FF:11833-124G6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005954 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008556;DRR009428;DRZ000853;DRZ002238;DRZ012203;DRZ013588 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002119,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:2394,DOID:120 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000272,FF:0000273 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor2.CNhs13092.11833-124G6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor2.CNhs13092.11833-124G6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor2.CNhs13092.11833-124G6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor2.CNhs13092.11833-124G6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor2.CNhs13092.11833-124G6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11833-124G6 | |id=FF:11833-124G6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000273 | ||
|is_obsolete= | |||
|library_id=CNhs13092 | |||
|library_id_phase_based=2:CNhs13092 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11833 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11833 | |||
|name=mesenchymal precursor cell - ovarian cancer left ovary, donor2 | |name=mesenchymal precursor cell - ovarian cancer left ovary, donor2 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13092,LSID1001,release013,COMPLETED | |profile_hcage=CNhs13092,LSID1001,release013,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=124 | |rna_box=124 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=37.44685 | |rna_weight_ug=37.44685 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.29552644039826e-221!GO:0005737;cytoplasm;4.19678794684504e-179!GO:0043231;intracellular membrane-bound organelle;5.63052111683419e-148!GO:0043227;membrane-bound organelle;1.01875274448073e-147!GO:0043226;organelle;3.90832750378432e-144!GO:0043229;intracellular organelle;1.12258275196424e-143!GO:0044444;cytoplasmic part;9.96296755645437e-138!GO:0044422;organelle part;9.34084224708017e-107!GO:0044446;intracellular organelle part;2.61084113677401e-105!GO:0044237;cellular metabolic process;5.39008854077628e-76!GO:0044238;primary metabolic process;6.01863727399307e-76!GO:0032991;macromolecular complex;1.05613575132411e-69!GO:0030529;ribonucleoprotein complex;1.11391303431755e-68!GO:0043170;macromolecule metabolic process;3.67633390064194e-67!GO:0005515;protein binding;5.23142630144015e-65!GO:0043233;organelle lumen;6.98538331559145e-58!GO:0031974;membrane-enclosed lumen;6.98538331559145e-58!GO:0005739;mitochondrion;8.79498802658762e-56!GO:0003723;RNA binding;3.83671485052175e-55!GO:0031090;organelle membrane;2.62034328772834e-54!GO:0019538;protein metabolic process;6.82927585989621e-53!GO:0044428;nuclear part;3.34780028784213e-52!GO:0044260;cellular macromolecule metabolic process;4.91877408034337e-48!GO:0044267;cellular protein metabolic process;2.68386391710054e-47!GO:0006412;translation;8.42939254984335e-46!GO:0009058;biosynthetic process;1.62128965795547e-44!GO:0005840;ribosome;1.84769479820151e-43!GO:0015031;protein transport;1.82440177803263e-42!GO:0033036;macromolecule localization;3.03775182480477e-42!GO:0005634;nucleus;3.07950650698748e-41!GO:0005829;cytosol;4.36908503312551e-40!GO:0045184;establishment of protein localization;8.08097894965232e-40!GO:0008104;protein localization;1.58486150391943e-39!GO:0003735;structural constituent of ribosome;9.99422165812716e-39!GO:0044249;cellular biosynthetic process;1.85090058035156e-38!GO:0009059;macromolecule biosynthetic process;2.77821806633221e-38!GO:0006396;RNA processing;7.88059188245092e-38!GO:0044429;mitochondrial part;6.37703396050934e-36!GO:0016043;cellular component organization and biogenesis;9.93776927068163e-36!GO:0033279;ribosomal subunit;1.83638365189905e-35!GO:0043234;protein complex;2.92630222852409e-33!GO:0031967;organelle envelope;4.69903954330322e-33!GO:0031981;nuclear lumen;9.42297550497343e-33!GO:0031975;envelope;1.02596195388239e-32!GO:0010467;gene expression;1.22777340339986e-31!GO:0043283;biopolymer metabolic process;3.78641864454056e-31!GO:0046907;intracellular transport;1.64870256012345e-30!GO:0006886;intracellular protein transport;2.03740432866492e-29!GO:0005783;endoplasmic reticulum;2.36919770396357e-29!GO:0016071;mRNA metabolic process;2.65752534112801e-29!GO:0008380;RNA splicing;1.30992428469356e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.49394046673886e-27!GO:0006397;mRNA processing;3.24668045073662e-25!GO:0012505;endomembrane system;3.45537229295287e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.22300019818413e-24!GO:0005740;mitochondrial envelope;2.93104331420404e-24!GO:0044432;endoplasmic reticulum part;3.91048998144891e-24!GO:0031966;mitochondrial membrane;6.06627511900791e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.37833850875312e-23!GO:0044445;cytosolic part;1.90044355371599e-22!GO:0006457;protein folding;2.16541374872575e-22!GO:0065003;macromolecular complex assembly;3.74482032876763e-21!GO:0006119;oxidative phosphorylation;9.61391141615944e-21!GO:0019866;organelle inner membrane;1.07263875131513e-20!GO:0005654;nucleoplasm;9.96881589964081e-20!GO:0005743;mitochondrial inner membrane;1.62353243201598e-19!GO:0048770;pigment granule;2.61501811329708e-19!GO:0042470;melanosome;2.61501811329708e-19!GO:0051641;cellular localization;4.31498247741557e-19!GO:0005681;spliceosome;4.44113837068751e-19!GO:0051649;establishment of cellular localization;6.79688411185525e-19!GO:0015934;large ribosomal subunit;1.27174673658992e-18!GO:0022607;cellular component assembly;5.64941574440607e-18!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.99071392668633e-18!GO:0005794;Golgi apparatus;8.81318147769636e-18!GO:0015935;small ribosomal subunit;9.07106801391166e-18!GO:0044455;mitochondrial membrane part;9.52948022411247e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.08537465708765e-17!GO:0016462;pyrophosphatase activity;1.11338777913052e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;1.47658340058411e-17!GO:0043285;biopolymer catabolic process;2.42650360755015e-17!GO:0005789;endoplasmic reticulum membrane;3.69940611154544e-17!GO:0017111;nucleoside-triphosphatase activity;3.81663193985625e-17!GO:0006996;organelle organization and biogenesis;7.54376041367103e-17!GO:0030163;protein catabolic process;8.82310219981164e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.53554960166676e-16!GO:0051082;unfolded protein binding;2.12346723580019e-16!GO:0016874;ligase activity;2.28804697221341e-16!GO:0044265;cellular macromolecule catabolic process;2.39998537172225e-16!GO:0022618;protein-RNA complex assembly;2.45207434233262e-16!GO:0019941;modification-dependent