FF:11567-120E1: Difference between revisions

Latest revision as of 18:09, 4 June 2020

Name:	Mast cell, donor4
Species:	Human (Homo sapiens)
Library ID:	CNhs12592
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	67 years old adult
sex	female
age	76
cell type	mast cell
cell line	NA
company	NA
collaboration	Sven Guhl (Charite Germany)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	BsMC-V
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004803

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12592		CAGE		DRX008334		DRR009206

Accession ID Hg19

Library id		BAM		CTSS
CNhs12592		DRZ000631		DRZ002016

Accession ID Hg38

Library id		BAM		CTSS
CNhs12592		DRZ011981		DRZ013366

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004803

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10008.GTTTCG		sRNA-Seq		DRX037126		DRR041492

Accession ID Hg19

Library id		BAM		CTSS
SRhi10008.GTTTCG		DRZ007134

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0.303
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0429
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0211
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.28
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0516
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0.825
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.245
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0516
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0978
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.48
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0.119
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.964
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0.0978
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.354
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.445
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.151
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0436
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.0175
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0885
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.401
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.139
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.268
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.37
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.679
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.431
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	1.121
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0978
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.553
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.94
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.303
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0512
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0516
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.0516
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	1.061
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.571
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.5
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.0978
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.375
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.159
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.319
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0.275
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.378
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.0978
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12592

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0148
MA0003.1	MA0003.1	0.371
MA0004.1	MA0004.1	0.739
MA0006.1	MA0006.1	0.795
MA0007.1	MA0007.1	0.427
MA0009.1	MA0009.1	0.285
MA0014.1	MA0014.1	0.604
MA0017.1	MA0017.1	0.0415
MA0018.2	MA0018.2	5.07102e-12
MA0019.1	MA0019.1	0.235
MA0024.1	MA0024.1	0.488
MA0025.1	MA0025.1	1.153e-4
MA0027.1	MA0027.1	0.585
MA0028.1	MA0028.1	0.309
MA0029.1	MA0029.1	8.01018e-4
MA0030.1	MA0030.1	1.7294e-5
MA0031.1	MA0031.1	0.0719
MA0035.2	MA0035.2	9.80771e-10
MA0038.1	MA0038.1	0.0309
MA0039.2	MA0039.2	0.00599
MA0040.1	MA0040.1	0.869
MA0041.1	MA0041.1	0.273
MA0042.1	MA0042.1	0.117
MA0043.1	MA0043.1	8.26106e-10
MA0046.1	MA0046.1	0.691
MA0047.2	MA0047.2	0.433
MA0048.1	MA0048.1	0.95
MA0050.1	MA0050.1	0.294
MA0051.1	MA0051.1	0.997
MA0052.1	MA0052.1	1.22969e-4
MA0055.1	MA0055.1	0.8
MA0057.1	MA0057.1	0.355
MA0058.1	MA0058.1	0.248
MA0059.1	MA0059.1	0.203
MA0060.1	MA0060.1	0.778
MA0061.1	MA0061.1	9.56687e-19
MA0062.2	MA0062.2	2.74427e-6
MA0065.2	MA0065.2	0.0749
MA0066.1	MA0066.1	0.589
MA0067.1	MA0067.1	2.05574e-9
MA0068.1	MA0068.1	3.25545e-4
MA0069.1	MA0069.1	0.787
MA0070.1	MA0070.1	0.157
MA0071.1	MA0071.1	0.655
MA0072.1	MA0072.1	0.467
MA0073.1	MA0073.1	0.285
MA0074.1	MA0074.1	0.62
MA0076.1	MA0076.1	0.248
MA0077.1	MA0077.1	0.505
MA0078.1	MA0078.1	0.644
MA0079.2	MA0079.2	0.00454
MA0080.2	MA0080.2	2.50925e-11
MA0081.1	MA0081.1	6.61957e-4
MA0083.1	MA0083.1	0.269
MA0084.1	MA0084.1	0.746
MA0087.1	MA0087.1	0.937
MA0088.1	MA0088.1	0.00929
MA0090.1	MA0090.1	0.00427
MA0091.1	MA0091.1	0.288
MA0092.1	MA0092.1	0.417
MA0093.1	MA0093.1	0.698
MA0099.2	MA0099.2	2.87943e-10
MA0100.1	MA0100.1	0.732
MA0101.1	MA0101.1	9.2531e-18
MA0102.2	MA0102.2	0.31
MA0103.1	MA0103.1	0.00546
MA0104.2	MA0104.2	0.428
MA0105.1	MA0105.1	6.22339e-6
MA0106.1	MA0106.1	0.0167
MA0107.1	MA0107.1	1.31194e-19
MA0108.2	MA0108.2	1.2152e-4
MA0111.1	MA0111.1	0.284
MA0112.2	MA0112.2	0.526
MA0113.1	MA0113.1	0.538
MA0114.1	MA0114.1	0.0377
MA0115.1	MA0115.1	0.649
MA0116.1	MA0116.1	0.0675
MA0117.1	MA0117.1	0.0054
MA0119.1	MA0119.1	0.0498
MA0122.1	MA0122.1	0.656
MA0124.1	MA0124.1	0.661
MA0125.1	MA0125.1	0.225
MA0131.1	MA0131.1	0.128
MA0135.1	MA0135.1	0.201
MA0136.1	MA0136.1	2.36141e-10
MA0137.2	MA0137.2	0.499
MA0138.2	MA0138.2	0.757
MA0139.1	MA0139.1	0.523
MA0140.1	MA0140.1	4.52996e-7
MA0141.1	MA0141.1	0.187
MA0142.1	MA0142.1	0.142
MA0143.1	MA0143.1	0.266
MA0144.1	MA0144.1	0.701
MA0145.1	MA0145.1	0.514
MA0146.1	MA0146.1	0.0301
MA0147.1	MA0147.1	0.123
MA0148.1	MA0148.1	0.458
MA0149.1	MA0149.1	0.545
MA0150.1	MA0150.1	0.00885
MA0152.1	MA0152.1	0.149
MA0153.1	MA0153.1	0.257
MA0154.1	MA0154.1	0.608
MA0155.1	MA0155.1	0.784
MA0156.1	MA0156.1	7.00752e-5
MA0157.1	MA0157.1	0.82
MA0159.1	MA0159.1	0.502
MA0160.1	MA0160.1	0.268
MA0162.1	MA0162.1	0.0384
MA0163.1	MA0163.1	0.097
MA0164.1	MA0164.1	0.667
MA0258.1	MA0258.1	0.842
MA0259.1	MA0259.1	0.48

