4.53!SIM1;;chr10:31608127..31608156,+!p1@ZEB1!0.73!90.17!ZEB1;;chr4:4861385..4861398,+!p1@MSX1!0.73!14.12!MSX1;;chr11:65687222..65687240,+!p7@DRAP1!0.73!5.77!DRAP1;;chr7:44143997..44144008,+!p3@AEBP1!0.73!5.77!AEBP1;;chr5:142780189..142780223,-!p6@NR3C1!0.73!4.43!NR3C1;;chr7:27196267..27196311,-!p1@HOXA7!0.73!4.43!HOXA7;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.65!HIF1A;;chr2:176969097..176969109,+!p3@HOXD11!0.72!4.23!HOXD11;;chr5:3595934..3595957,+!p2@IRX1!0.72!4.23!IRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.72!4.23!HOXA10;;chr7:19157043..19157088,-!p2@TWIST1!0.71!11.44!TWIST1;;chr19:13136130..13136165,+!p6@NFIX!0.70!5.56!NFIX;;chr12:54394309..54394336,+!p2@HOXC9!0.70!4.02!HOXC9;;chr4:174451350..174451363,-!p3@HAND2!0.70!4.02!HAND2;;chr8:49833978..49833996,-!p1@SNAI2!0.69!92.44!SNAI2;;chr12:66218598..66218645,+!p2@HMGA2!0.69!20.40!HMGA2;;chr1:164528445..164528459,+!p2@PBX1!0.69!13.50!PBX1;;chr8:60031619..60031676,-!p1@TOX!0.69!9.17!TOX;;chr1:119530493..119530572,-!p1@TBX15!0.69!3.92!TBX15;;chr10:31607811..31607837,+!p6@ZEB1!0.69!3.92!ZEB1;;chr12:115121962..115121987,-!p1@TBX3!0.68!36.07!TBX3;;chr10:114710244..114710257,+!p3@TCF7L2!0.68!11.34!TCF7L2;;chr1:221052776..221052799,+!p1@HLX!0.67!7.11!HLX;;chr16:54964740..54964789,+!p1@IRX5!0.67!5.67!IRX5;;chr19:47523058..47523114,+!p1@NPAS1!0.67!3.71!NPAS1;;chr1:170632723..170632739,+!p8@PRRX1!0.67!3.71!PRRX1;;chr3:21792682..21792720,-!p1@ZNF385D!0.67!3.71!ZNF385D;;chr10:119302508..119302559,+!p5@EMX2!0.67!3.71!EMX2;;chr5:158526917..158526932,-!p1@EBF1!0.66!9.79!EBF1;;chr7:137686763..137686784,-!p5@CREB3L2!0.66!6.70!CREB3L2;;chr6:10412600..10412637,-!p1@TFAP2A!0.66!6.39!TFAP2A;;chr5:72744562..72744573,-!p3@FOXD1!0.66!4.64!FOXD1;;chr11:46299186..46299195,+!p3@CREB3L1!0.66!4.02!CREB3L1;;chr10:28032421..28032494,-!p2@MKX!0.66!3.61!MKX;;chr15:96869255..96869291,+!p6@NR2F2!0.65!6.90!NR2F2;;chr11:12696071..12696086,+!p3@TEAD1!0.65!4.84!TEAD1;;chr9:16870659..16870675,-!p2@BNC2!0.65!4.43!BNC2;;chr6:10415276..10415341,-!p2@TFAP2A!0.65!4.43!TFAP2A;;chr8:106330656..106330684,+!p1@ZFPM2!0.64!9.89!ZFPM2;;chr10:31607702..31607755,+!p3@ZEB1!0.64!4.02!ZEB1;;chr10:119302645..119302712,+!p3@EMX2!0.64!3.40!EMX2;;chr8:23564065..23564087,-!p1@NKX2-6!0.64!3.40!NKX2-6;;chr3:37217736..37217753,-!p2@LRRFIP2!0.63!15.97!LRRFIP2;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.30!RFX8;;chr2:172949484..172949522,+!p1@DLX1!0.63!3.30!DLX1;;chr14:75894714..75894733,+!p1@JDP2!0.62!107.90!JDP2;;chr14:61116183..61116208,-!p1@SIX1!0.62!13.91!SIX1;;chr15:96874927..96874938,+!p8@NR2F2!0.62!7.63!NR2F2;;chr15:37392703..37392717,-!p8@MEIS2!0.62!4.74!MEIS2;;chr4:81118647..81118666,+!p1@PRDM8!0.62!4.43!PRDM8;;chr17:46675420..46675465,-!p3@HOXB6!0.62!3.81!HOXB6;;chr2:172950227..172950249,+!p2@DLX1!0.62!3.19!DLX1;;chr3:138665969..138665993,-!p2@FOXL2!0.62!3.19!FOXL2;;chr3:147110055..147110129,-!p1@ZIC4!0.62!3.19!ZIC4;;chr3:147127142..147127168,+!p1@ZIC1!0.62!3.19!ZIC1;;chr5:142780237..142780261,-!p7@NR3C1!0.62!3.19!NR3C1;;chr5:3595961..3595975,+!p3@IRX1!0.62!3.19!IRX1;;chr15:96874012..96874042,+!p2@NR2F2!0.61!32.77!NR2F2;;chr3:178789522..178789564,-!p2@ZMAT3!0.61!27.10!ZMAT3;;chr11:65687158..65687216,+!p4@DRAP1!0.61!20.82!DRAP1;;chr1:164528911..164528940,+!p7@PBX1!0.61!4.95!PBX1;;chr15:37392534..37392562,-!p10@MEIS2!0.61!3.40!MEIS2;;chr1:44513995..44514031,+!p1@KLF17!0.61!3.09!KLF17;;chr17:46687959..46688007,-!p2@HOXB7!0.60!4.43!HOXB7;;chr5:43067636..43067674,+!p6@ZNF131!0.60!4.33!ZNF131;;chr6:85473156..85473210,-!p2@TBX18!0.60!3.81!TBX18;;chr15:37392576..37392589,-!p12@MEIS2!0.60!3.81!MEIS2;;chr18:52969674..52969685,-!p24@TCF4!0.60!2.99!TCF4;;chr1:170632137..170632172,+!p10@PRRX1!0.60!2.99!PRRX1;;chr19:13106214..13106382,+!p1@NFIX!0.59!82.85!NFIX;;chr15:96873984..96873999,+!p3@NR2F2!0.59!25.56!NR2F2;;chr2:119604456..119604501,-!p2@EN1!0.59!2.89!EN1;;chr11:46299443..46299459,+!p4@CREB3L1!0.59!2.89!CREB3L1;;chr11:65686952..65686975,+!p5@DRAP1!0.58!18.76!DRAP1;;chr3:168864315..168864339,-!p2@MECOM!0.58!5.05!MECOM;;chr12:80085061..80085119,-!p6@PAWR!0.58!4.95!PAWR;;chr15:37390482..37390572,-!p7@MEIS2!0.58!4.12!MEIS2;;chr1:23696448..23696453,-!p5@ZNF436!0.58!3.61!ZNF436;;chr1:119530857..119530884,-!p4@TBX15!0.58!2.78!TBX15;;chr1:170632115..170632136,+!p9@PRRX1!0.58!2.78!PRRX1;;chr12:124873357..124873401,-!p1@NCOR2!0.57!38.75!NCOR2;;chr14:62162285..62162296,+!p3@HIF1A!0.57!17.00!HIF1A;;chr21:36260343..36260402,-!p6@RUNX1!0.57!4.84!RUNX1;;chr10:63809134..63809145,+!p6@ARID5B!0.56!7.01!ARID5B;;chr8:106330696..106330719,+!p2@ZFPM2!0.56!3.61!ZFPM2;;chr5:72743793..72743855,-!p4@FOXD1!0.56!3.19!FOXD1;;chr17:1958388..1958404,+!p1@HIC1!0.55!20.10!HIC1;;chr1:158969752..158969780,+!p6@IFI16!0.55!4.95!IFI16;;chr21:36260295..36260310,-!p3@RUNX1!0.55!4.53!RUNX1;;chr3:157824001..157824078,-!p2@SHOX2!0.55!2.58!SHOX2;;chr6:100912752..100912778,-!p2@SIM1!0.55!2.58!SIM1;;chr6:34204921..34204939,+!p3@HMGA1!0.54!95.63!HMGA1;;chr3:150126759..150126784,+!p2@TSC22D2!0.54!14.02