protein catabolic process;2.64416371284934e-16!GO:0043632;modification-dependent macromolecule catabolic process;2.64416371284934e-16!GO:0044257;cellular protein catabolic process;2.7096355264277e-16!GO:0044451;nucleoplasm part;2.94378854432241e-16!GO:0009057;macromolecule catabolic process;3.23370125510352e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.42767210683166e-16!GO:0000166;nucleotide binding;7.87901711387588e-16!GO:0051186;cofactor metabolic process;1.22875981226198e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.6500734233069e-15!GO:0008134;transcription factor binding;3.62483176634649e-15!GO:0005730;nucleolus;1.1970308015383e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.72749318942344e-14!GO:0006605;protein targeting;2.13473416821976e-14!GO:0006512;ubiquitin cycle;2.17240921307324e-14!GO:0048193;Golgi vesicle transport;2.95806502391492e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.71192561775443e-14!GO:0005746;mitochondrial respiratory chain;4.01428633229476e-14!GO:0031980;mitochondrial lumen;5.40355152857889e-14!GO:0005759;mitochondrial matrix;5.40355152857889e-14!GO:0012501;programmed cell death;1.05263914553146e-13!GO:0008135;translation factor activity, nucleic acid binding;1.33199755552935e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.91937494444618e-13!GO:0044248;cellular catabolic process;2.08001906632428e-13!GO:0016192;vesicle-mediated transport;2.28156747831954e-13!GO:0006915;apoptosis;2.74960807670462e-13!GO:0005793;ER-Golgi intermediate compartment;2.86814052780441e-13!GO:0006732;coenzyme metabolic process;2.99695075264184e-13!GO:0050136;NADH dehydrogenase (quinone) activity;4.12595622259141e-13!GO:0003954;NADH dehydrogenase activity;4.12595622259141e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.12595622259141e-13!GO:0043228;non-membrane-bound organelle;1.26913550778257e-12!GO:0043232;intracellular non-membrane-bound organelle;1.26913550778257e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.31189253292099e-12!GO:0008219;cell death;1.79194031474588e-12!GO:0016265;death;1.79194031474588e-12!GO:0043412;biopolymer modification;3.08412671949998e-12!GO:0003676;nucleic acid binding;3.29576973686266e-12!GO:0016070;RNA metabolic process;5.88816890028857e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.09798611911724e-11!GO:0045271;respiratory chain complex I;2.09798611911724e-11!GO:0005747;mitochondrial respiratory chain complex I;2.09798611911724e-11!GO:0017076;purine nucleotide binding;2.13737144795703e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.71899142028957e-11!GO:0042773;ATP synthesis coupled electron transport;2.71899142028957e-11!GO:0003743;translation initiation factor activity;3.17588706789912e-11!GO:0006464;protein modification process;3.66944974148196e-11!GO:0032553;ribonucleotide binding;4.2419789603311e-11!GO:0032555;purine ribonucleotide binding;4.2419789603311e-11!GO:0005761;mitochondrial ribosome;5.52406025822374e-11!GO:0000313;organellar ribosome;5.52406025822374e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.7834905434627e-11!GO:0009055;electron carrier activity;6.44585778004298e-11!GO:0006413;translational initiation;7.32988778852827e-11!GO:0048523;negative regulation of cellular process;1.12801516643616e-10!GO:0006446;regulation of translational initiation;1.58841024872246e-10!GO:0003712;transcription cofactor activity;4.77138058671016e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.48422592520889e-10!GO:0000375;RNA splicing, via transesterification reactions;7.48422592520889e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.48422592520889e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.8109486236746e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.1713243523937e-10!GO:0005635;nuclear envelope;1.19593998185784e-09!GO:0008565;protein transporter activity;1.27527311114019e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.27527311114019e-09!GO:0005768;endosome;1.39361450535852e-09!GO:0016604;nuclear body;1.81758667875739e-09!GO:0009259;ribonucleotide metabolic process;2.11599520903721e-09!GO:0006163;purine nucleotide metabolic process;2.31568894791008e-09!GO:0042254;ribosome biogenesis and assembly;2.41247036682718e-09!GO:0009150;purine ribonucleotide metabolic process;2.74097950671292e-09!GO:0005773;vacuole;2.96835707228439e-09!GO:0006259;DNA metabolic process;3.02648209474748e-09!GO:0005788;endoplasmic reticulum lumen;3.04565965804552e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.12256718165607e-09!GO:0031965;nuclear membrane;3.33865529146054e-09!GO:0048519;negative regulation of biological process;3.76631749680732e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.046955599735e-09!GO:0008639;small protein conjugating enzyme activity;4.05198478336043e-09!GO:0009056;catabolic process;4.35629671808679e-09!GO:0043069;negative regulation of programmed cell death;4.54897426129982e-09!GO:0043067;regulation of programmed cell death;4.83101821113923e-09!GO:0051188;cofactor biosynthetic process;4.94597959205116e-09!GO:0006913;nucleocytoplasmic transport;4.94597959205116e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.99451720950054e-09!GO:0006888;ER to Golgi vesicle-mediated transport;5.59036864037673e-09!GO:0006164;purine nucleotide biosynthetic process;6.12372123484681e-09!GO:0051169;nuclear transport;6.71547268020645e-09!GO:0009152;purine ribonucleotide biosynthetic process;6.77988082754056e-09!GO:0019787;small conjugating protein ligase activity;6.88754451625267e-09!GO:0004842;ubiquitin-protein ligase activity;7.636885368075e-09!GO:0042981;regulation of apoptosis;7.85549554380981e-09!GO:0015986;ATP synthesis coupled proton transport;8.19096474854017e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.19096474854017e-09!GO:0003924;GTPase activity;1.03032180431913e-08!GO:0051246;regulation of protein metabolic process;1.20580171023461e-08!GO:0043066;negative regulation of apoptosis;1.37039110708321e-08!GO:0016881;acid-amino acid ligase activity;1.44120239010366e-08!GO:0019829;cation-transporting ATPase activity;1.61241581543875e-08!GO:0009260;ribonucleotide biosynthetic process;1.99541411949458e-08!GO:0006399;tRNA metabolic process;2.10554072520202e-08!GO:0043687;post-translational protein modification;2.1059157141706e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.79137663829868e-08!GO:0016491;oxidoreductase activity;2.83665791039425e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.23691573885635e-08!GO:0006916;anti-apoptosis;3.4383239005892e-08!GO:0005524;ATP binding;3.47312699816996e-08!GO:0016607;nuclear speck;3.71829010948609e-08!GO:0030554;adenyl