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12592

Novel motif	Logo	P-value
1	1	0.154
10	10	0.555
100	100	0.279
101	101	0.365
102	102	0.772
103	103	0.254
104	104	0.876
105	105	0.307
106	106	0.511
107	107	0.01
108	108	0.162
109	109	0.995
11	11	0.391
110	110	0.265
111	111	0.102
112	112	0.922
113	113	0.434
114	114	0.0844
115	115	0.559
116	116	0.115
117	117	0.0393
118	118	0.283
119	119	0.114
12	12	0.653
120	120	0.0854
121	121	0.269
122	122	0.269
123	123	0.477
124	124	0.0562
125	125	0.204
126	126	0.505
127	127	0.826
128	128	0.704
129	129	0.0175
13	13	0.666
130	130	0.538
131	131	0.851
132	132	0.125
133	133	0.184
134	134	0.497
135	135	0.859
136	136	0.0951
137	137	0.0708
138	138	0.17
139	139	0.657
14	14	0.717
140	140	0.184
141	141	0.183
142	142	0.107
143	143	0.658
144	144	0.904
145	145	0.321
146	146	0.405
147	147	0.164
148	148	0.608
149	149	0.104
15	15	0.459
150	150	0.846
151	151	0.389
152	152	0.0103
153	153	0.482
154	154	0.951
155	155	0.262
156	156	0.822
157	157	0.868
158	158	0.381
159	159	0.583
16	16	0.233
160	160	0.0542
161	161	0.398
162	162	0.0658
163	163	0.196
164	164	0.36
165	165	0.684
166	166	0.0304
167	167	0.425
168	168	0.116
169	169	0.697
17	17	0.681
18	18	0.269
19	19	0.209
2	2	0.114
20	20	0.325
21	21	0.53
22	22	0.591
23	23	0.993
24	24	0.987
25	25	0.837
26	26	0.407
27	27	0.213
28	28	0.525
29	29	0.317
3	3	0.234
30	30	0.494
31	31	0.453
32	32	0.0034
33	33	0.671
34	34	0.796
35	35	0.0806
36	36	0.931
37	37	0.433
38	38	0.739
39	39	0.552
4	4	0.43
40	40	0.619
41	41	0.686
42	42	0.266
43	43	0.39
44	44	0.0857
45	45	0.757
46	46	0.243
47	47	0.314
48	48	0.221
49	49	0.432
5	5	0.616
50	50	0.958
51	51	0.954
52	52	0.95
53	53	0.967
54	54	0.902
55	55	0.471
56	56	0.566
57	57	0.0884
58	58	0.703
59	59	0.897
6	6	0.801
60	60	0.962
61	61	0.694
62	62	0.804
63	63	0.313
64	64	0.465
65	65	0.542
66	66	0.899
67	67	0.383
68	68	0.536
69	69	0.206
7	7	0.842
70	70	0.318
71	71	0.369
72	72	0.47
73	73	0.05
74	74	0.00461
75	75	0.649
76	76	0.998
77	77	0.085
78	78	0.649
79	79	0.428
8	8	0.1
80	80	0.57
81	81	0.233
82	82	0.76
83	83	0.841
84	84	0.14
85	85	0.914
86	86	0.0696
87	87	0.199
88	88	0.446
89	89	0.0248
9	9	0.76
90	90	0.197
91	91	0.586
92	92	0.335
93	93	0.33
94	94	0.86
95	95	0.0199
96	96	0.226
97	97	0.59
98	98	0.374
99	99	5.91839e-5

