FF:11913-125G5: Difference between revisions

Latest revision as of 18:29, 4 June 2020

Name:	CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13813
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	53-54
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005773

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13813		CAGE		DRX008188		DRR009060

Accession ID Hg19

Library id		BAM		CTSS
CNhs13813		DRZ000485		DRZ001870

Accession ID Hg38

Library id		BAM		CTSS
CNhs13813		DRZ011835		DRZ013220

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.0661
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0235
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.322
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.123
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0661
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0661
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0.0661
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.174
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0601
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.281
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.125
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.716
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0709
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.061
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0661
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.187
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.0661
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.797
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.878
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.546
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.449
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.282
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.51
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.365
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0661
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0612
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.306
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.154
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.144
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.995
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.85
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13813

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.91686e-5
MA0003.1	MA0003.1	0.79
MA0004.1	MA0004.1	0.742
MA0006.1	MA0006.1	0.515
MA0007.1	MA0007.1	0.951
MA0009.1	MA0009.1	0.488
MA0014.1	MA0014.1	0.896
MA0017.1	MA0017.1	0.29
MA0018.2	MA0018.2	0.445
MA0019.1	MA0019.1	0.0568
MA0024.1	MA0024.1	0.0591
MA0025.1	MA0025.1	0.0779
MA0027.1	MA0027.1	0.408
MA0028.1	MA0028.1	6.95e-4
MA0029.1	MA0029.1	0.415
MA0030.1	MA0030.1	0.126
MA0031.1	MA0031.1	0.965
MA0035.2	MA0035.2	0.315
MA0038.1	MA0038.1	0.0712
MA0039.2	MA0039.2	0.489
MA0040.1	MA0040.1	0.177
MA0041.1	MA0041.1	0.204
MA0042.1	MA0042.1	0.41
MA0043.1	MA0043.1	0.0423
MA0046.1	MA0046.1	0.0366
MA0047.2	MA0047.2	0.825
MA0048.1	MA0048.1	0.608
MA0050.1	MA0050.1	6.58875e-7
MA0051.1	MA0051.1	0.0137
MA0052.1	MA0052.1	0.0109
MA0055.1	MA0055.1	0.626
MA0057.1	MA0057.1	0.78
MA0058.1	MA0058.1	0.842
MA0059.1	MA0059.1	0.48
MA0060.1	MA0060.1	0.722
MA0061.1	MA0061.1	0.0911
MA0062.2	MA0062.2	1.4193e-9
MA0065.2	MA0065.2	0.0697
MA0066.1	MA0066.1	0.379
MA0067.1	MA0067.1	0.879
MA0068.1	MA0068.1	0.618
MA0069.1	MA0069.1	0.893
MA0070.1	MA0070.1	0.582
MA0071.1	MA0071.1	0.558
MA0072.1	MA0072.1	0.865
MA0073.1	MA0073.1	0.845
MA0074.1	MA0074.1	0.738
MA0076.1	MA0076.1	1.19712e-4
MA0077.1	MA0077.1	0.0652
MA0078.1	MA0078.1	0.933
MA0079.2	MA0079.2	0.291
MA0080.2	MA0080.2	8.23117e-9
MA0081.1	MA0081.1	0.0874
MA0083.1	MA0083.1	0.0545
MA0084.1	MA0084.1	0.877
MA0087.1	MA0087.1	0.385
MA0088.1	MA0088.1	0.0508
MA0090.1	MA0090.1	0.00169
MA0091.1	MA0091.1	0.928
MA0092.1	MA0092.1	0.838
MA0093.1	MA0093.1	0.665
MA0099.2	MA0099.2	7.40104e-6
MA0100.1	MA0100.1	0.708
MA0101.1	MA0101.1	0.617
MA0102.2	MA0102.2	0.173
MA0103.1	MA0103.1	0.0713
MA0104.2	MA0104.2	0.276
MA0105.1	MA0105.1	2.20974e-5
MA0106.1	MA0106.1	0.941
MA0107.1	MA0107.1	0.278
MA0108.2	MA0108.2	3.27146e-10
MA0111.1	MA0111.1	0.054
MA0112.2	MA0112.2	0.12
MA0113.1	MA0113.1	0.956
MA0114.1	MA0114.1	0.25
MA0115.1	MA0115.1	0.536
MA0116.1	MA0116.1	3.39379e-5
MA0117.1	MA0117.1	0.993
MA0119.1	MA0119.1	0.853
MA0122.1	MA0122.1	0.825
MA0124.1	MA0124.1	0.428
MA0125.1	MA0125.1	0.399
MA0131.1	MA0131.1	0.201
MA0135.1	MA0135.1	0.0208
MA0136.1	MA0136.1	2.27431e-14
MA0137.2	MA0137.2	0.696
MA0138.2	MA0138.2	0.294
MA0139.1	MA0139.1	0.0281
MA0140.1	MA0140.1	0.577
MA0141.1	MA0141.1	0.564