!TSC22D2;;chr14:73360799..73360817,-!p1@DPF3!0.54!10.31!DPF3;;chr10:63809077..63809089,+!p5@ARID5B!0.54!6.29!ARID5B;;chr15:37391588..37391604,-!p11@MEIS2!0.54!3.40!MEIS2;;chr16:54320617..54320643,-!p3@IRX3!0.54!3.40!IRX3;;chr3:128212033..128212051,-!p1@GATA2!0.54!2.47!GATA2;;chr17:46622070..46622109,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3.CNhs11913.11560-120D3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3.CNhs11913.11560-120D3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3.CNhs11913.11560-120D3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3.CNhs11913.11560-120D3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3.CNhs11913.11560-120D3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11560-120D3 | |id=FF:11560-120D3 | ||
|is_a=EFO:0002091;;FF:0000253 | |is_a=EFO:0002091;;FF:0000253 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11913 | |||
|library_id_phase_based=2:CNhs11913 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11560 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11560 | |||
|name=Fibroblast - skin dystrophia myotonica, donor3 | |name=Fibroblast - skin dystrophia myotonica, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 43: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11913,LSID842,release014,COMPLETED | |profile_hcage=CNhs11913,LSID842,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
Line 58: | Line 79: | ||
|rna_weight_ug=160.002 | |rna_weight_ug=160.002 | ||
|sample_age=18 year old adult | |sample_age=18 year old adult | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 79: | Line 101: | ||
|top_motifs=HBP1_HMGB_SSRP1_UBTF:1.91603984986;ZNF238:1.89125222075;GZF1:1.84968333796;NKX2-2,8:1.68557104435;XBP1:1.48386438007;TAL1_TCF{3,4,12}:1.46013285035;NKX3-1:1.44377022629;NKX3-2:1.32902196339;ESR1:1.26952104397;TEAD1:1.16155867113;KLF4:1.15624177582;ALX4:1.07359651645;PAX1,9:1.05415072625;MYBL2:1.03326677184;HSF1,2:0.984103241421;NR3C1:0.980002141478;TFAP4:0.979835507069;HOX{A5,B5}:0.979182405885;EN1,2:0.946734398849;UFEwm:0.930780606464;HES1:0.871332499934;TP53:0.857322962268;SOX17:0.843496471674;TBX4,5:0.843021221042;HAND1,2:0.829530140165;GFI1B:0.819372821647;NFIX:0.811797874449;GCM1,2:0.804019230789;PDX1:0.795253702683;HMX1:0.794960964583;RXRA_VDR{dimer}:0.756285713157;MAFB:0.743002958677;GFI1:0.738456871415;GTF2I:0.721018821966;NR1H4:0.717219456706;MZF1:0.71660010771;TFAP2{A,C}:0.692530406553;NFATC1..3:0.648773221699;HMGA1,2:0.641324091532;CRX:0.626