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12592

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0000261 mast cell- heparinase treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0002274 (histamine secreting cell)
0000219 (motile cell)
0000163 (endocrine cell)
0000457 (biogenic amine secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000097 (mast cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000260 (mast cell sample)
0000261 (mast cell- heparinase treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00004803
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000151,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000004,CL:0000134,CL:0000457,CL:0000738,CL:0000255,CL:0002191,CL:0002031,CL:0000037,CL:0000566,CL:0000049,CL:0000557,CL:0000097,CL:0000837,CL:0000831,CL:0002028
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004803
+|accession_numbers=CAGE;DRX008334;DRR009206;DRZ000631;DRZ002016;DRZ011981;DRZ013366
+|accession_numbers_RNASeq=sRNA-Seq;DRX037126;DRR041492;DRZ007134
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000457,CL:0000738,CL:0000255,CL:0000097
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000260,FF:0000261
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!3.29!1944.13!GATA2;;chr19:45971246..45971265,+!p1@FOSB!2.85!12057.29!FOSB;;chr14:75745523..75745537,+!p1@FOS!2.14!15015.91!FOS;;chr2:157189180..157189290,-!p1@NR4A2!2.10!612.53!NR4A2;;chr12:52445218..52445237,+!p1@NR4A1!2.08!1418.33!NR4A1;;chr14:35872453..35872485,-!p2@NFKBIA!1.99!227.49!NFKBIA;;chr18:77155922..77155939,+!p1@NFATC1!1.97!240.62!NFATC1;;chr3:128206762..128206781,-!p2@GATA2!1.94!504.09!GATA2;;chr21:39870339..39870443,-!p1@ERG!1.89!76.00!ERG;;chr1:59249688..59249703,-!p3@JUN!1.88!422.53!JUN;;chr19:45971060..45971122,+!p3@FOSB!1.88!74.86!FOSB;;chr14:75988771..75988826,+!p1@BATF!1.87!95.19!BATF;;chr14:75746722..75746777,+!p2@FOS!1.87!93.17!FOS;;chr8:81397820..81397836,+!p2@ZBTB10!1.85!86.60!ZBTB10;;chr9:3525727..3525828,-!p2@RFX3!1.83!166.14!RFX3;;chr20:50159198..50159299,-!p1@NFATC2!1.82!92.54!NFATC2;;chr6:135502501..135502546,+!p1@MYB!1.82!77.26!MYB;;chr3:128205876..128205904,-!p4@GATA2!1.82!65.77!GATA2;;chr17:38497662..38497713,+!p4@RARA!1.80!71.83!RARA;;chr9:102584159..102584174,+!p2@NR4A3!1.78!104.65!NR4A3;;chr1:92951607..92951661,-!p1@GFI1!1.78!59.71!GFI1;;chr2:157189617..157189667,-!p4@NR4A2!1.78!59.59!NR4A2;;chr7:28725740..28725778,+!p1@CREB5!1.77!486.92!CREB5;;chr19:54058073..54058088,+!p1@ZNF331!1.76!56.18!ZNF331;;chr8:22550982..22550999,-!p1@EGR3!1.75!149.60!EGR3;;chrX:48644984..48645005,+!p1@GATA1!1.73!53.27!GATA1;;chr19:18391615..18391637,-!p5@JUND!1.71!65.65!JUND;;chr7:50343634..50343717,+!p2@IKZF1!1.71!50.24!IKZF1;;chr19:13213511..13213545,-!p2@LYL1!1.69!52.39!LYL1;;chr1:25256756..25256774,-!p1@RUNX3!1.68!85.59!RUNX3;;chr3:69788576..69788648,+!p1@MITF!1.66!227.87!MITF;;chr2:145277640..145277771,-!p1@ZEB2!1.65!559.13!ZEB2;;chr3:63953435..63953499,+!p1@ATXN7!1.65!43.30!ATXN7;;chr14:35873947..35873965,-!p1@NFKBIA!1.64!2553.25!