MA0142.1	MA0142.1	0.276
MA0143.1	MA0143.1	0.112
MA0144.1	MA0144.1	0.965
MA0145.1	MA0145.1	0.512
MA0146.1	MA0146.1	0.104
MA0147.1	MA0147.1	0.23
MA0148.1	MA0148.1	0.58
MA0149.1	MA0149.1	0.0443
MA0150.1	MA0150.1	0.164
MA0152.1	MA0152.1	0.0462
MA0153.1	MA0153.1	0.0946
MA0154.1	MA0154.1	0.0362
MA0155.1	MA0155.1	0.551
MA0156.1	MA0156.1	1.48867e-10
MA0157.1	MA0157.1	0.563
MA0159.1	MA0159.1	0.462
MA0160.1	MA0160.1	0.67
MA0162.1	MA0162.1	0.873
MA0163.1	MA0163.1	3.19359e-12
MA0164.1	MA0164.1	0.985
MA0258.1	MA0258.1	0.0195
MA0259.1	MA0259.1	0.497

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13813

Novel motif	Logo	P-value
1	1	0.0707
10	10	0.00359
100	100	0.423
101	101	0.0518
102	102	0.571
103	103	0.775
104	104	0.741
105	105	0.409
106	106	0.299
107	107	0.725
108	108	0.886
109	109	0.12
11	11	0.0323
110	110	0.336
111	111	0.222
112	112	0.274
113	113	0.29
114	114	0.413
115	115	0.155
116	116	0.342
117	117	0.0031
118	118	0.41
119	119	0.277
12	12	0.721
120	120	0.749
121	121	0.781
122	122	0.863
123	123	2.38734e-7
124	124	0.156
125	125	0.834
126	126	0.793
127	127	0.719
128	128	0.525
129	129	0.381
13	13	0.328
130	130	0.569
131	131	0.634
132	132	0.48
133	133	0.459
134	134	0.51
135	135	0.639
136	136	0.827
137	137	0.355
138	138	0.192
139	139	0.267
14	14	0.473
140	140	0.046
141	141	0.472
142	142	0.62
143	143	0.0133
144	144	0.362
145	145	0.106
146	146	0.831
147	147	0.187
148	148	0.059
149	149	0.884
15	15	0.233
150	150	0.487
151	151	0.582
152	152	0.175
153	153	0.991
154	154	0.389
155	155	0.0646
156	156	0.746
157	157	0.299
158	158	0.187
159	159	0.957
16	16	0.651
160	160	0.3
161	161	0.0627
162	162	0.503
163	163	0.241
164	164	0.0988
165	165	0.622
166	166	0.913
167	167	0.134
168	168	0.734
169	169	0.251
17	17	0.796
18	18	0.995
19	19	0.794
2	2	0.922
20	20	0.556
21	21	0.143
22	22	0.8
23	23	0.755
24	24	0.939
25	25	0.185
26	26	0.0342
27	27	0.324
28	28	0.661
29	29	0.0288
3	3	0.0342
30	30	0.0806
31	31	0.96
32	32	0.537
33	33	0.648
34	34	0.98
35	35	0.22
36	36	0.0229
37	37	0.309
38	38	0.537
39	39	0.597
4	4	0.945
40	40	0.348
41	41	0.878
42	42	0.0891
43	43	0.331
44	44	0.322
45	45	0.375
46	46	0.0767
47	47	0.018
48	48	0.0446
49	49	0.0638
5	5	0.777
50	50	0.953
51	51	0.686
52	52	0.436
53	53	0.0916
54	54	0.755
55	55	0.648
56	56	0.375
57	57	0.108
58	58	0.15
59	59	0.542
6	6	0.433
60	60	0.506
61	61	0.181
62	62	0.0776
63	63	0.338
64	64	0.109
65	65	0.726
66	66	0.746
67	67	0.608
68	68	0.939
69	69	0.928
7	7	0.363
70	70	0.124
71	71	0.0344
72	72	0.216
73	73	0.688
74	74	0.596
75	75	0.00928
76	76	0.214
77	77	0.723
78	78	0.0285
79	79	0.668
8	8	0.328
80	80	0.546
81	81	0.391
82	82	0.109
83	83	0.409
84	84	0.0366
85	85	0.919
86	86	0.206
87	87	0.993
88	88	0.841
89	89	0.315
9	9	0.862
90	90	0.0526
91	91	0.377
92	92	0.406
93	93	0.487
94	94	0.146
95	95	0.0436
96	96	0.2
97	97	0.19
98	98	0.346
99	99	0.452

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13813

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000078,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0000974,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001042,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001557,UBERON:0002050,UBERON:0002193,UBERON:0002342,UBERON:0002346,UBERON:0002368,UBERON:0002370,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002530,UBERON:0002532,UBERON:0003075,UBERON:0003104,UBERON:0003295,UBERON:0003351,UBERON:0003408,UBERON:0003929,UBERON:0004119,UBERON:0004120,UBERON:0004121,UBERON:0004177,UBERON:0004185,UBERON:0004807,UBERON:0004921,UBERON:0005057,UBERON:0005058,UBERON:0005291,UBERON:0005423,UBERON:0005428,UBERON:0005434,UBERON:0005562,UBERON:0005911,UBERON:0006562,UBERON:0006598,UBERON:0007026,UBERON:0007284,UBERON:0007690,UBERON:0009113,UBERON:0009142,UBERON:0009145
+|DRA_sample_Accession=CAGE@SAMD00005773
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000084,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000624,CL:0000723,CL:0000738,CL:0000789,CL:0000790,CL:0000791,CL:0000805,CL:0000806,CL:0000807,CL:0000808,CL:0000809,CL:0000810,CL:0000813,CL:0000827,CL:0000837,CL:0000838,CL:0000893,CL:0000894,CL:0000895,CL:0000896,CL:0000897,CL:0000898,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371,CL:0002419,CL:0002420,CL:0002425,CL:0002427,CL:0002428,CL:0002429,CL:0002431,CL:0002432,CL:0002433,CL:0002436,CL:0002489
+|accession_numbers=CAGE;DRX008188;DRR009060;DRZ000485;DRZ001870;DRZ011835;DRZ013220
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
 |comment=Changed from previous label. TODO: full classification