567508761;SRF:0.621283406229;HIF1A:0.620715449883;STAT1,3:0.609775053978;NANOG{mouse}:0.609126257625;RXR{A,B,G}:0.608254501846;NKX6-1,2:0.594625191618;NFE2L1:0.545091317954;GATA4:0.544767308421;AHR_ARNT_ARNT2:0.539653442471;ELK1,4_GABP{A,B1}:0.531597691821;TLX1..3_NFIC{dimer}:0.516184100029;YY1:0.496551783864;MTE{core}:0.481371111638;ATF6:0.460405410426;SPZ1:0.452806516143;MYB:0.417969837857;PATZ1:0.401956927351;TFDP1:0.394630521955;XCPE1{core}:0.3871023883;PRDM1:0.385943541098;POU3F1..4:0.385425074832;FOX{I1,J2}:0.379689990797;ALX1:0.375852071338;SMAD1..7,9:0.363180204979;NRF1:0.357343454925;PRRX1,2:0.355715605587;HOX{A4,D4}:0.354101299847;TFCP2:0.350327463165;ZNF384:0.347261323495;ZBTB6:0.338552585638;ZIC1..3:0.331045592015;EVI1:0.324371116751;MAZ:0.320894384643;ZNF148:0.317976320115;GLI1..3:0.31166586274;PAX5:0.310370504074;PAX8:0.285484609943;IKZF1:0.280693794505;HLF:0.267381213434;FOXD3:0.265910227602;TFAP2B:0.249902293626;EBF1:0.23956251006;CEBPA,B_DDIT3:0.238514808323;NFE2L2:0.216937087004;FOXO1,3,4:0.192872248482;ARID5B:0.188631527112;BACH2:0.185692611316;ZNF143:0.166121558109;MYFfamily:0.162652757365;LEF1_TCF7_TCF7L1,2:0.156217073486;E2F1..5:0.152690676983;MTF1:0.138865986056;GTF2A1,2:0.131375949642;FOXL1:0.125776547499;IRF1,2:0.113897925511;DBP:0.107849893958;FOS_FOS{B,L1}_JUN{B,D}:0.103153974993;NFE2:0.101564757375;RREB1:0.0918995363522;NKX2-3_NKX2-5:0.07380494598;LHX3,4:0.0559503699551;RUNX1..3:0.0346348751123;TEF:-0.000319833403502;POU5F1:-0.00736163130815;EGR1..3:-0.0095196357259;NHLH1,2:-0.00954759661584;PAX3,7:-0.0137867087784;TOPORS:-0.0206624200896;ZFP161:-0.0246958828118;HNF1A:-0.0361475344472;HOX{A6,A7,B6,B7}:-0.0454489645834;AIRE:-0.0761989134082;RFX1:-0.0784930880124;BPTF:-0.0892755194665;ADNP_IRX_SIX_ZHX:-0.0912770847878;TLX2:-0.0939143245837;TBP:-0.109454369922;MED-1{core}:-0.121317893186;DMAP1_NCOR{1,2}_SMARC:-0.126790924103;POU1F1:-0.128519548414;SOX5:-0.129451891416;FOXA2:-0.131697850612;STAT2,4,6:-0.131705399115;ZNF423:-0.134554168151;ELF1,2,4:-0.138668262615;NR6A1:-0.139251284108;CDC5L:-0.149060276063;PBX1:-0.168441486319;FOXM1:-0.183353700142;HIC1:-0.198796964937;MEF2{A,B,C,D}:-0.208972042436;FOSL2:-0.2110124243;SP1:-0.216551110532;bHLH_family:-0.244886126417;FOX{D1,D2}:-0.270998149117;EP300:-0.293738161849;NFIL3:-0.308847078098;FOXN1:-0.315321401097;NKX2-1,4:-0.330733714203;AR:-0.336671937978;HNF4A_NR2F1,2:-0.340207438402;TGIF1:-0.344873829953;REST:-0.349341484162;NFY{A,B,C}:-0.3501227058;SPI1:-0.358172901525