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.63!270.79!REL;;chr7:50344251..50344288,+!p3@IKZF1!1.60!38.76!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.60!38.38!IKZF1;;chr2:145271342..145271377,-!p5@ZEB2!1.59!37.62!ZEB2;;chrX:106960285..106960299,-!p1@TSC22D3!1.57!918.54!TSC22D3;;chr19:36391434..36391450,-!p1@NFKBID!1.57!69.69!NFKBID;;chr7:138666053..138666146,-!p1@KIAA1549!1.56!139.88!KIAA1549;;chr19:45972701..45972774,+!p2@FOSB!1.55!47.09!FOSB;;chr12:124968706..124968748,-!p18@NCOR2!1.55!34.46!NCOR2;;chr11:47400078..47400106,-!p1@SPI1!1.55!34.21!SPI1;;chr14:75988831..75988847,+!p2@BATF!1.55!34.09!BATF;;chr12:72056800..72056834,+!p1@THAP2!1.54!44.56!THAP2;;chr19:16435705..16435726,+!p3@KLF2!1.54!33.71!KLF2;;chr14:75746664..75746683,+!p7@FOS!1.54!33.58!FOS;;chr1:59249707..59249727,-!p1@JUN!1.53!1311.66!JUN;;chr1:204042233..204042249,+!p1@SOX13!1.53!198.33!SOX13;;chr8:81397876..81397898,+!p5@ZBTB10!1.53!38.50!ZBTB10;;chr1:59249732..59249749,-!p2@JUN!1.52!366.86!JUN;;chr1:47697881..47697910,-!p4@TAL1!1.52!32.19!TAL1;;chr3:39195037..39195069,-!p2@CSRNP1!1.51!187.22!CSRNP1;;chr7:28725715..28725727,+!p3@CREB5!1.51!36.86!CREB5;;chr14:75746340..75746368,+!p3@FOS!1.50!30.80!FOS;;chr19:16435625..16435682,+!p1@KLF2!1.49!918.54!KLF2;;chr10:104154246..104154347,+!p3@NFKB2!1.49!175.35!NFKB2;;chr3:128205779..128205797,-!p5@GATA2!1.49!30.05!GATA2;;chr3:39195075..39195088,-!p1@CSRNP1!1.48!175.22!CSRNP1;;chr10:35484053..35484076,+!p1@CREM!1.48!71.71!CREM;;chr12:52448420..52448460,+!p5@NR4A1!1.48!29.41!NR4A1;;chr1:47695003..47695042,-!p2@TAL1!1.48!29.29!TAL1;;chr10:3827389..3827408,-!p1@KLF6!1.46!2018.87!KLF6;;chr9:135854091..135854159,+!p1@GFI1B!1.45!27.39!GFI1B;;chr3:141150883..141150961,+!p6@ZBTB38!1.45!27.02!ZBTB38;;chr1:158985493..158985535,+!p4@IFI16!1.44!39.51!IFI16;;chr3:128205801..128205819,-!p6@GATA2!1.44!26.51!GATA2;;chr12:52448213..52448262,+!p6@NR4A1!1.44!26.38!NR4A1;;chr3:101568349..101568365,+!p1@NFKBIZ!1.43!1278.71!NFKBIZ;;chr8:81397846..81397860,+!p3@ZBTB10!1.43!32.19!ZBTB10;;chr19:12902289..12902307,+!p1@JUNB!1.42!5567.17!JUNB;;chr2:157199008..157199023,-!p3@NR4A2!1.42!52.52!NR4A2;;chr8:123793988..123794016,+!p1@ZHX2!1.42!44.31!ZHX2;;chr14:75746705..75746720,+!p8@FOS!1.42!25.50!FOS;;chr13:41593425..41593480,-!p1@ELF1!1.41!152.63!ELF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.40!24.24!ZBED1;;chr19:54041669..54041697,+!p2@ZNF331!1.40!24.11!ZNF331;;chr4:103422499..103422632,+!p1@NFKB1!1.36!439.70!NFKB1;;chr9:110252035..110252057,-!p1@KLF4!1.36!340.73!KLF4;;chr19:16435735..16435773,+!p4@KLF2!1.35!21.59!KLF2;;chr19:18392422..18392440,-!p1@JUND!1.34!2745.52!JUND;;chr10:3827371..3827386,-!p2@KLF6!1.34!169.54!KLF6;;chr12:52430894..52430952,+!p3@NR4A1!1.34!39.39!NR4A1;;chr5:137801160..137801176,+!p1@EGR1!1.33!1934.54