nucleotide binding;3.73440284680747e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.75522760577805e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.75522760577805e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.97977645018884e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.97977645018884e-08!GO:0017038;protein import;4.49997042595908e-08!GO:0009141;nucleoside triphosphate metabolic process;5.23050033820671e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.42587303481873e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.42587303481873e-08!GO:0044453;nuclear membrane part;5.72601365065213e-08!GO:0032559;adenyl ribonucleotide binding;5.72601365065213e-08!GO:0016887;ATPase activity;7.13777403128795e-08!GO:0009108;coenzyme biosynthetic process;8.30090812140095e-08!GO:0000323;lytic vacuole;8.7954928701289e-08!GO:0005764;lysosome;8.7954928701289e-08!GO:0046034;ATP metabolic process;1.25774404194483e-07!GO:0006754;ATP biosynthetic process;1.3107823966117e-07!GO:0006753;nucleoside phosphate metabolic process;1.3107823966117e-07!GO:0042623;ATPase activity, coupled;1.64941003273286e-07!GO:0050794;regulation of cellular process;1.78874682754565e-07!GO:0009060;aerobic respiration;2.42711959603147e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.50672803452321e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.50672803452321e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.50672803452321e-07!GO:0005770;late endosome;2.51101726896367e-07!GO:0044431;Golgi apparatus part;2.51761864892404e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.93036730824233e-07!GO:0043038;amino acid activation;3.53200190840272e-07!GO:0006418;tRNA aminoacylation for protein translation;3.53200190840272e-07!GO:0043039;tRNA aminoacylation;3.53200190840272e-07!GO:0016787;hydrolase activity;3.73554630292592e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.2713034439741e-07!GO:0031252;leading edge;5.29559694929535e-07!GO:0007005;mitochondrion organization and biogenesis;6.00252530754622e-07!GO:0006366;transcription from RNA polymerase II promoter;6.31138641674628e-07!GO:0009117;nucleotide metabolic process;6.6007329744866e-07!GO:0006461;protein complex assembly;6.8201723769799e-07!GO:0030120;vesicle coat;6.83530674515787e-07!GO:0030662;coated vesicle membrane;6.83530674515787e-07!GO:0048475;coated membrane;8.94973441936039e-07!GO:0030117;membrane coat;8.94973441936039e-07!GO:0004386;helicase activity;9.11993365073014e-07!GO:0045333;cellular respiration;1.12980451781085e-06!GO:0006752;group transfer coenzyme metabolic process;1.43428266109987e-06!GO:0004298;threonine endopeptidase activity;1.56111185759685e-06!GO:0044440;endosomal part;1.56851724217197e-06!GO:0010008;endosome membrane;1.56851724217197e-06!GO:0031988;membrane-bound vesicle;1.69136567119987e-06!GO:0008026;ATP-dependent helicase activity;1.85582719943986e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.00409216217397e-06!GO:0065002;intracellular protein transport across a membrane;2.02180292342513e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.20996922836839e-06!GO:0008654;phospholipid biosynthetic process;2.66544741147691e-06!GO:0051789;response to protein stimulus;2.89386260378671e-06!GO:0006986;response to unfolded protein;2.89386260378671e-06!GO:0003714;transcription corepressor activity;3.73349202933763e-06!GO:0005643;nuclear pore;5.26416856214763e-06!GO:0030532;small nuclear ribonucleoprotein complex;6.09656502495216e-06!GO:0007243;protein kinase cascade;6.56596373021918e-06!GO:0016564;transcription repressor activity;6.68309496942518e-06!GO:0006099;tricarboxylic acid cycle;7.07036509413607e-06!GO:0046356;acetyl-CoA catabolic process;7.07036509413607e-06!GO:0031982;vesicle;7.69868465545461e-06!GO:0005769;early endosome;8.0395691297907e-06!GO:0051187;cofactor catabolic process;8.4829886909106e-06!GO:0006974;response to DNA damage stimulus;8.92421960434879e-06!GO:0000139;Golgi membrane;9.90418766328194e-06!GO:0006091;generation of precursor metabolites and energy;1.1953165973867e-05!GO:0031410;cytoplasmic vesicle;1.1953165973867e-05!GO:0032446;protein modification by small protein conjugation;1.22696606649093e-05!GO:0006364;rRNA processing;1.25474854363557e-05!GO:0006613;cotranslational protein targeting to membrane;1.26465891349629e-05!GO:0009109;coenzyme catabolic process;1.44357680807148e-05!GO:0045454;cell redox homeostasis;1.48926896392566e-05!GO:0051170;nuclear import;1.4948277503517e-05!GO:0005525;GTP binding;1.50832502686748e-05!GO:0016072;rRNA metabolic process;1.56375155732506e-05!GO:0016567;protein ubiquitination;1.74674087468696e-05!GO:0045259;proton-transporting ATP synthase complex;1.960062031489e-05!GO:0006606;protein import into nucleus;2.05067803795291e-05!GO:0007049;cell cycle;2.06595452945222e-05!GO:0048522;positive regulation of cellular process;2.51620688298984e-05!GO:0006403;RNA localization;2.74932291373543e-05!GO:0050789;regulation of biological process;2.75699340869285e-05!GO:0050657;nucleic acid transport;2.7836576927254e-05!GO:0051236;establishment of RNA localization;2.7836576927254e-05!GO:0050658;RNA transport;2.7836576927254e-05!GO:0006084;acetyl-CoA metabolic process;2.87518222669182e-05!GO:0000245;spliceosome assembly;3.33824806961381e-05!GO:0005667;transcription factor complex;3.69233073427159e-05!GO:0046930;pore complex;3.85688320345387e-05!GO:0016853;isomerase activity;3.90455687919685e-05!GO:0031324;negative regulation of cellular metabolic process;3.93432728273874e-05!GO:0031968;organelle outer membrane;3.97428987621408e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.11178840476182e-05!GO:0033116;ER-Golgi intermediate compartment membrane;4.19967344068629e-05!GO:0008610;lipid biosynthetic process;4.29494273590222e-05!GO:0051726;regulation of cell cycle;4.44840075753638e-05!GO:0019867;outer membrane;4.60434816207213e-05!GO:0030867;rough endoplasmic reticulum membrane;4.68483011849471e-05!GO:0000074;regulation of progression through cell cycle;5.1129186511066e-05!GO:0005798;Golgi-associated vesicle;5.55327701390174e-05!GO:0016859;cis-trans isomerase activity;5.59544100396037e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.77676642456846e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.36819590331753e-05!GO:0045786;negative regulation of progression through cell cycle;7.46757090374978e-05!GO:0006793;phosphorus metabolic process;8.87434276253788e-05!GO:0006796;phosphate metabolic process;8.87434276253788e-05!GO:0043566;structure-specific DNA binding;9.19610970392588e-05!GO:0000151;ubiquitin ligase complex;0.000104445333375558!GO:0032561;guanyl ribonucleotide binding;0.000121600890426043!GO:0019001;guanyl nucleotide binding;0.000121600890426043!GO:0016740;transferase activity;0.000123677139845801!GO:0004576;oligosaccharyl transferase activity;0.000125329526554065!GO:0046474;glycerophospholipid biosynthetic process;0.000133057755132653!