;CREB1:-0.364973188442;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.36671926744;IRF7:-0.383209624514;NFKB1_REL_RELA:-0.392766796851;PPARG:-0.404442306252;ONECUT1,2:-0.417239648692;PAX2:-0.418526717876;ETS1,2:-0.432892385211;RBPJ:-0.435812945183;BREu{core}:-0.446404440395;ATF5_CREB3:-0.479147087995;SPIB:-0.49150607869;SOX2:-0.494391837445;NANOG:-0.517597917542;T:-0.521821862652;SREBF1,2:-0.531027187371;JUN:-0.539030629059;CUX2:-0.54825766829;ESRRA:-0.590944201083;STAT5{A,B}:-0.597189916281;POU6F1:-0.601313905661;ZBTB16:-0.619804898022;ATF4:-0.627451908452;FOXP1:-0.635431680314;VSX1,2:-0.663726641378;RFX2..5_RFXANK_RFXAP:-0.687308926619;ATF2:-0.697078294654;GATA6:-0.707002924573;FOXQ1:-0.71903268109;FOXP3:-0.768273662468;CDX1,2,4:-0.78143294309;PAX4:-0.78567686705;OCT4_SOX2{dimer}:-0.789715913282;SOX{8,9,10}:-0.80608611362;NR5A1,2:-0.83780725252;ZEB1:-0.843315756639;PAX6:-0.856131424414;SNAI1..3:-0.866914487834;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.878664604424;POU2F1..3:-0.884256957196;PITX1..3:-0.932779729148;FOX{F1,F2,J1}:-0.944380191615;HOXA9_MEIS1:-0.954397946545;RORA:-1.01053154738;IKZF2:-1.15637128274;LMO2:-1.32655330165;MYOD1:-1.4637426589 | |top_motifs=HBP1_HMGB_SSRP1_UBTF:1.91603984986;ZNF238:1.89125222075;GZF1:1.84968333796;NKX2-2,8:1.68557104435;XBP1:1.48386438007;TAL1_TCF{3,4,12}:1.46013285035;NKX3-1:1.44377022629;NKX3-2:1.32902196339;ESR1:1.26952104397;TEAD1:1.16155867113;KLF4:1.15624177582;ALX4:1.07359651645;PAX1,9:1.05415072625;MYBL2:1.03326677184;HSF1,2:0.984103241421;NR3C1:0.980002141478;TFAP4:0.979835507069;HOX{A5,B5}:0.979182405885;EN1,2:0.946734398849;UFEwm:0.930780606464;HES1:0.871332499934;TP53:0.857322962268;SOX17:0.843496471674;TBX4,5:0.843021221042;HAND1,2:0.829530140165;GFI1B:0.819372821647;NFIX:0.811797874449;GCM1,2:0.804019230789;PDX1:0.795253702683;HMX1:0.794960964583;RXRA_VDR{dimer}:0.756285713157;MAFB:0.743002958677;GFI1:0.738456871415;GTF2I:0.721018821966;NR1H4:0.717219456706;MZF1:0.71660010771;TFAP2{A,C}:0.692530406553;NFATC1..3:0.648773221699;HMGA1,2:0.641324091532;CRX:0.626567508761;SRF:0.621283406229;HIF1A:0.620715449883;STAT1,3:0.609775053978;NANOG{mouse}:0.609126257625;RXR{A,B,G}:0.608254501846;NKX6-1,2:0.594625191618;NFE2L1:0.545091317954;GATA4:0.544767308421;AHR_ARNT_ARNT2:0.539653442471;ELK1,4_GABP{A,B1}:0.531597691821;TLX1..3_NFIC{dimer}:0.516184100029;YY1:0.496551783864;MTE{core}:0.481371111638;ATF6:0.460405410426;SPZ1:0.452806516143;MYB:0.417969837857;PATZ1:0.401956927351;TFDP1:0.394630521955;XCPE1{core}:0.3871023883;PRDM1:0.385943541098;POU3F1..4:0.385425074832;FOX{I1,J2}:0.379689990797;ALX1:0.375852071338;SMAD1..7,9:0.363180204979;NRF1:0.357343454925;PRRX1,2:0.355715605587;HOX{A4,D4}:0.354101299847;TFCP2:0.350327463165;ZNF384:0.347261323495;ZBTB6:0.338552585638;ZIC1..3:0.331045592015;EVI1:0.324371116751;MAZ:0.320894384643;ZNF148:0.317976320115;GLI1..3:0.31166586274;PAX5:0.310370504074;PAX8:0.285484609943;IKZF1:0.280693794505;HLF:0.267381213434;FOXD3:0.265910227602;TFAP2B:0.249902293626;EBF1:0.23956251006;CEBPA,B_DDIT3:0.238514808323;NFE2L2:0.216937087004;FOXO1,3,4:0.192872248482;ARID5B:0.188631527112;BACH2:0.185692611316;ZNF143:0.166121558109;MYFfamily:0.162652757365;LEF1_TCF7_TCF7L1,2:0.156217073486;E2F1..5:0.152690676983;MTF1:0.138865986056;GTF2A1,2:0.131375949642;FOXL1:0.125776547499;IRF1,2:0.113897925511;DBP:0.107849893958;FOS_FOS{B,L1}_JUN{B,D}:0.103153974993;NFE2:0.101564757375;RREB1:0.0918995363522;NKX2-3_NKX2-5:0.07380494598;LHX3,4:0.0559503699551;RUNX1..3:0.0346348751123;TEF:-0.000319833403502;POU5F1:-0.00736163130815;EGR1..3:-0.0095196357259;NHLH1,2:-0.00954759661584;PAX3,7:-0.0137867087784;TOPORS:-0.0206624200896;ZFP161:-0.0246958828118;HNF1A:-0.0361475344472;HOX{A6,A7,B6,B7}:-0.0454489645834;AIRE:-0.0761989134082;RFX1:-0.0784930880124;BPTF:-0.0892755194665;ADNP_IRX_SIX_ZHX:-0.0912770847878;TLX2:-0.0939143245837;TBP:-0.109454369922;MED-1{core}:-0.121317893186;DMAP1_NCOR{1,2}_SMARC:-0.126790924103;POU1F1:-0.128519548414;SOX5:-0.129451891416;FOXA2:-0.131697850612;STAT2,4,6:-0.131705399115;ZNF423:-0.134554168151;ELF1,2,4:-0.138668262615;NR6A1:-0.139251284108;CDC5L:-0.149060276063;PBX1:-0.168441486319;FOXM1:-0.183353700142;HIC1:-0.198796964937;MEF2{A,B,C,D}:-0.208972042436;FOSL2:-0.2110124243;SP1:-0.216551110532;bHLH_family:-0.244886126417;FOX{D1,D2}:-0.270998149117;EP300:-0.293738161849;NFIL3:-0.308847078098;FOXN1:-0.315321401097;NKX2-1,4:-0.330733714203;AR:-0.336671937978;HNF4A_NR2F1,2:-0.340207438402;TGIF1:-0.344873829953;REST:-0.349341484162;NFY{A,B,C}:-0.3501227058;SPI1:-0.358172901525;CREB1:-0.364973188442;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.36671926744;IRF7:-0.383209624514;NFKB1_REL_RELA:-0.392766796851;PPARG:-0.404442306252;ONECUT1,2:-0.417239648692;PAX2:-0.418526717876;ETS1,2:-0.432892385211;RBPJ:-0.435812945183;BREu{core}:-0.446404440395;ATF5_CREB3:-0.479147087995;SPIB:-0.49150607869;SOX2:-0.494391837445;NANOG:-0.517597917542;T:-0.521821862652;SREBF1,2:-0.531027187371;JUN:-