!EGR1;;chr2:208394817..208394834,+!p3@CREB1!1.33!79.79!CREB1;;chr12:52448338..52448401,+!p7@NR4A1!1.33!20.20!NR4A1;;chr6:15401104..15401166,+!p5@JARID2!1.32!19.95!JARID2;;chr2:157189317..157189325,-!p8@NR4A2!1.32!19.82!NR4A2;;chr19:6110474..6110551,-!p1@RFX2!1.31!115.39!RFX2;;chr11:128563948..128564003,+!p1@FLI1!1.30!223.95!FLI1;;chr9:102584128..102584144,+!p3@NR4A3!1.30!35.47!NR4A3;;chr16:30406101..30406114,+!p6@ZNF48!1.30!18.94!ZNF48;;chr19:13213555..13213568,-!p5@LYL1!1.30!18.94!LYL1;;chr10:3824125..3824146,-!p12@KLF6!1.29!18.56!KLF6;;chr2:178128250..178128293,-!p6@NFE2L2!1.28!44.56!NFE2L2;;chr12:52431016..52431071,+!p4@NR4A1!1.28!20.96!NR4A1;;chr10:35416142..35416169,+!p3@CREM!1.27!45.95!CREM;;chr10:35484090..35484104,+!p6@CREM!1.27!17.80!CREM;;chr12:52448151..52448200,+!p8@NR4A1!1.27!17.55!NR4A1;;chr14:75747296..75747329,+!p4@FOS!1.27!17.42!FOS;;chr2:208031542..208031595,-!p2@KLF7!1.26!119.55!KLF7;;chr1:151030536..151030549,+!p8@MLLT11!1.25!16.66!MLLT11;;chr19:45974146..45974170,+!p7@FOSB!1.24!16.41!FOSB;;chr18:22932080..22932170,-!p1@ZNF521!1.23!66.28!ZNF521;;chr9:102584262..102584276,+!p1@NR4A3!1.23!35.35!NR4A3;;chr6:135502408..135502459,+!p2@MYB!1.23!18.43!MYB;;chr7:17338266..17338282,+!p1@AHR!1.22!164.87!AHR;;chr3:5021113..5021180,+!p1@BHLHE40!1.21!1031.78!BHLHE40;;chr3:128207349..128207386,-!p3@GATA2!1.21!15.28!GATA2;;chr1:59249645..59249656,-!p4@JUN!1.19!36.23!JUN;;chr14:35873101..35873119,-!p6@NFKBIA!1.19!18.94!NFKBIA;;chr7:63505799..63505904,+!p1@ZNF727!1.19!14.52!ZNF727;;chr14:75747250..75747267,+!p5@FOS!1.19!14.52!FOS;;chr20:34359925..34359991,+!p1@PHF20!1.18!615.05!PHF20;;chr10:3827417..3827428,-!p3@KLF6!1.18!120.06!KLF6;;chr7:17338324..17338341,+!p3@AHR!1.18!46.71!AHR;;chr2:157186630..157186686,-!p6@NR4A2!1.18!14.14!NR4A2;;chr14:75746579..75746605,+!p9@FOS!1.18!14.01!FOS;;chr19:45504688..45504782,+!p1@RELB!1.17!82.18!RELB;;chr8:60031619..60031676,-!p1@TOX!1.17!29.79!TOX;;chr14:35872414..35872425,-!p7@NFKBIA!1.17!15.40!NFKBIA;;chr19:45972203..45972226,+!p5@FOSB!1.17!13.89!FOSB;;chr1:204042275..204042286,+!p4@SOX13!1.16!21.33!SOX13;;chr1:158985469..158985489,+!p7@IFI16!1.16!16.03!IFI16;;chr11:47399996..47400014,-!p4@SPI1!1.16!13.51!SPI1;;chr10:129535441..129535454,+!p1@FOXI2!1.16!13.38!FOXI2;;chr1:204042723..204042784,+!p3@SOX13!1.15!22.09!SOX13;;chr10:3824646..3824677,-!p9@KLF6!1.15!13.26!KLF6;;chr4:106068026..106068084,+!p1@TET2!1.14!114.38!TET2;;chr2:157186177..157186204,-!p14@NR4A2!1.14!12.88!NR4A2;;chr19:45972563..45972577,+!p17@FOSB!1.14!12.88!FOSB;;chr19:45252008..45252024,+!p2@BCL3!1.13!41.41!BCL3;;chr4:103422471..103422495,+!p2@NFKB1!1.13!34.72!NFKB1;;chr19:18391708..18391737,-!p7@JUND!1.13!19.19!JUND;;chr1:37940170..37940190,+!p1@ZC3H12A!1.12!149.22!ZC3H12A;;chr14:35872962..35873025,-!p3@NFKBIA!1.12!30.55!NFKBIA;;chr14:64970670..64970712,-!p3@ZBTB25!1.12!26.26!ZBTB25;;chr2:145274900..145274934,-!p4@ZEB2!1.11!72.84!ZEB2;;chr19:45973