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:50343634..50343717,+!p2@IKZF1!1.82!65.78!IKZF1;;chr10:8096631..8096660,+!p1@GATA3!1.70!58.87!GATA3;;chr20:50159198..50159299,-!p1@NFATC2!1.63!60.18!NFATC2;;chr2:231090433..231090469,+!p1@SP140!1.63!41.77!SP140;;chr10:8096772..8096787,+!p2@GATA3!1.61!47.19!GATA3;;chr7:50344251..50344288,+!p3@IKZF1!1.59!37.82!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.86!IKZF1;;chr5:133450365..133450444,+!p1@TCF7!1.54!147.99!TCF7;;chr2:192015701..192015743,-!p1@STAT4!1.54!45.88!STAT4;;chr3:18486354..18486377,-!p2@SATB1!1.54!41.77!SATB1;;chr6:391743..391759,+!p1@IRF4!1.53!32.72!IRF4;;chr9:117150254..117150271,-!p1@AKNA!1.52!84.85!AKNA;;chr17:1959369..1959388,+!p2@HIC1!1.49!76.46!HIC1;;chr8:60031619..60031676,-!p1@TOX!1.45!57.88!TOX;;chr4:109087445..109087463,-!p1@LEF1!1.44!26.80!LEF1;;chr5:133451294..133451310,+!p2@TCF7!1.44!26.31!TCF7;;chrY:21906594..21906622,-!p1@KDM5D!1.42!25.16!KDM5D;;chr2:192015750..192015793,-!p2@STAT4!1.41!33.05!STAT4;;chr16:68119324..68119364,+!p1@NFATC3!1.39!103.43!NFATC3;;chr1:92951607..92951661,-!p1@GFI1!1.39!23.35!GFI1;;chr14:75988771..75988826,+!p1@BATF!1.37!29.60!BATF;;chrX:49121165..49121179,-!p1@FOXP3!1.37!22.69!FOXP3;;chr1:25291475..25291511,-!p2@RUNX3!1.36!22.03!RUNX3;;chr7:50348268..50348366,+!p4@IKZF1!1.36!21.71!IKZF1;;chr3:63953435..63953499,+!p1@ATXN7!1.32!19.90!ATXN7;;chr3:71355163..71355209,-!p5@FOXP1!1.31!26.64!FOXP1;;chr7:50343895..50343936,+!p5@IKZF1!1.23!16.11!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.22!15.46!ZBP1;;chr2:231090471..231090504,+!p2@SP140!1.21!15.29!SP140;;chr4:109089901..109089930,-!p3@LEF1!1.20!14.80!LEF1;;chr14:99738138..99738163,-!p1@BCL11B!1.15!13.16!BCL11B;;chr17:38020392..38020477,-!p1@IKZF3!1.14!12.66!IKZF3;;chr19:19729477..19729542,-!p1@PBX4!1.13!26.80!PBX4;;chr4:109088940..109089037,-!p4@LEF1!1.11!11.84!LEF1;;chr1:25256756..25256774,-!p1@RUNX3!1.07!20.55!RUNX3;;chr10:8095593..8095625,+!p3@GATA3!1.04!11.68!GATA3;;chr20:56195525..56195556,-!p2@ZBP1!1.04!10.03!ZBP1;;chr3:18480217..18480239,-!p3@SATB1!1.04!10.03!SATB1;;chr4:109090075..109090095,-!p2@LEF1!1.03!9.70!LEF1;;chr21:36421535..36421610,-!p2@RUNX1!1.02!34.20!RUNX1;;chr13:41593425..41593480,-!p1@ELF1!1.01!59.69!ELF1;;chr6:91006518..91006570,-!p1@BACH2!1.01!21.71!BACH2;;chr12:56415246..56415286,+!p2@IKZF4!1.01!9.21!IKZF4;;chr5:176738887..176738934,-!p1@MXD3!0.99!60.02!MXD3;;chr6:15401104..15401166,+!p5@JARID2!0.99!8.72!JARID2;;chr1:23857698..23857733,-!p1@E2F2!0.98!15.95!E2F2;;chr2:8822176..8822196,+!p1@ID2!0.97!1200.56!ID2;;chr3:18466787..18466839,-!p1@SATB1!0.97!38.31!SATB1;;chr17:46621146..46621180,-!p10@HOXB2!0.97!8.39!HOXB2;;chr16:79634624..79634642,-!p1@MAF!0.96!33.22!MAF;;chr17:45810594..45810608,+!p1@TBX21!0.96!8.22!TBX21;;chr16:88752889..88752921,-!p1@SNAI3!0.95!9.21!SNAI3;;chr19:16435625..16435682,+!p1@KLF2!0.94!258.83!KLF2;;chr7:77428066..77428132,+!p2@PHTF2!0.94!52.13!PHTF2;;chr4:109088089..109088101,-!p11@LEF1!0.94!7.73!LEF1;;chr8:60031563..60031574,-!p7@TOX!0.93!7.56!TOX;;chr11:128392085..128392232,-!p1@ETS1!0.91!250.93!ETS1;;chr11:128563948..128564003,+!p1@FLI1!0.91!90.77!FLI1;;chrX:134477924..134477988,-!p1@ZNF75D!0.91!27.79!ZNF75D;;chr10:35484053..35484076,+!p1@CREM!0.90!17.76!CREM;;chr2:97202991..97203043,+!p3@ARID5A!0.89!6.74!ARID5A;;chr16:79634595..79634620,-!p2@MAF!0.88!12.50!MAF;;chr11:47236584..47236679,+!p1@DDB2!0.87!73.83!DDB2;;chr7:137620650..137620677,-!p3@CREB3L2!0.87!6.41!CREB3L2;;chr15:60884706..60884743,-!p1@RORA!0.86!33.87!RORA;;chr5:321810..321877,+!p1@AHRR!0.86!20.88!AHRR;;chr4:109088130..109088163,-!p13@LEF1!0.86!6.25!LEF1;;chr3:71542684..71542720,-!p18@FOXP1!0.83!5.76!FOXP1;;chr1:3569072..3569093,+!p1@TP73!0.83!5.76!TP73;;chr5:131826457..131826514,-!p1@IRF1!0.82!234.65!IRF1;;chr3:71179699..71179744,-!p2@FOXP1!0.82!45.55!FOXP1;;chr17:40440481..40440550,+!p1@STAT5A!0.82!43.08!STAT5A;;chr2:148778973..148779035,+!p3@MBD5!0.82!15.46!MBD5;;chr11:128331703..128331717,-!p8@ETS1!0.82!5.59!ETS1;;chr2:231084659..231084721,-!p1@SP110!0.81!137.47!SP110;;chr2:214015111..214015179,-!p1@IKZF2!0.81!10.20!IKZF2;;chr1:92949331..92949377,-!p2@GFI1!0.81!5.43!GFI1;;chr20:52226313..52226350,-!p3@ZNF217!0.81!5.43!ZNF217;;chr4:185395633..185395651,-!p2@IRF2!0.80!8.88!IRF2;;chr5:133451347..133451358,+!p3@TCF7!0.80!5.26!TCF7;;chr10:8097321..8097348,+!p4@GATA3!0.80!5.26!GATA3;;chr14:75988831..75988847,+!p2@BATF!0.80!5.26!BATF;;chr11:113930425..113930471,+!p1@ZBTB16!0.79!7.73!ZBTB16;;chr2:231090344..231090361,-!p3@SP110!0.79!5.10!SP110;;chr14:99737850..99737852,-!p3@BCL11B!0.79!5.10!BCL11B;;chr3:71007344..71007348,-!p6@FOXP1!0.77!21.38!FOXP1;;chr16:89787937..89787971,+!p1@ZNF276!0.77!13.48!ZNF276;;chr6:15249128..15249177,+!p4@JARID2!0.77!9.37!JARID2;;chr7:137620684..137620711,-!p4@CREB3L2!0.77!4.93!CREB3L2;;chr1:158979686..158979745,+!p1@IFI16!0.76!172.50!IFI16;;chr6:106546808..106546833,+!p3@PRDM1!0.76!6.08!PRDM1;;chr9:20622444..20622468,-!p2@MLLT3!0.75!16.44!MLLT3;;chr20:44600199..44600219,-!p3@ZNF335!0.75!6.41!ZNF335;;chr16:88752861..88752884,-!p2@SNAI3!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13813.11913-125G5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13813.11913-125G5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13813.11913-125G5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13813.11913-125G5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor2.CNhs13813.11913-125G5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11913-125G5