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000137063699824514!GO:0003724;RNA helicase activity;0.000139137404408608!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00015282669197702!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000177121561060695!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000207409358246331!GO:0009967;positive regulation of signal transduction;0.000211065665964589!GO:0006612;protein targeting to membrane;0.000211263244415081!GO:0016126;sterol biosynthetic process;0.000214258350059959!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00022612719925209!GO:0015399;primary active transmembrane transporter activity;0.00022612719925209!GO:0016310;phosphorylation;0.000228978642928656!GO:0005048;signal sequence binding;0.000233761311904353!GO:0008250;oligosaccharyl transferase complex;0.000236709739396155!GO:0003713;transcription coactivator activity;0.000241099979580537!GO:0005905;coated pit;0.000247409132558275!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000249377066833151!GO:0016563;transcription activator activity;0.000251505494143623!GO:0005741;mitochondrial outer membrane;0.000271753904769317!GO:0009165;nucleotide biosynthetic process;0.0002773522563354!GO:0009892;negative regulation of metabolic process;0.000286635774885889!GO:0006281;DNA repair;0.000290473546099783!GO:0006650;glycerophospholipid metabolic process;0.000303481305832948!GO:0003697;single-stranded DNA binding;0.000304589856587364!GO:0044262;cellular carbohydrate metabolic process;0.000318507619988539!GO:0031072;heat shock protein binding;0.000320976998595168!GO:0005791;rough endoplasmic reticulum;0.000323736785334932!GO:0005762;mitochondrial large ribosomal subunit;0.000337034717666034!GO:0000315;organellar large ribosomal subunit;0.000337034717666034!GO:0043021;ribonucleoprotein binding;0.000359816300572592!GO:0030176;integral to endoplasmic reticulum membrane;0.000365300060559036!GO:0016568;chromatin modification;0.000382397584078638!GO:0051028;mRNA transport;0.000388199327526909!GO:0016044;membrane organization and biogenesis;0.000415739278145215!GO:0006323;DNA packaging;0.000427580359996892!GO:0043623;cellular protein complex assembly;0.000437308144827014!GO:0019899;enzyme binding;0.000474408409050231!GO:0018196;peptidyl-asparagine modification;0.000525909475302904!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000525909475302904!GO:0016779;nucleotidyltransferase activity;0.000528077633410413!GO:0008361;regulation of cell size;0.00053527636774401!GO:0030133;transport vesicle;0.000608476863945543!GO:0009719;response to endogenous stimulus;0.000615735523889317!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00063020945772679!GO:0005885;Arp2/3 protein complex;0.000665253365788574!GO:0000314;organellar small ribosomal subunit;0.000731209776535597!GO:0005763;mitochondrial small ribosomal subunit;0.000731209776535597!GO:0046467;membrane lipid biosynthetic process;0.000735592439226439!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000763652774589286!GO:0051427;hormone receptor binding;0.000778522914201075!GO:0007040;lysosome organization and biogenesis;0.000799396930861409!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000885370581044882!GO:0019843;rRNA binding;0.000912607847538664!GO:0007033;vacuole organization and biogenesis;0.000961950101856188!GO:0016049;cell growth;0.000973293850469682!GO:0015980;energy derivation by oxidation of organic compounds;0.00110946288103513!GO:0046489;phosphoinositide biosynthetic process;0.00112883678686054!GO:0051920;peroxiredoxin activity;0.00123103368284622!GO:0043681;protein import into mitochondrion;0.00123807666428942!GO:0001726;ruffle;0.00124285632059963!GO:0030663;COPI coated vesicle membrane;0.0012715698516149!GO:0030126;COPI vesicle coat;0.0012715698516149!GO:0006950;response to stress;0.00136164250562888!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00143628026268664!GO:0005813;centrosome;0.00144326909886561!GO:0019752;carboxylic acid metabolic process;0.00144326909886561!GO:0035257;nuclear hormone receptor binding;0.00148814397432898!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00160678672260979!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00162434666687648!GO:0007006;mitochondrial membrane organization and biogenesis;0.00171636048635252!GO:0006082;organic acid metabolic process;0.00174116076455443!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00177891978560642!GO:0022402;cell cycle process;0.00186154395702125!GO:0005774;vacuolar membrane;0.00189233226560265!GO:0006643;membrane lipid metabolic process;0.00191261509911131!GO:0001558;regulation of cell growth;0.00193493896896958!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00196561081676358!GO:0016481;negative regulation of transcription;0.00200826534696399!GO:0006891;intra-Golgi vesicle-mediated transport;0.00207258042954219!GO:0008186;RNA-dependent ATPase activity;0.00214079507297363!GO:0051276;chromosome organization and biogenesis;0.00224870208553764!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00227481821102235!GO:0048518;positive regulation of biological process;0.00234676315320669!GO:0030036;actin cytoskeleton organization and biogenesis;0.00235370235535691!GO:0030433;ER-associated protein catabolic process;0.00235648164629291!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00235648164629291!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00244771777165574!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00244771777165574!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00244771777165574!GO:0006984;ER-nuclear signaling pathway;0.00252491074677329!GO:0003690;double-stranded DNA binding;0.00273485310680493!GO:0048468;cell development;0.00275528392232449!GO:0048500;signal recognition particle;0.00275823253492171!GO:0065007;biological regulation;0.00276377963178924!GO:0030384;phosphoinositide metabolic process;0.00306088864295607!GO:0030134;ER to Golgi transport vesicle;0.00307079630456905!GO:0030127;COPII vesicle coat;0.00311740474551689!GO:0012507;ER to Golgi transport vesicle membrane;0.00311740474551689!GO:0005815;microtubule organizing center;0.00314888759723288!GO:0019222;regulation of metabolic process;0.003184937706206!GO:0043492;ATPase activity, coupled to movement of substances;0.00319473711882042!GO:0006626;protein targeting to mitochondrion;0.00331323542357153!GO:0008632;apoptotic program;0.00333569319283431!GO:0000096;sulfur amino acid metabolic process;0.00333984672130094!GO:0006818;hydrogen transport;0.00354356844222543!GO:0051540;metal cluster binding;0.00360117414976432!GO:0051536;iron-sulfur cluster binding;0.00360117414976432!GO:0031902;late endosome membrane;0.00365342839205992!