107..45973118,+!p15@FOSB!1.11!11.99!FOSB;;chr2:61108650..61108687,+!p2@REL!1.10!57.19!REL;;chr2:61108771..61108789,+!p4@REL!1.10!17.55!REL;;chr12:72056773..72056796,+!p3@THAP2!1.10!15.02!THAP2;;chr7:137620650..137620677,-!p3@CREB3L2!1.10!11.61!CREB3L2;;chr14:75746687..75746702,+!p10@FOS!1.10!11.49!FOS;;chr10:104155480..104155534,+!p2@NFKB2!1.09!74.10!NFKB2;;chr12:26277956..26277980,-!p1@BHLHE41!1.09!40.90!BHLHE41;;chr17:38474489..38474548,+!p1@RARA!1.08!347.29!RARA;;chr15:37390850..37390909,-!p3@MEIS2!1.08!21.84!MEIS2;;chr19:42788611..42788634,+!p2@CIC!1.08!17.55!CIC;;chr19:47616992..47617011,-!p4@ZC3H4!1.07!23.23!ZC3H4;;chr4:81118647..81118666,+!p1@PRDM8!1.07!14.39!PRDM8;;chr2:157186310..157186350,-!p10@NR4A2!1.07!10.86!NR4A2;;chr14:75746624..75746635,+!p12@FOS!1.07!10.86!FOS;;chr11:47400045..47400060,-!p6@SPI1!1.07!10.86!SPI1;;chr14:35874125..35874149,-!p11@NFKBIA!1.07!10.86!NFKBIA;;chr14:64969951..64969972,+!p27@ZBTB1!1.07!10.86!ZBTB1;;chr17:74137321..74137337,-!p1@FOXJ1!1.07!10.73!FOXJ1;;chr19:45974005..45974026,+!p11@FOSB!1.06!10.60!FOSB;;chr14:35874077..35874091,-!p8@NFKBIA!1.06!10.35!NFKBIA;;chr6:44233252..44233296,-!p1@NFKBIE!1.05!101.75!NFKBIE;;chr1:47697539..47697573,-!p3@TAL1!1.05!10.10!TAL1;;chr19:11959532..11959593,+!p1@ZNF439!1.04!38.88!ZNF439;;chr2:157198916..157198978,-!p2@NR4A2!1.04!35.35!NR4A2;;chr6:15246200..15246214,+!p2@JARID2!1.04!27.77!JARID2;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!1.04!16.66!ELK4;;chr10:3824332..3824425,-!p4@KLF6!1.04!16.41!KLF6;;chr18:3449330..3449344,+!p10@TGIF1!1.04!13.26!TGIF1;;chr6:157100031..157100112,+!p2@ARID1B!1.03!53.53!ARID1B;;chr4:87857433..87857472,+!p9@AFF1!1.03!17.42!AFF1;;chr19:13213662..13213686,-!p1@LYL1!1.03!14.39!LYL1;;chr2:28615716..28615733,+!p1@FOSL2!1.02!454.09!FOSL2;;chr21:36421535..36421610,-!p2@RUNX1!1.02!34.09!RUNX1;;chr19:42788636..42788660,+!p1@CIC!1.02!16.03!CIC;;chr9:102584241..102584261,+!p4@NR4A3!1.02!14.77!NR4A3;;chr3:5021026..5021035,+!p5@BHLHE40!1.02!11.74!BHLHE40;;chr8:60031762..60031803,-!p3@TOX!1.01!13.51!TOX;;chr3:39195139..39195150,-!p3@CSRNP1!1.01!11.99!CSRNP1;;chr2:157189101..157189111,-!p15@NR4A2!1.01!9.34!NR4A2;;chr7:99680193..99680204,-!p2@ZNF3!1.01!9.22!ZNF3;;chr16:31885093..31885165,+!p1@ZNF267!1.00!139.25!ZNF267;;chr19:11925071..11925113,+!p1@ZNF440!1.00!66.66!ZNF440;;chr1:47691303..47691319,-!p5@TAL1!1.00!9.09!TAL1;;chr7:17338239..17338262,+!p2@AHR!0.99!66.28!AHR;;chr10:64576105..64576133,-!p1@EGR2!0.99!18.43!EGR2;;chr7:137620684..137620711,-!p4@CR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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor4.CNhs12592.11567-120E1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor4.CNhs12592.11567-120E1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor4.CNhs12592.11567-120E1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor4.CNhs12592.11567-120E1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor4.CNhs12592.11567-120E1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11567-120E1