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
+|is_obsolete=
+|library_id=CNhs13813
+|library_id_phase_based=2:CNhs13813
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11913
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11913
 |name=CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2
 |namespace=
@@ Line 44: / Line 62: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |rna_box=125
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=5.5804
 |sample_age=23
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 69: / Line 91: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.5821706603146e-237!GO:0043227;membrane-bound organelle;4.42139456561295e-210!GO:0043231;intracellular membrane-bound organelle;9.95864360878492e-210!GO:0043226;organelle;9.3874509436832e-196!GO:0043229;intracellular organelle;4.50038452327191e-195!GO:0005737;cytoplasm;2.73137583171114e-152!GO:0044422;organelle part;1.03247088208936e-139!GO:0044446;intracellular organelle part;6.5806881191322e-138!GO:0005634;nucleus;1.06557627169792e-105!GO:0044444;cytoplasmic part;1.06557627169792e-105!GO:0032991;macromolecular complex;2.17079750084157e-105!GO:0044237;cellular metabolic process;1.78246246687668e-100!GO:0043170;macromolecule metabolic process;8.06172698954217e-97!GO:0044238;primary metabolic process;5.9435824091794e-96!GO:0030529;ribonucleoprotein complex;8.8359203704601e-87!GO:0044428;nuclear part;2.83675827212852e-80!GO:0003723;RNA binding;5.63429893188895e-76!GO:0043233;organelle lumen;1.99086555352818e-69!GO:0031974;membrane-enclosed lumen;1.99086555352818e-69!GO:0043283;biopolymer metabolic process;4.41714966819704e-64!GO:0005739;mitochondrion;2.75107194140384e-62!GO:0005515;protein binding;1.09981323559645e-58!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.22110348611092e-54!GO:0043234;protein complex;1.99654966800427e-54!GO:0006412;translation;2.59550047601378e-54!GO:0019538;protein metabolic process;5.76440392521368e-51!GO:0010467;gene expression;7.23638337338983e-51!GO:0006396;RNA processing;9.37776649728087e-51!GO:0005840;ribosome;5.46849606133641e-50!GO:0033036;macromolecule localization;2.29921410435309e-48!GO:0044267;cellular protein metabolic process;4.64570875838272e-48!GO:0044260;cellular macromolecule metabolic process;2.19288526242992e-47!GO:0015031;protein transport;2.54273748319766e-46!GO:0031981;nuclear lumen;3.7674240281361e-46!GO:0008104;protein localization;9.28980403281032e-45!GO:0045184;establishment of protein localization;1.60375050638498e-44!GO:0006259;DNA metabolic process;3.29963230954782e-44!GO:0016071;mRNA metabolic process;3.66607425676953e-44!GO:0031090;organelle membrane;4.72302478281188e-44!GO:0003735;structural constituent of ribosome;4.86329657129554e-44!GO:0044429;mitochondrial part;3.22593505079953e-43!GO:0009059;macromolecule biosynthetic process;5.41465043963429e-42!GO:0031967;organelle envelope;4.73278580293534e-41!GO:0031975;envelope;1.10755088028329e-40!GO:0033279;ribosomal subunit;1.53694008228979e-38!GO:0006397;mRNA processing;8.35977318265453e-38!GO:0008380;RNA splicing;1.05560341380139e-37!GO:0016043;cellular component organization and biogenesis;4.17680525813261e-36!GO:0003676;nucleic acid binding;4.67494006082376e-36!GO:0009058;biosynthetic process;2.3024483994078e-35!GO:0044249;cellular biosynthetic process;3.15497477494423e-35!GO:0005829;cytosol;5.02268266951216e-35!GO:0046907;intracellular transport;6.2367094906952e-35!GO:0065003;macromolecular complex assembly;2.46415968329679e-33!GO:0006886;intracellular protein transport;2.54291112275726e-33!GO:0007049;cell cycle;4.63161065102938e-32!GO:0005654;nucleoplasm;2.03873161217382e-30!GO:0006996;organelle organization and biogenesis;2.50670543696315e-30!GO:0000166;nucleotide binding;6.53512266819228e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.09371848090852e-29!GO:0022607;cellular component assembly;4.17293439076622e-29!GO:0043228;non-membrane-bound organelle;7.1067254179242e-29!GO:0043232;intracellular