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00377479717919936!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00377479717919936!GO:0022890;inorganic cation transmembrane transporter activity;0.00386579821401138!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00388394773698069!GO:0004177;aminopeptidase activity;0.0038859129429745!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0038859129429745!GO:0046519;sphingoid metabolic process;0.00397600667721358!GO:0030137;COPI-coated vesicle;0.00400544066468152!GO:0015992;proton transport;0.00423182573479339!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00457642961094694!GO:0030503;regulation of cell redox homeostasis;0.00462578073394735!GO:0065009;regulation of a molecular function;0.00499456965068637!GO:0003899;DNA-directed RNA polymerase activity;0.0050044457668534!GO:0043284;biopolymer biosynthetic process;0.00500676083151788!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00501739505553899!GO:0006979;response to oxidative stress;0.00506403344101238!GO:0044437;vacuolar part;0.00506403344101238!GO:0007050;cell cycle arrest;0.00510093797892911!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00514935753806618!GO:0045045;secretory pathway;0.00539189814276386!GO:0030027;lamellipodium;0.00548473856831343!GO:0004004;ATP-dependent RNA helicase activity;0.00548473856831343!GO:0006672;ceramide metabolic process;0.00552559724905091!GO:0051168;nuclear export;0.00558262991174318!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00564387021793498!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00564399301070412!GO:0045047;protein targeting to ER;0.00564399301070412!GO:0030659;cytoplasmic vesicle membrane;0.00585105949800024!GO:0008139;nuclear localization sequence binding;0.0059449717722348!GO:0051087;chaperone binding;0.00641082465096739!GO:0006417;regulation of translation;0.00649014085901179!GO:0006383;transcription from RNA polymerase III promoter;0.00656918417928074!GO:0006644;phospholipid metabolic process;0.00674809224207196!GO:0005765;lysosomal membrane;0.0069328542469528!GO:0008383;manganese superoxide dismutase activity;0.00694006620198409!GO:0001315;age-dependent response to reactive oxygen species;0.00694006620198409!GO:0006414;translational elongation;0.00710621921550142!GO:0008637;apoptotic mitochondrial changes;0.00720299183482459!GO:0042802;identical protein binding;0.00728077425620854!GO:0003756;protein disulfide isomerase activity;0.00731927184880741!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00731927184880741!GO:0048487;beta-tubulin binding;0.00746725574576323!GO:0051101;regulation of DNA binding;0.00754152816929326!GO:0006740;NADPH regeneration;0.00754685509859876!GO:0006098;pentose-phosphate shunt;0.00754685509859876!GO:0016363;nuclear matrix;0.00765234207853002!GO:0008312;7S RNA binding;0.0076563797388614!GO:0016197;endosome transport;0.00778026034212667!GO:0006839;mitochondrial transport;0.00778443545471706!GO:0006260;DNA replication;0.00798909243610239!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00829058474729363!GO:0006695;cholesterol biosynthetic process;0.00831904102875796!GO:0008033;tRNA processing;0.00838705519149711!GO:0015630;microtubule cytoskeleton;0.00848701559948556!GO:0065004;protein-DNA complex assembly;0.00879782862248382!GO:0003729;mRNA binding;0.00921307884394227!GO:0032507;maintenance of cellular protein localization;0.00974137813747894!GO:0031901;early endosome membrane;0.00983870617935753!GO:0030658;transport vesicle membrane;0.010227142744814!GO:0006790;sulfur metabolic process;0.0104089313305816!GO:0016272;prefoldin complex;0.010461255831545!GO:0006892;post-Golgi vesicle-mediated transport;0.010472321298952!GO:0050811;GABA receptor binding;0.0105933878136533!GO:0000049;tRNA binding;0.0107672668236623!GO:0044255;cellular lipid metabolic process;0.0111670483064496!GO:0006509;membrane protein ectodomain proteolysis;0.0115712264747131!GO:0033619;membrane protein proteolysis;0.0115712264747131!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0117128313738807!GO:0030029;actin filament-based process;0.0117128313738807!GO:0007030;Golgi organization and biogenesis;0.0117936471224712!GO:0044433;cytoplasmic vesicle part;0.0122143626976039!GO:0050662;coenzyme binding;0.0122878763347375!GO:0030968;unfolded protein response;0.0124159123702165!GO:0005138;interleukin-6 receptor binding;0.0126770678877122!GO:0017166;vinculin binding;0.0127663669605377!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0130873017236587!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0133862992342308!GO:0006520;amino acid metabolic process;0.0134406498467808!GO:0030132;clathrin coat of coated pit;0.013484351270268!GO:0006497;protein amino acid lipidation;0.0139772310581816!GO:0006118;electron transport;0.0140567551431728!GO:0000059;protein import into nucleus, docking;0.014196609694254!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0150468253598003!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0150468253598003!GO:0032940;secretion by cell;0.0152511737070791!GO:0032984;macromolecular complex disassembly;0.0152564694541734!GO:0045185;maintenance of protein localization;0.0154754071187313!GO:0006506;GPI anchor biosynthetic process;0.0154783431504051!GO:0031418;L-ascorbic acid binding;0.0155103469836574!GO:0007034;vacuolar transport;0.0157535642578003!GO:0031543;peptidyl-proline dioxygenase activity;0.0157535642578003!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0160338475918966!GO:0003711;transcription elongation regulator activity;0.0161128307622747!GO:0046483;heterocycle metabolic process;0.0168348308073205!GO:0006767;water-soluble vitamin metabolic process;0.0177654611737688!GO:0012506;vesicle membrane;0.0179820858089019!GO:0043022;ribosome binding;0.0182464749136227!GO:0006595;polyamine metabolic process;0.0182464749136227!GO:0006505;GPI anchor metabolic process;0.0182664081525197!GO:0033559;unsaturated fatty acid metabolic process;0.0182932562792291!GO:0006636;unsaturated fatty acid biosynthetic process;0.0182932562792291!