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000261
+|is_a=EFO:0002091;;FF:0000210;;FF:0000261
+|is_obsolete=
+|library_id=CNhs12592
+|library_id_phase_based=2:CNhs12592
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11567
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTTTCG.11567
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11567
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.GTTTCG.11567
 |name=Mast cell, donor4
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12592,LSID912,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10008,,,
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 |rna_box=120
 |rna_catalog_number=
@@ Line 54: / Line 80: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=120E1
+|rna_tube_id=1.20E+03
 |rna_weight_ug=8.1
+|rnaseq_library_id=SRhi10008.GTTTCG
 |sample_age=76
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 105: @@
 |sample_tissue=skin
 |top_motifs=ATF4:3.51391003542;HSF1,2:2.8749243412;CREB1:2.87261322767;GATA6:2.80230020451;NFKB1_REL_RELA:2.64762221336;PAX2:2.53035315253;PPARG:2.44125801094;ATF5_CREB3:2.34759273311;MAFB:2.30942111065;EGR1..3:2.16878395983;RFX1:1.89792244414;JUN:1.82742050057;FOXN1:1.72879367543;SP1:1.68007988508;SREBF1,2:1.675685373;FOX{D1,D2}:1.52848295959;TFAP2{A,C}:1.49710708594;RFX2..5_RFXANK_RFXAP:1.49511031948;STAT1,3:1.48824236692;ATF2:1.47994786931;PATZ1:1.42368274072;EP300:1.4201416542;ESRRA:1.36050186665;RUNX1..3:1.33411947393;TGIF1:1.23518311395;SPI1:1.18773700872;ATF6:1.16184368506;ELF1,2,4:1.15687437643;SPIB:1.15579776405;CDX1,2,4:1.1200343234;ESR1:1.10008348037;FOSL2:1.0774335123;HOXA9_MEIS1:1.07724037196;FOX{F1,F2,J1}:1.07686031646;XBP1:0.941791735297;DMAP1_NCOR{1,2}_SMARC:0.93369591077;BACH2:0.922465913045;RXRA_VDR{dimer}:0.91398966795;FOS_FOS{B,L1}_JUN{B,D}:0.9058539203;BPTF:0.902946817343;HIF1A:0.902184419822;ETS1,2:0.89808042156;ZNF148:0.836720303192;NFE2:0.832702837199;MAZ:0.815714006196;RXR{A,B,G}:0.811141513221;NFE2L1:0.803777020964;MEF2{A,B,C,D}:0.786574129568;TLX2:0.739567402879;VSX1,2:0.662551494085;TFAP4:0.600548501374;NANOG{mouse}:0.595297509812;MYB:0.5896370732;TFCP2:0.568478790957;FOX{I1,J2}:0.550529262404;NFIL3:0.542457011585;ZNF238:0.518851361098;SPZ1:0.517192515639;TBX4,5:0.472371346434;PAX3,7:0.460569122387;SRF:0.448508623891;SMAD1..7,9:0.444222431528;XCPE1{core}:0.442816372336;bHLH_family:0.439524566437;NFATC1..3:0.436999905527;ALX1:0.431541503244;HBP1_HMGB_SSRP1_UBTF:0.423111571869;ZIC1..3:0.411367098544;AR:0.406290211876;ZFP161:0.40544635304;EBF1:0.346145091799;NHLH1,2:0.340114890203;TFAP2B:0.320180246067;HOX{A6,A7,B6,B7}:0.241951470325;IKZF2:0.233889767151;POU2F1..3:0.218375194826;TBP:0.212617458594;FOXP1:0.173086406523;DBP:0.161553138153;PAX1,9:0.159304859808;HIC1:0.150922427491;PBX1:0.126014267322;GLI1..3:0.119548398654