non-membrane-bound organelle;7.1067254179242e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.52941489999819e-29!GO:0005681;spliceosome;1.72142403611345e-28!GO:0005740;mitochondrial envelope;1.1812920384538e-27!GO:0005694;chromosome;4.49203697997971e-27!GO:0019866;organelle inner membrane;6.1667785888233e-27!GO:0031966;mitochondrial membrane;2.29928504538208e-26!GO:0051641;cellular localization;4.01297960957877e-26!GO:0051649;establishment of cellular localization;7.93198796425537e-26!GO:0022402;cell cycle process;9.88267872873344e-26!GO:0044445;cytosolic part;5.1629045948586e-25!GO:0044427;chromosomal part;5.30232960547317e-25!GO:0006974;response to DNA damage stimulus;6.92495836052272e-25!GO:0012501;programmed cell death;1.009803470766e-24!GO:0006915;apoptosis;1.20662878418703e-24!GO:0016070;RNA metabolic process;1.71928588637757e-24!GO:0005743;mitochondrial inner membrane;5.40288395850151e-24!GO:0008219;cell death;2.25192717805809e-23!GO:0016265;death;2.25192717805809e-23!GO:0006512;ubiquitin cycle;5.41962938409371e-23!GO:0044451;nucleoplasm part;6.6098520539468e-23!GO:0051276;chromosome organization and biogenesis;1.27110145090044e-22!GO:0032553;ribonucleotide binding;2.10648762039478e-22!GO:0032555;purine ribonucleotide binding;2.10648762039478e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.52881454587669e-22!GO:0016462;pyrophosphatase activity;4.04040337563233e-22!GO:0006119;oxidative phosphorylation;4.20182137744931e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;4.74788057806096e-22!GO:0000278;mitotic cell cycle;1.32658967910113e-21!GO:0017076;purine nucleotide binding;1.50789564822303e-21!GO:0017111;nucleoside-triphosphatase activity;2.1923466837482e-21!GO:0006281;DNA repair;2.05127321124896e-20!GO:0015935;small ribosomal subunit;2.05436869495546e-20!GO:0044455;mitochondrial membrane part;3.92701474114531e-20!GO:0016874;ligase activity;1.13311165927586e-19!GO:0022618;protein-RNA complex assembly;1.49023510248683e-19!GO:0015934;large ribosomal subunit;2.42875146756767e-19!GO:0005524;ATP binding;2.92611027460615e-19!GO:0043412;biopolymer modification;3.90461564182938e-19!GO:0031980;mitochondrial lumen;4.49148300040975e-19!GO:0005759;mitochondrial matrix;4.49148300040975e-19!GO:0044265;cellular macromolecule catabolic process;9.75775236533703e-19!GO:0006325;establishment and/or maintenance of chromatin architecture;1.15558360042782e-18!GO:0032559;adenyl ribonucleotide binding;1.34760979109514e-18!GO:0022403;cell cycle phase;5.84899818099837e-18!GO:0006323;DNA packaging;7.57067679976818e-18!GO:0030554;adenyl nucleotide binding;1.36196764833447e-17!GO:0012505;endomembrane system;1.73558931487383e-17!GO:0042981;regulation of apoptosis;1.97238424683489e-17!GO:0006605;protein targeting;3.02735470922455e-17!GO:0043067;regulation of programmed cell death;3.55711298409203e-17!GO:0000087;M phase of mitotic cell cycle;4.53433948118612e-17!GO:0006464;protein modification process;5.5064063699243e-17!GO:0005746;mitochondrial respiratory chain;7.19051111278472e-17!GO:0006913;nucleocytoplasmic transport;1.00869885907934e-16!GO:0007067;mitosis;1.09989045024017e-16!GO:0005730;nucleolus;2.12733639197718e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.21593433484875e-16!GO:0016604;nuclear body;2.21593433484875e-16!GO:0019941;modification-dependent protein catabolic process;2.32596286591624e-16!GO:0043632;modification-dependent macromolecule catabolic process;2.32596286591624e-16!GO:0051169;nuclear transport;2.52394067530288e-16!GO:0016887;ATPase activity;4.28009607741256e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.99093319896252e-16!GO:0044257;cellular protein catabolic process;5.566675199985e-16!GO:0000785;chromatin;5.82674669027836e-16!GO:0051726;regulation of cell cycle;8.59837981408271e-16!GO:0043285;biopolymer catabolic process;8.9056183042971e-16!GO:0042623;ATPase activity, coupled;9.35816638737019e-16!GO:0000502;proteasome complex (sensu Eukaryota);9.70445048914467e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.10664798418444e-15!GO:0003954;NADH dehydrogenase activity;1.10664798418444e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.10664798418444e-15!GO:0008135;translation factor activity, nucleic acid binding;1.20673118074274e-15!GO:0000074;regulation of progression through cell cycle;1.43349088383866e-15!GO:0043687;post-translational protein modification;1.47412770361736e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.49289932100534e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.51509896259906e-15!GO:0009719;response to endogenous stimulus;1.56974011841701e-15!GO:0051301;cell