0.539030629059;CUX2:-0.54825766829;ESRRA:-0.590944201083;STAT5{A,B}:-0.597189916281;POU6F1:-0.601313905661;ZBTB16:-0.619804898022;ATF4:-0.627451908452;FOXP1:-0.635431680314;VSX1,2:-0.663726641378;RFX2..5_RFXANK_RFXAP:-0.687308926619;ATF2:-0.697078294654;GATA6:-0.707002924573;FOXQ1:-0.71903268109;FOXP3:-0.768273662468;CDX1,2,4:-0.78143294309;PAX4:-0.78567686705;OCT4_SOX2{dimer}:-0.789715913282;SOX{8,9,10}:-0.80608611362;NR5A1,2:-0.83780725252;ZEB1:-0.843315756639;PAX6:-0.856131424414;SNAI1..3:-0.866914487834;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.878664604424;POU2F1..3:-0.884256957196;PITX1..3:-0.932779729148;FOX{F1,F2,J1}:-0.944380191615;HOXA9_MEIS1:-0.954397946545;RORA:-1.01053154738;IKZF2:-1.15637128274;LMO2:-1.32655330165;MYOD1:-1.4637426589 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11560-120D3;search_select_hide=table117:FF:11560-120D3 | |||
}} | }} |
Latest revision as of 18:09, 4 June 2020
Name: | Fibroblast - skin dystrophia myotonica, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11913 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11913
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11913
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.525 |
10 | 10 | 0.948 |
100 | 100 | 0.399 |
101 | 101 | 0.242 |
102 | 102 | 0.0377 |
103 | 103 | 0.826 |
104 | 104 | 0.677 |
105 | 105 | 0.375 |
106 | 106 | 0.0605 |
107 | 107 | 0.469 |
108 | 108 | 0.701 |
109 | 109 | 0.7 |
11 | 11 | 0.557 |
110 | 110 | 0.64 |
111 | 111 | 0.121 |
112 | 112 | 0.968 |
113 | 113 | 9.16156e-4 |
114 | 114 | 0.907 |
115 | 115 | 0.326 |
116 | 116 | 0.615 |
117 | 117 | 0.972 |
118 | 118 | 0.765 |
119 | 119 | 0.143 |
12 | 12 | 0.32 |
120 | 120 | 0.591 |
121 | 121 | 0.508 |
122 | 122 | 0.114 |
123 | 123 | 2.09756e-5 |
124 | 124 | 0.964 |
125 | 125 | 0.83 |
126 | 126 | 0.533 |
127 | 127 | 0.452 |
128 | 128 | 0.139 |
129 | 129 | 0.509 |
13 | 13 | 0.311 |
130 | 130 | 0.0821 |
131 | 131 | 0.635 |
132 | 132 | 0.497 |
133 | 133 | 0.679 |
134 | 134 | 0.39 |
135 | 135 | 0.44 |
136 | 136 | 0.152 |
137 | 137 | 0.371 |
138 | 138 | 0.424 |
139 | 139 | 0.0422 |
14 | 14 | 0.291 |
140 | 140 | 0.293 |
141 | 141 | 0.0757 |
142 | 142 | 0.841 |
143 | 143 | 0.574 |
144 | 144 | 0.77 |
145 | 145 | 0.768 |
146 | 146 | 0.652 |
147 | 147 | 0.136 |
148 | 148 | 0.0548 |
149 | 149 | 0.101 |
15 | 15 | 0.127 |
150 | 150 | 0.372 |
151 | 151 | 0.238 |
152 | 152 | 0.365 |
153 | 153 | 0.366 |
154 | 154 | 0.754 |
155 | 155 | 0.00409 |
156 | 156 | 0.673 |