;BREu{core}:0.0806058635248;NFY{A,B,C}:0.0668494913468;SOX2:0.0661599284053;CRX:0.0616632201632;TOPORS:0.0602138207115;NFE2L2:0.0601704689908;HES1:0.0587056873355;FOXQ1:0.0354671863268;MTF1:0.0285240828259;FOXO1,3,4:0.00298598491348;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.03810324362;NR6A1:-0.0676983623632;HMX1:-0.0936486804361;ZBTB6:-0.0942755960409;MTE{core}:-0.111361003208;MED-1{core}:-0.118042833227;MYFfamily:-0.12531161958;PAX5:-0.142169940163;EN1,2:-0.149345842301;RREB1:-0.152876173058;ZNF423:-0.174227435563;GTF2I:-0.217046794137;HLF:-0.238321518819;SOX5:-0.246084665373;REST:-0.285355881357;IRF1,2:-0.294078471197;ELK1,4_GABP{A,B1}:-0.306837683976;PAX6:-0.345852847301;TAL1_TCF{3,4,12}:-0.35134556452;AHR_ARNT_ARNT2:-0.409110435675;PITX1..3:-0.412605299991;POU6F1:-0.416332227023;MZF1:-0.424367325156;CUX2:-0.455463150555;TLX1..3_NFIC{dimer}:-0.46531624371;NRF1:-0.489772671559;HOX{A5,B5}:-0.501193658429;NKX3-2:-0.517290513604;STAT2,4,6:-0.542941373805;ZNF143:-0.554581684837;HNF4A_NR2F1,2:-0.557594490781;E2F1..5:-0.56402382023;ZEB1:-0.573390881076;PAX4:-0.578795847045;TEAD1:-0.58819338684;LHX3,4:-0.588272927484;LEF1_TCF7_TCF7L1,2:-0.621556654997;NR5A1,2:-0.622939154618;GZF1:-0.625802489467;RORA:-0.633858882419;TFDP1:-0.635638434099;TP53:-0.679173438387;CEBPA,B_DDIT3:-0.692585652916;SOX{8,9,10}:-0.710501869993;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.733707126582;HNF1A:-0.734451920334;NANOG:-0.736856548857;IKZF1:-0.74081873833;FOXP3:-0.761850397746;RBPJ:-0.767141653918;ZNF384:-0.797213625435;FOXL1:-0.799450435766;PAX8:-0.804292249048;NKX6-1,2:-0.823673945871;FOXM1:-0.829629179375;PRRX1,2:-0.835009974247;STAT5{A,B}:-0.853384323953;NKX3-1:-0.855463163869;SOX17:-0.881656338194;SNAI1..3:-0.889617135834;ARID5B:-0.892884013448;EVI1:-0.913988099895;IRF7:-0.995416194692;HOX{A4,D4}:-1.03515991543;NKX2-1,4:-1.03577973949;MYOD1:-1.04524273313;GTF2A1,2:-1.04699548323;YY1:-1.0637150237;POU5F1:-1.10726734443;PRDM1:-1.14926993583;NR1H4:-1.15312546067;GATA4:-1.1531286011;OCT4_SOX2{dimer}:-1.15894541623;NFIX:-1.22703485802;HAND1,2:-1.23282036246;FOXD3:-1.26970634901;NKX2-3_NKX2-5:-1.29636227342;NKX2-2,8:-1.30221668359;ZBTB16:-1.32139590042;AIRE:-1.34363486076;UFEwm:-1.37367177004;ONECUT1,2:-1.37732623072;T:-1.42565803318;POU1F1:-1.42829576859;GFI1:-1.42960961916;NR3C1:-1.48044659639;FOXA2:-1.7031802629;MYBL2:-1.82138303022;HMGA1,2:-1.82202856056;GCM1,2:-2.00309044036;GFI1B:-2.12487774376;LMO2:-2.13128080299;CDC5L:-2.26714290362;KLF4:-2.27594824482;ALX4:-2.28837086862;POU3F1..4:-2.31170372913;ADNP_IRX_SIX_ZHX:-2.4021787909;PDX1:-2.64555380772;TEF:-2.70595041965
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11567-120E1;search_select_hide=table117:FF:11567-120E1
 }}

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FF:11567-120E1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:09, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0