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0191731607946748!GO:0048471;perinuclear region of cytoplasm;0.0197870106308295!GO:0035258;steroid hormone receptor binding;0.019873751590125!GO:0051651;maintenance of cellular localization;0.020296496790134!GO:0006807;nitrogen compound metabolic process;0.0206013139453322!GO:0005869;dynactin complex;0.0206916815127384!GO:0030118;clathrin coat;0.0211843999556528!GO:0030041;actin filament polymerization;0.0212210365427095!GO:0006739;NADP metabolic process;0.0215069521219693!GO:0006518;peptide metabolic process;0.0217040969043768!GO:0006749;glutathione metabolic process;0.0217040969043768!GO:0006402;mRNA catabolic process;0.0225544800207192!GO:0006007;glucose catabolic process;0.0227881554764274!GO:0030880;RNA polymerase complex;0.0231959673740644!GO:0043241;protein complex disassembly;0.0235471722743898!GO:0044452;nucleolar part;0.023636802285008!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0239794165168032!GO:0003746;translation elongation factor activity;0.0239794165168032!GO:0030660;Golgi-associated vesicle membrane;0.0241956612595635!GO:0000339;RNA cap binding;0.0241956612595635!GO:0008234;cysteine-type peptidase activity;0.0241956612595635!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0242659300168385!GO:0051235;maintenance of localization;0.0250016853121614!GO:0005862;muscle thin filament tropomyosin;0.0255250038319844!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0255250038319844!GO:0015002;heme-copper terminal oxidase activity;0.0255250038319844!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0255250038319844!GO:0004129;cytochrome-c oxidase activity;0.0255250038319844!GO:0007264;small GTPase mediated signal transduction;0.0257570779707308!GO:0006769;nicotinamide metabolic process;0.0261841726101216!GO:0031326;regulation of cellular biosynthetic process;0.0262384577320785!GO:0005130;granulocyte colony-stimulating factor receptor binding;0.0262384577320785!GO:0048144;fibroblast proliferation;0.0263110194243465!GO:0048145;regulation of fibroblast proliferation;0.0263110194243465!GO:0009889;regulation of biosynthetic process;0.0267779850874718!GO:0030521;androgen receptor signaling pathway;0.0268489803052844!GO:0019798;procollagen-proline dioxygenase activity;0.0268544236625469!GO:0040008;regulation of growth;0.0269850128884647!GO:0006354;RNA elongation;0.0271438500346531!GO:0006352;transcription initiation;0.0275181060386794!GO:0008047;enzyme activator activity;0.0283568876308794!GO:0006333;chromatin assembly or disassembly;0.0284989520978858!GO:0051287;NAD binding;0.0284989520978858!GO:0000209;protein polyubiquitination;0.0287356891546955!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0289010470542177!GO:0005832;chaperonin-containing T-complex;0.0301535731745886!GO:0006607;NLS-bearing substrate import into nucleus;0.0301535731745886!GO:0016860;intramolecular oxidoreductase activity;0.0305834236678239!GO:0008320;protein transmembrane transporter activity;0.0307580689827154!GO:0031625;ubiquitin protein ligase binding;0.0309804009385065!GO:0001666;response to hypoxia;0.0310873207098495!GO:0006733;oxidoreduction coenzyme metabolic process;0.0313612703128885!GO:0022884;macromolecule transmembrane transporter activity;0.0316906364960379!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0316906364960379!GO:0005684;U2-dependent spliceosome;0.0322709614825813!GO:0042158;lipoprotein biosynthetic process;0.0327559972520254!GO:0004287;prolyl oligopeptidase activity;0.0332449327801856!GO:0031529;ruffle organization and biogenesis;0.0332668141207788!GO:0051272;positive regulation of cell motility;0.0333908555710975!GO:0040017;positive regulation of locomotion;0.0333908555710975!GO:0048146;positive regulation of fibroblast proliferation;0.0333933407355869!GO:0045941;positive regulation of transcription;0.0334688434440141!GO:0006611;protein export from nucleus;0.0337699705299177!GO:0004656;procollagen-proline 4-dioxygenase activity;0.034150291057262!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.034150291057262!GO:0006467;protein thiol-disulfide exchange;0.03480423047017!GO:0008180;signalosome;0.0348368087201061!GO:0000287;magnesium ion binding;0.0348712072797388!GO:0016125;sterol metabolic process;0.0354561621185852!GO:0051881;regulation of mitochondrial membrane potential;0.0358494640095277!GO:0004228;gelatinase A activity;0.0358494640095277!GO:0001955;blood vessel maturation;0.0358494640095277!GO:0035035;histone acetyltransferase binding;0.036146712579933!GO:0051270;regulation of cell motility;0.037038060705356!GO:0045893;positive regulation of transcription, DNA-dependent;0.037038060705356!GO:0030032;lamellipodium biogenesis;0.0377954329326941!GO:0009308;amine metabolic process;0.0383316915199358!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0398000586128135!GO:0000428;DNA-directed RNA polymerase complex;0.0398000586128135!GO:0043065;positive regulation of apoptosis;0.0400867180477165!GO:0008652;amino acid biosynthetic process;0.0405161391565389!GO:0015923;mannosidase activity;0.041330192633484!GO:0001872;zymosan binding;0.0413740180076319!GO:0001878;response to yeast;0.0413740180076319!GO:0051252;regulation of RNA metabolic process;0.0416434373666317!GO:0000785;chromatin;0.0416459184062564!GO:0022411;cellular component disassembly;0.0418358843360331!GO:0006897;endocytosis;0.0422223187108529!GO:0010324;membrane invagination;0.0422223187108529!GO:0043624;cellular protein complex disassembly;0.0426731839778568!GO:0006508;proteolysis;0.0429623513623907!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0430157886895617!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0435702242775285!GO:0010257;NADH dehydrogenase complex assembly;0.0435702242775285!GO:0033108;mitochondrial respiratory chain complex assembly;0.0435702242775285!GO:0043068;positive regulation of programmed cell death;0.0446838526157245!GO:0000097;sulfur amino acid biosynthetic process;0.044769461582869!GO:0030162;regulation of proteolysis;0.0451274222054121!GO:0015631;tubulin binding;0.0453046778241418!GO:0031301;integral to organelle membrane;0.0454116187190867!GO:0008243;plasminogen activator activity;0.0463655679977322!GO:0051539;4 iron, 4 sulfur cluster binding;0.0463655679977322!GO:0030508;thiol-disulfide exchange intermediate activity;0.0483134146427898!GO:0045892;negative regulation of transcription, DNA-dependent;0.0495733906636158!GO:0006458;'de novo' protein folding;0.0495733906636158!GO:0051084;'de novo' posttranslational protein folding;0.0495733906636158 | |||
|sample_id=11833 | |sample_id=11833 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=ovary | |sample_tissue=ovary | ||