157 | 157 | 0.217 |
158 | 158 | 0.00256 |
159 | 159 | 0.363 |
16 | 16 | 0.428 |
160 | 160 | 0.792 |
161 | 161 | 0.388 |
162 | 162 | 0.658 |
163 | 163 | 0.858 |
164 | 164 | 0.993 |
165 | 165 | 0.0804 |
166 | 166 | 0.0571 |
167 | 167 | 0.348 |
168 | 168 | 0.558 |
169 | 169 | 0.111 |
17 | 17 | 0.894 |
18 | 18 | 0.353 |
19 | 19 | 0.0432 |
2 | 2 | 0.413 |
20 | 20 | 0.48 |
21 | 21 | 0.148 |
22 | 22 | 0.382 |
23 | 23 | 0.886 |
24 | 24 | 0.918 |
25 | 25 | 0.305 |
26 | 26 | 0.488 |
27 | 27 | 0.951 |
28 | 28 | 0.504 |
29 | 29 | 0.948 |
3 | 3 | 0.88 |
30 | 30 | 0.138 |
31 | 31 | 0.717 |
32 | 32 | 1.68831e-9 |
33 | 33 | 0.58 |
34 | 34 | 0.971 |
35 | 35 | 0.444 |
36 | 36 | 0.0399 |
37 | 37 | 0.191 |
38 | 38 | 0.297 |
39 | 39 | 0.543 |
4 | 4 | 0.418 |
40 | 40 | 0.0217 |
41 | 41 | 0.558 |
42 | 42 | 0.72 |
43 | 43 | 0.259 |
44 | 44 | 0.547 |
45 | 45 | 0.569 |
46 | 46 | 0.816 |
47 | 47 | 0.462 |
48 | 48 | 0.544 |
49 | 49 | 0.0749 |
5 | 5 | 0.76 |
50 | 50 | 0.607 |
51 | 51 | 0.743 |
52 | 52 | 0.53 |
53 | 53 | 0.223 |
54 | 54 | 0.781 |
55 | 55 | 0.19 |
56 | 56 | 0.868 |
57 | 57 | 0.884 |
58 | 58 | 0.11 |
59 | 59 | 0.531 |
6 | 6 | 0.266 |
60 | 60 | 0.124 |
61 | 61 | 0.766 |
62 | 62 | 0.317 |
63 | 63 | 0.754 |
64 | 64 | 0.422 |
65 | 65 | 0.578 |
66 | 66 | 0.848 |
67 | 67 | 0.642 |
68 | 68 | 0.944 |
69 | 69 | 0.734 |
7 | 7 | 0.11 |
70 | 70 | 0.361 |
71 | 71 | 0.69 |
72 | 72 | 0.434 |
73 | 73 | 0.393 |
74 | 74 | 0.246 |
75 | 75 | 0.726 |
76 | 76 | 0.955 |
77 | 77 | 0.212 |
78 | 78 | 0.102 |
79 | 79 | 0.0857 |
8 | 8 | 0.695 |
80 | 80 | 0.798 |
81 | 81 | 0.37 |
82 | 82 | 0.472 |
83 | 83 | 0.0952 |
84 | 84 | 0.38 |
85 | 85 | 0.265 |
86 | 86 | 0.473 |
87 | 87 | 0.373 |
88 | 88 | 0.559 |
89 | 89 | 0.787 |
9 | 9 | 0.552 |
90 | 90 | 0.656 |
91 | 91 | 0.568 |
92 | 92 | 0.541 |
93 | 93 | 0.783 |
94 | 94 | 0.787 |
95 | 95 | 0.738 |
96 | 96 | 0.909 |
97 | 97 | 0.484 |
98 | 98 | 0.105 |
99 | 99 | 0.0143 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11913
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000253 human fibroblast- skin dystrophia myotonica sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
DOID: Disease
4 (disease)
17 (musculoskeletal system disease)
450 (myotonic disease)
7 (disease of anatomical entity)
66 (muscle tissue disease)
423 (myopathy)
0080000 (muscular disease)
11722 (myotonic dystrophy)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000253 (human fibroblast- skin dystrophia myotonica sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)