division;2.86186448704644e-15!GO:0006333;chromatin assembly or disassembly;3.51900155114162e-15!GO:0006457;protein folding;3.56146734156473e-15!GO:0000279;M phase;5.98668689673333e-15!GO:0009057;macromolecule catabolic process;1.10201330484082e-14!GO:0005635;nuclear envelope;2.61520159444495e-14!GO:0008134;transcription factor binding;3.3161051052897e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.37101497656099e-14!GO:0065004;protein-DNA complex assembly;4.09596916595232e-14!GO:0042775;organelle ATP synthesis coupled electron transport;9.15355680266738e-14!GO:0042773;ATP synthesis coupled electron transport;9.15355680266738e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.02425901776276e-13!GO:0000375;RNA splicing, via transesterification reactions;1.02425901776276e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.02425901776276e-13!GO:0048770;pigment granule;1.03963550993077e-13!GO:0042470;melanosome;1.03963550993077e-13!GO:0031965;nuclear membrane;1.31943387705155e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.38389309240736e-13!GO:0045271;respiratory chain complex I;1.38389309240736e-13!GO:0005747;mitochondrial respiratory chain complex I;1.38389309240736e-13!GO:0005761;mitochondrial ribosome;1.78377539471206e-13!GO:0000313;organellar ribosome;1.78377539471206e-13!GO:0044248;cellular catabolic process;1.84367668839682e-13!GO:0006260;DNA replication;3.93413931271476e-13!GO:0050794;regulation of cellular process;3.97649393716518e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.79231840396744e-13!GO:0003743;translation initiation factor activity;7.57860824551308e-13!GO:0044453;nuclear membrane part;7.70230512842176e-13!GO:0006413;translational initiation;1.20885283924648e-12!GO:0051186;cofactor metabolic process;2.51633372441654e-12!GO:0016607;nuclear speck;2.54463001680806e-12!GO:0006334;nucleosome assembly;4.19828300378047e-12!GO:0030163;protein catabolic process;4.68048281488862e-12!GO:0017038;protein import;9.1070309751105e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.33310539521904e-12!GO:0004386;helicase activity;9.33310539521904e-12!GO:0044432;endoplasmic reticulum part;1.75350804977337e-11!GO:0031497;chromatin assembly;2.11101189234191e-11!GO:0048193;Golgi vesicle transport;2.40430906972466e-11!GO:0006793;phosphorus metabolic process;3.62491067891469e-11!GO:0006796;phosphate metabolic process;3.62491067891469e-11!GO:0051082;unfolded protein binding;4.37258953515799e-11!GO:0005783;endoplasmic reticulum;5.10637249160281e-11!GO:0006446;regulation of translational initiation;6.57399597420857e-11!GO:0042254;ribosome biogenesis and assembly;9.33225816423087e-11!GO:0008639;small protein conjugating enzyme activity;1.05065515265015e-10!GO:0016568;chromatin modification;1.23734900368415e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.65647199202441e-10!GO:0005643;nuclear pore;1.95262431310504e-10!GO:0004842;ubiquitin-protein ligase activity;2.09560169341073e-10!GO:0019787;small conjugating protein ligase activity;2.09560169341073e-10!GO:0006732;coenzyme metabolic process;6.10877051156491e-10!GO:0009259;ribonucleotide metabolic process;6.28513366366128e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.50835421116249e-10!GO:0008026;ATP-dependent helicase activity;7.08662099542025e-10!GO:0043566;structure-specific DNA binding;8.29026708943647e-10!GO:0016787;hydrolase activity;9.32064811067029e-10!GO:0005794;Golgi apparatus;9.33639074664101e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.98041254514115e-10!GO:0005789;endoplasmic reticulum membrane;1.01403934217513e-09!GO:0006916;anti-apoptosis;1.01691784800922e-09!GO:0003697;single-stranded DNA binding;1.08798690964682e-09!GO:0050657;nucleic acid transport;1.25949407253553e-09!GO:0051236;establishment of RNA localization;1.25949407253553e-09!GO:0050658;RNA transport;1.25949407253553e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.2619791376013e-09!GO:0006403;RNA localization;1.32334658121449e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.81668922252108e-09!GO:0006164;purine nucleotide biosynthetic process;2.04007109225402e-09!GO:0006163;purine nucleotide metabolic process;2.10503278268145e-09!GO:0019829;cation-transporting ATPase activity;2.13305763220011e-09!GO:0043069;negative regulation of programmed cell death;2.42903651578501e-09!GO:0009260;ribonucleotide biosynthetic process;2.48943035270796e-09!GO:0008565;protein transporter activity;2.91824943504298e-09!GO:0065002;intracellular protein transport across a membrane;3.46054773408142e-09!GO:0043066;negative regulation of apoptosis;3.63235754299243e-09!GO:0016310;phosphorylation;3.66116331951227e-09!GO:0016881;acid-amino