|top_motifs=NKX3-1:2.37923067716;HIF1A:2.0103672416;ALX1:1.66009434944;ATF6:1.60454422932;TAL1_TCF{3,4,12}:1.50161284737;PAX4:1.31053595838;XBP1:1.25346206361;ONECUT1,2:1.21019855362;RXR{A,B,G}:1.20463867668;bHLH_family:1.18659901435;SREBF1,2:1.18366718257;ZBTB16:1.16336611612;ALX4:1.14239014489;NFIX:1.08410916273;HOX{A4,D4}:1.0542159632;EVI1:1.02462311188;NR6A1:0.93160815563;NFE2L1:0.924950741642;EN1,2:0.893521239991;POU6F1:0.880152666064;HSF1,2:0.859942103132;NFE2L2:0.808007103951;PPARG:0.803219798487;MAFB:0.788865150534;TLX2:0.745224878499;GZF1:0.723659437899;HLF:0.692756437896;HES1:0.64051583139;MYBL2:0.633051683071;NKX2-2,8:0.611953736814;BPTF:0.574240849239;RXRA_VDR{dimer}:0.563300278056;ZNF238:0.560598728094;PAX1,9:0.550702088105;IRF1,2:0.533274951307;LHX3,4:0.522465521986;ZBTB6:0.502592158044;HBP1_HMGB_SSRP1_UBTF:0.457595847403;NFATC1..3:0.450892726035;ELK1,4_GABP{A,B1}:0.43520247354;PRRX1,2:0.432658089945;CDC5L:0.428959155865;MYFfamily:0.414631233225;UFEwm:0.396956942725;PAX2:0.368845191593;TFAP4:0.363265841222;GTF2A1,2:0.361744428746;TLX1..3_NFIC{dimer}:0.357167458416;HMX1:0.35634869728;FOXD3:0.344786159347;PRDM1:0.326542578278;TBX4,5:0.3255735114;NFE2:0.305332142157;TP53:0.297323324983;CEBPA,B_DDIT3:0.287296195487;NFKB1_REL_RELA:0.274339618816;TEAD1:0.270599772027;TBP:0.234032413124;EBF1:0.224082676602;NHLH1,2:0.206591894058;BACH2:0.203044172737;FOS_FOS{B,L1}_JUN{B,D}:0.200720959991;CRX:0.196260423267;ZNF384:0.180145923442;FOXP3:0.179655066337;KLF4:0.175664125882;ESR1:0.173407414277;SMAD1..7,9:0.157047465305;MAZ:0.156145475844;STAT2,4,6:0.150530931857;PITX1..3:0.149997545903;CREB1:0.149988119982;FOXP1:0.138869389488;HOX{A5,B5}:0.130657910531;GLI1..3:0.123463425008;RFX1:0.118466689158;ZNF423:0.105892574769;PATZ1:0.100537398404;STAT5{A,B}:0.0981720080385;RREB1:0.0968542681854;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0827520859216;SOX17:0.0792100776125;MZF1:0.0705328463898;FOSL2:0.0682421581134;NKX2-1,4:0.0614657016522;TEF:0.0518295644222;TFAP2{A,C}:0.0470370512883;SRF:0.0460390676271;GTF2I:0.0445612319071;IKZF1:0.0401571875193;FOX{D1,D2}:0.0287964156184;AIRE:0.0221785733511;TOPORS:0.0205626385332;TFAP2B:0.0196909056996;MED-1{core}:0.0110335597885;RUNX1..3:0.00443910568536;ZIC1..3:0.00315981784663;ATF2:-0.00816689864037;HNF1A:-0.0137375973667;CDX1,2,4:-0.0165743810091;AHR_ARNT_ARNT2:-0.0172647900622;GFI1B:-0.0272289679218;ZFP161:-0.0315320607038;TFCP2:-0.0326081412873;NKX3-2:-0.0859250965491;ZNF143:-0.108154394957;MTE{core}:-0.108553217991;NR3C1:-0.111865167825;PAX8:-0.114216933773;FOXL1:-0.116230772556;SP1:-0.134547622931;SPZ1:-0.13653194669;ELF1,2,4:-0.137255945407;NKX6-1,2:-0.142724904985;NANOG{mouse}:-0.150071810442;TFDP1:-0.151007984441;PBX1:-0.156976236319;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.158534498094;REST:-0.158759890033;MTF1:-0.17942560299;IRF7:-0.18217916629;HIC1:-0.184598260636;ESRRA:-0.190426620531;GCM1,2:-0.196977282348;HMGA1,2:-0.215119675116;HNF4A_NR2F1,2:-0.234916919747;HOXA9_MEIS1:-0.243112179214;DMAP1_NCOR{1,2}_SMARC:-0.249392887565;JUN:-0.262552394567;STAT1,3:-0.267065417568;GATA4:-0.27611560351;SPI1:-0.28252640121;SOX5:-0.300617270389;ATF4:-0.311487792171;NR1H4:-0.31259413966;FOXQ1:-0.31943836506;LEF1_TCF7_TCF7L1,2:-0.320771001125;PAX5:-0.322518840864;NRF1:-0.324521673393;ATF5_CREB3:-0.334124008766;RBPJ:-0.336696407034;ADNP_IRX_SIX_ZHX:-0.382476789137;POU3F1..4:-0.384763234909;PDX1:-0.385759421901;POU2F1..3:-0.390310088854;CUX2:-0.396882128568;PAX3,7:-0.396955881085;YY1:-0.414468847176;MEF2{A,B,C,D}:-0.431600292335;ETS1,2:-0.433709727546;IKZF2:-0.456836183509;XCPE1{core}:-0.480016903072;RFX2..5_RFXANK_RFXAP:-0.497962700845;DBP:-0.506132162862;T:-0.515424499442;RORA:-0.515424524328;ZNF148:-0.517910508227;FOX{F1,F2,J1}:-0.521585459728;EGR1..3:-0.564557383531;AR:-0.584193363888;GATA6:-0.597918734962;FOX{I1,J2}:-0.621675008758;HAND1,2:-0.629131930545;SPIB:-0.642464465893;POU1F1:-0.643745597979;MYOD1:-0.666387309404;NFIL3:-0.682253399703;MYB:-0.695002788918;FOXN1:-0.695269706845;LMO2:-0.701742445984;GFI1:-0.779511044488;ZEB1:-0.806667258381;FOXO1,3,4:-0.825679973857;OCT4_SOX2{dimer}:-0.845703575989;SOX{8,9,10}:-0.88439734861;E2F1..5:-0.931720791571;NANOG:-0.94220123854;TGIF1:-0.975667925221;SOX2:-0.977347970116;SNAI1..3:-0.985653525283;NFY{A,B,C}:-1.00735808149;FOXM1:-1.01473216688;EP300:-1.03747307709;NKX2-3_NKX2-5:-1.06326576971;PAX6:-1.07293115988;BREu{core}:-1.11079124807;HOX{A6,A7,B6,B7}:-1.11204014722;POU5F1:-1.19071004464;FOXA2:-1.29862531619;NR5A1,2:-1.33811585325;ARID5B:-1.38992542914;VSX1,2:-1.56580623193 | |top_motifs=NKX3-1:2.37923067716;HIF1A:2.0103672416;ALX1:1.66009434944;ATF6:1.60454422932;TAL1_TCF{3,4,12}:1.50161284737;PAX4:1.31053595838;XBP1:1.25346206361;ONECUT1,2:1.21019855362;RXR{A,B,G}:1.20463867668;bHLH_family:1.18659901435;SREBF1,2:1.18366718257;ZBTB16:1.16336611612;ALX4:1.14239014489;NFIX:1.08410916273;HOX{A4,D4}:1.0542159632;EVI1:1.02462311188;NR6A1:0.93160815563;NFE2L1:0.924950741642;EN1,2:0.893521239991;POU6F1:0.880152666064;HSF1,2:0.859942103132;NFE2L2:0.808007103951;PPARG:0.803219798487;MAFB:0.788865150534;TLX2:0.745224878499;GZF1:0.723659437899;HLF:0.692756437896;HES1:0.64051583139;MYBL2:0.633051683071;NKX2-2,8:0.611953736814;BPTF:0.574240849239;RXRA_VDR{dimer}:0.563300278056;ZNF238:0.560598728094;PAX1,9:0.550702088105;IRF1,2:0.533274951307;LHX3,4:0.522465521986;ZBTB6:0.502592158044;HBP1_HMGB_SSRP1_UBTF:0.457595847403;NFATC1..3:0.450892726035;ELK1,4_GABP{A,B1}:0.43520247354;PRRX1,2:0.432658089945;CDC5L:0.428959155865;MYFfamily:0.414631233225;UFEwm:0.396956942725;PAX2:0.368845191593;TFAP4:0.363265841222;GTF2A1,2:0.361744428746;TLX1..3_NFIC{dimer}:0.357167458416;HMX1:0.35634869728;FOXD3:0.344786159347;PRDM1:0.326542578278;TBX4,5:0.3255735114;NFE2:0.305332142157;TP53:0.297323324983;CEBPA,B_DDIT3:0.287296195487;NFKB1_REL_RELA:0.274339618816;TEAD1:0.270599772027;TBP:0.234032413124;EBF1:0.224082676602;NHLH1,2:0.206591894058;BACH2:0.203044172737;FOS_FOS{B,L1}_JUN{B,D}:0.200720959991;CRX:0.196260423267;ZNF384:0.180145923442;FOXP3:0.179655066337;KLF4:0.175664125882;ESR1:0.173407414277;SMAD1..7,9:0.157047465305;MAZ:0.156145475844;STAT2,4,6:0.150530931857;PITX1..3:0.149997545903;CREB1:0.149988119982;FOXP1:0.138869389488;HOX{A5,B5}:0.130657910531;GLI1..3:0.123463425008;RFX1:0.118466689158;ZNF423:0.105892574769;PATZ1:0.100537398404;STAT5{A,B}:0.0981720080385;RREB1:0.0968542681854;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0827520859216;SOX17:0.0792100776125;MZF1:0.0705328463898;FOSL2:0.0682421581134;NKX2-1,4:0.0614657016522;TEF:0.0518295644222;TFAP2{A,C}:0.0470370512883;SRF:0.0460390676271;GTF2I:0.0445612319071;IKZF1:0.0401571875193;FOX{D1,D2}:0.0287964156184;AIRE:0.0221785733511;TOPORS:0.0205626385332;TFAP2B:0.0196909056996;MED-1{core}:0.0110335597885;RUNX1..3:0.00443910568536;ZIC1..3:0.00315981784663;ATF2:-0.00816689864037;HNF1A:-0.0137375973667;CDX1,2,4:-0.0165743810091;AHR_ARNT_ARNT2:-0.0172647900622;GFI1B:-0.0272289679218;ZFP161:-0.0315320607038;TFCP2:-0.0326081412873;NKX3-2:-0.0859250965491;ZNF143:-0.108154394957;MTE{core}:-0.108553217991;NR3C1:-0.111865167825;PAX8:-0.114216933773;FOXL1:-0.116230772556;SP1:-0.134547622931;SPZ1:-0.13653194669;ELF1,2,4:-0.137255945407;NKX6-1,2:-0.142724904985;NANOG{mouse}:-0.150071810442;TFDP1:-0.151007984441;PBX1:-0.156976236319;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.158534498094;REST:-0.158759890033;MTF1:-0.17942560299;IRF7:-0.18217916629;HIC1:-0.184598260636;ESRRA:-0.190426620531;GCM1,2:-0.196977282348;HMGA1,2:-0.215119675116;HNF4A_NR2F1,2:-0.234916919747;HOXA9_MEIS1:-0.243112179214;DMAP1_NCOR{1,2}_SMARC:-0.249392887565;JUN:-0.262552394567;STAT1,3:-0.267065417568;GATA4:-0.27611560351;SPI1:-0.28252640121;SOX5:-0.300617270389;ATF4:-0.311487792171;NR1H4:-0.31259413966;FOXQ1:-0.31943836506;LEF1_TCF7_TCF7L1,2:-0.320771001125;PAX5:-0.322518840864;NRF1:-0.324521673393;ATF5_CREB3:-0.334124008766;RBPJ:-0.336696407034;ADNP_IRX_SIX_ZHX:-0.382476789137;POU3F1..4:-0.384763234909;PDX1:-0.385759421901;POU2F1..3:-0.390310088854;CUX2:-0.396882128568;PAX3,7:-0.396955881085;YY1:-0.414468847176;MEF2{A,B,C,D}:-0.431600292335;ETS1,2:-0.433709727546;IKZF2:-0.456836183509;XCPE1{core}:-0.480016903072;RFX2..5_RFXANK_RFXAP:-0.497962700845;DBP:-0.506132162862;T:-0.515424499442;RORA:-0.515424524328;ZNF148:-0.517910508227;FOX{F1,F2,J1}:-0.521585459728;EGR1..3:-0.564557383531;AR:-0.584193363888;GATA6:-0.597918734962;FOX{I1,J2}:-0.621675008758;HAND1,2:-0.629131930545;SPIB:-0.642464465893;POU1F1:-0.643745597979;MYOD1:-0.666387309404;NFIL3:-0.682253399703;MYB:-0.695002788918;FOXN1:-0.695269706845;LMO2:-0.701742445984;GFI1:-0.779511044488;ZEB1:-0.806667258381;FOXO1,3,4:-0.825679973857;OCT4_SOX2{dimer}:-0.845703575989;SOX{8,9,10}:-0.88439734861;E2F1..5:-0.931720791571;NANOG:-0.94220123854;TGIF1:-0.975667925221;SOX2:-0.977347970116;SNAI1..3:-0.985653525283;NFY{A,B,C}:-1.00735808149;FOXM1:-1.01473216688;EP300:-1.03747307709;NKX2-3_NKX2-5:-1.06326576971;PAX6:-1.07293115988;BREu{core}:-1.11079124807;HOX{A6,A7,B6,B7}:-1.11204014722;POU5F1:-1.19071004464;FOXA2:-1.29862531619;NR5A1,2:-1.33811585325;ARID5B:-1.38992542914;VSX1,2:-1.56580623193 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11833-124G6;search_select_hide=table117:FF:11833-124G6 | |||
}} | }} | ||
Latest revision as of 18:22, 4 June 2020
| Name: | mesenchymal precursor cell - ovarian cancer left ovary, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13092 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13092
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13092
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.761 |
| 10 | 10 | 0.0769 |
| 100 | 100 | 0.153 |
| 101 | 101 | 0.446 |
| 102 | 102 | 0.227 |
| 103 | 103 | 0.63 |
| 104 | 104 | 0.528 |
| 105 | 105 | 0.0264 |
| 106 | 106 | 0.0415 |
| 107 | 107 | 0.276 |
| 108 | 108 | 0.452 |
| 109 | 109 | 0.346 |
| 11 | 11 | 0.743 |
| 110 | 110 | 0.552 |
| 111 | 111 | 0.168 |
| 112 | 112 | 0.726 |
| 113 | 113 | 0.502 |
| 114 | 114 | 0.0659 |
| 115 | 115 | 0.758 |
| 116 | 116 | 0.139 |
| 117 | 117 | 0.0594 |
| 118 | 118 | 0.326 |
| 119 | 119 | 0.773 |
| 12 | 12 | 0.752 |
| 120 | 120 | 0.295 |
| 121 | 121 | 0.507 |
| 122 | 122 | 0.0175 |
| 123 | 123 | 0.651 |
| 124 | 124 | 0.0729 |
| 125 | 125 | 0.851 |
| 126 | 126 | 0.697 |
| 127 | 127 | 0.45 |
| 128 | 128 | 0.583 |
| 129 | 129 | 0.988 |
| 13 | 13 | 0.359 |
| 130 | 130 | 0.301 |
| 131 | 131 | 0.224 |
| 132 | 132 | 0.775 |
| 133 | 133 | 0.825 |
| 134 | 134 | 0.964 |
| 135 | 135 | 0.827 |
| 136 | 136 | 0.909 |
| 137 | 137 | 0.805 |
| 138 | 138 | 0.231 |
| 139 | 139 | 0.29 |
| 14 | 14 | 0.333 |
| 140 | 140 | 0.559 |
| 141 | 141 | 0.667 |
| 142 | 142 | 0.361 |
| 143 | 143 | 0.285 |
| 144 | 144 | 0.202 |
| 145 | 145 | 0.174 |
| 146 | 146 | 0.204 |
| 147 | 147 | 0.566 |
| 148 | 148 | 0.525 |
| 149 | 149 | 0.393 |
| 15 | 15 | 0.214 |
| 150 | 150 | 0.146 |
| 151 | 151 | 0.754 |
| 152 | 152 | 0.144 |
| 153 | 153 | 0.648 |
| 154 | 154 | 0.83 |
| 155 | 155 | 0.03 |
| 156 | 156 | 0.13 |
| 157 | 157 | 0.25 |
| 158 | 158 | 0.445 |
| 159 | 159 | 0.786 |
| 16 | 16 | 0.154 |
| 160 | 160 | 0.68 |
| 161 | 161 | 0.22 |
| 162 | 162 | 0.607 |
| 163 | 163 | 0.682 |
| 164 | 164 | 4.71072e-4 |
| 165 | 165 | 0.74 |
| 166 | 166 | 0.22 |
| 167 | 167 | 0.0476 |
| 168 | 168 | 0.2 |
| 169 | 169 | 0.356 |
| 17 | 17 | 0.923 |
| 18 | 18 | 0.0339 |
| 19 | 19 | 0.359 |
| 2 | 2 | 0.89 |
| 20 | 20 | 0.386 |
| 21 | 21 | 0.0858 |
| 22 | 22 | 0.554 |
| 23 | 23 | 0.381 |
| 24 | 24 | 0.995 |
| 25 | 25 | 0.0149 |
| 26 | 26 | 0.519 |
| 27 | 27 | 0.908 |
| 28 | 28 | 0.724 |
| 29 | 29 | 0.103 |
| 3 | 3 | 0.669 |
| 30 | 30 | 0.149 |
| 31 | 31 | 0.792 |
| 32 | 32 | 4.21802e-5 |
| 33 | 33 | 0.968 |
| 34 | 34 | 0.644 |
| 35 | 35 | 0.195 |
| 36 | 36 | 0.441 |
| 37 | 37 | 0.00439 |
| 38 | 38 | 0.257 |
| 39 | 39 | 0.464 |
| 4 | 4 | 0.0659 |
| 40 | 40 | 0.417 |
| 41 | 41 | 0.269 |
| 42 | 42 | 0.138 |
| 43 | 43 | 0.533 |
| 44 | 44 | 0.928 |
| 45 | 45 | 0.747 |
| 46 | 46 | 0.699 |
| 47 | 47 | 0.424 |
| 48 | 48 | 0.905 |
| 49 | 49 | 0.302 |
| 5 | 5 | 0.672 |
| 50 | 50 | 0.335 |
| 51 | 51 | 0.466 |
| 52 | 52 | 0.912 |
| 53 | 53 | 0.347 |
| 54 | 54 | 0.892 |
| 55 | 55 | 0.0672 |
| 56 | 56 | 0.881 |
| 57 | 57 | 0.886 |
| 58 | 58 | 0.143 |
| 59 | 59 | 0.37 |
| 6 | 6 | 0.0925 |
| 60 | 60 | 0.671 |
| 61 | 61 | 0.639 |
| 62 | 62 | 0.111 |
| 63 | 63 | 0.227 |
| 64 | 64 | 0.68 |
| 65 | 65 | 0.58 |
| 66 | 66 | 0.0425 |
| 67 | 67 | 0.499 |
| 68 | 68 | 0.906 |
| 69 | 69 | 0.203 |
| 7 | 7 | 0.0993 |
| 70 | 70 | 0.261 |
| 71 | 71 | 0.0799 |
| 72 | 72 | 0.613 |
| 73 | 73 | 0.0135 |
| 74 | 74 | 0.00267 |
| 75 | 75 | 0.159 |
| 76 | 76 | 0.0285 |
| 77 | 77 | 0.213 |
| 78 | 78 | 0.0895 |
| 79 | 79 | 0.0423 |
| 8 | 8 | 0.854 |
| 80 | 80 | 0.0368 |
| 81 | 81 | 0.774 |
| 82 | 82 | 0.407 |
| 83 | 83 | 0.221 |
| 84 | 84 | 0.502 |
| 85 | 85 | 0.0937 |
| 86 | 86 | 0.632 |
| 87 | 87 | 0.519 |
| 88 | 88 | 0.924 |
| 89 | 89 | 0.489 |
| 9 | 9 | 0.694 |
| 90 | 90 | 0.104 |
| 91 | 91 | 0.585 |
| 92 | 92 | 0.175 |
| 93 | 93 | 0.815 |
| 94 | 94 | 0.83 |
| 95 | 95 | 0.824 |
| 96 | 96 | 0.141 |
| 97 | 97 | 0.29 |
| 98 | 98 | 0.105 |
| 99 | 99 | 0.433 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13092
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000273 human mesenchymal precursor cell- ovarian cancer-left ovary sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002119 (left ovary)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000273 (human mesenchymal precursor cell- ovarian cancer-left ovary sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