acid ligase activity;4.90826079900105e-09!GO:0051170;nuclear import;5.71227851950343e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.71227851950343e-09!GO:0046930;pore complex;6.08386401723142e-09!GO:0009150;purine ribonucleotide metabolic process;6.1825379580648e-09!GO:0007243;protein kinase cascade;6.46408556585092e-09!GO:0006606;protein import into nucleus;8.47452081434839e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.08718997427671e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.16975051186676e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.33734587265715e-08!GO:0051246;regulation of protein metabolic process;1.45960466602163e-08!GO:0003712;transcription cofactor activity;1.54046848786921e-08!GO:0016192;vesicle-mediated transport;1.89762179889327e-08!GO:0000786;nucleosome;1.89762179889327e-08!GO:0006399;tRNA metabolic process;2.11137900803784e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.35180274332989e-08!GO:0050789;regulation of biological process;2.63664533600975e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.58744804568153e-08!GO:0009060;aerobic respiration;3.58744804568153e-08!GO:0006917;induction of apoptosis;4.95769257365754e-08!GO:0051028;mRNA transport;4.98818299070443e-08!GO:0065009;regulation of a molecular function;6.16941654114625e-08!GO:0048523;negative regulation of cellular process;6.41286669698871e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.57541125995291e-08!GO:0004298;threonine endopeptidase activity;7.33411121594074e-08!GO:0019222;regulation of metabolic process;7.57820341279783e-08!GO:0015986;ATP synthesis coupled proton transport;8.02159754865818e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.02159754865818e-08!GO:0012502;induction of programmed cell death;8.31587181456495e-08!GO:0051188;cofactor biosynthetic process;8.31587181456495e-08!GO:0016740;transferase activity;9.00239835412594e-08!GO:0043065;positive regulation of apoptosis;1.14320933604341e-07!GO:0005768;endosome;1.30349787919625e-07!GO:0045786;negative regulation of progression through cell cycle;1.49857555178253e-07!GO:0016779;nucleotidyltransferase activity;1.53482669840009e-07!GO:0043068;positive regulation of programmed cell death;1.84627277670744e-07!GO:0009055;electron carrier activity;2.18877653865661e-07!GO:0016072;rRNA metabolic process;2.33115955724796e-07!GO:0006364;rRNA processing;2.40233327855377e-07!GO:0000775;chromosome, pericentric region;2.40476702153773e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.45401868193118e-07!GO:0045333;cellular respiration;4.9698308242419e-07!GO:0006261;DNA-dependent DNA replication;5.01635029371232e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.26766988824903e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.26766988824903e-07!GO:0032446;protein modification by small protein conjugation;5.91918201484147e-07!GO:0006754;ATP biosynthetic process;5.9663529388946e-07!GO:0006753;nucleoside phosphate metabolic process;5.9663529388946e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.77427586053819e-07!GO:0004812;aminoacyl-tRNA ligase activity;6.77427586053819e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.77427586053819e-07!GO:0048519;negative regulation of biological process;7.13588792436925e-07!GO:0005819;spindle;7.13588792436925e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.58051442353535e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.72915107032347e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.72915107032347e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.72915107032347e-07!GO:0006888;ER to Golgi vesicle-mediated transport;7.74246942324086e-07!GO:0009141;nucleoside triphosphate metabolic process;7.7899348619497e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.82883974675613e-07!GO:0009056;catabolic process;9.54428950832945e-07!GO:0030120;vesicle coat;1.01853273339274e-06!GO:0030662;coated vesicle membrane;1.01853273339274e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.09268201675839e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.12512541948611e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.12512541948611e-06!GO:0019899;enzyme binding;1.19589123995899e-06!GO:0045259;proton-transporting ATP synthase complex;1.34094640382409e-06!GO:0016567;protein ubiquitination;1.35108733061306e-06!GO:0046034;ATP metabolic process;1.37231659312951e-06!GO:0000245;spliceosome assembly;1.39076136644998e-06!GO:0043038;amino acid activation;1.39779885249561e-06!GO:0006418;tRNA aminoacylation for protein translation;1.39779885249561e-06!GO:0043039;tRNA aminoacylation;1.39779885249561e-06!GO:0006461;protein complex assembly;1.63117283432837e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.89784064928948e-06!GO:0015399;primary active transmembrane transporter activity;1.89784064928948e-06!GO:0048522;positive regulation of cellular process;1.95107362009174e-06!GO:0006099;tricarboxylic acid cycle;2.02193124704869e-06!GO:0046356;acetyl-CoA catabolic process;2.02193124704869e-06!GO:0048475;coated membrane;2.21962626458614e-06!GO:0030117;membrane coat;2.21962626458614e-06!GO:0015630;microtubule cytoskeleton;2.25567159020437e-06!GO:0005813;centrosome;2.37555656835667e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.42115244893033e-06!GO:0006310;DNA recombination;2.57904157043534e-06!GO:0008632;apoptotic program;2.75485973415593e-06!GO:0007242;intracellular signaling cascade;2.87843979247272e-06!GO:0005815;microtubule organizing center;3.82409939461315e-06!GO:0051329;interphase of mitotic cell cycle;4.21665378010562e-06!GO:0051325;interphase;4.39862747455364e-06!GO:0009108;coenzyme biosynthetic process;4.40276088050104e-06!GO:0031323;regulation of cellular metabolic process;4.49267727417377e-06!GO:0009117;nucleotide metabolic process;4.57513791625207e-06!GO:0051168;nuclear export;4.57513791625207e-06!GO:0000075;cell cycle checkpoint;4.74108634090601e-06!GO:0006366;transcription from RNA polymerase II promoter;5.36585540493857e-06!GO:0005793;ER-Golgi intermediate compartment;5.81108626282981e-06!GO:0006084;acetyl-CoA metabolic process;6.54397552758065e-06!GO:0000151;ubiquitin ligase complex;7.15739716131109e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.68808889064051e-06!GO:0031324;negative regulation of cellular metabolic process;7.70699251871629e-06!GO:0006613;cotranslational protein targeting to membrane;9.43432614406146e-06!GO:0003713;transcription coactivator activity;9.75845489163259e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.03891872896956e-05!GO:0007005;mitochondrion organization and biogenesis;1.17620638642227e-05!GO:0007088;regulation of mitosis;1.31187926284524e-05!GO:0003724;RNA helicase activity;1.31288796540049e-05!GO:0006752;group transfer coenzyme metabolic process;1.4365069608728e-05!GO:0006401;RNA catabolic process;1.46705690968273e-05!GO:0009615;response to virus;1.57398021049118e-05!GO:0043623;cellular protein complex assembly;1.67881990956982e-05!GO:0009109;coenzyme catabolic process;2.05189773571181e-05!GO:0016563;transcription activator activity;2.15867014338131e-05!GO:0005773;vacuole;2.35678947497225e-05!GO:0004674;protein serine/threonine kinase activity;2.35829748486037e-05!GO:0005657;replication fork;2.51808271517391e-05!GO:0005762;mitochondrial large ribosomal subunit;2.58966087530364e-05!GO:0000315;organellar large ribosomal subunit;2.58966087530364e-05!GO:0005525;GTP binding;3.23621684511699e-05!GO:0051187;cofactor catabolic process;3.63109128502907e-05!GO:0043492;ATPase activity, coupled to movement of substances;3.6821945908784e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;4.28718389186946e-05!GO:0003690;double-stranded DNA binding;4.42030835965915e-05!GO:0006402;mRNA catabolic process;4.93954720287988e-05!GO:0006350;transcription;5.21057835657933e-05!GO:0050790;regulation of catalytic activity;5.39448237207593e-05!GO:0009892;negative regulation of metabolic process;5.86933844742018e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;5.95021168715312e-05!GO:0016363;nuclear matrix;6.3382480955169e-05!GO:0065007;biological regulation;6.55639578083975e-05!GO:0000323;lytic vacuole;6.76299369007793e-05!GO:0005764;lysosome;6.76299369007793e-05!GO:0006612;protein targeting to membrane;6.82974292205931e-05!GO:0003924;GTPase activity;7.85120146068938e-05!GO:0006417;regulation of translation;8.96657974319651e-05!GO:0009967;positive regulation of signal transduction;9.26126864094961e-05!GO:0005770;late endosome;0.000111678068520434!GO:0008094;DNA-dependent ATPase activity;0.000113772578485126!GO:0003899;DNA-directed RNA polymerase activity;0.000117092334842008!GO:0016564;transcription repressor activity;0.000142001876793067!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000149838957481163!GO:0044440;endosomal part;0.000155349931778251!GO:0010008;endosome membrane;0.000155349931778251!GO:0005885;Arp2/3 protein complex;0.000166978127926431!GO:0015992;proton transport;0.000179865656035117!GO:0006818;hydrogen transport;0.000180532840827541!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000182863095466102!GO:0010468;regulation of gene expression;0.000191564061861792!GO:0044431;Golgi apparatus part;0.000203267128056557!GO:0003684;damaged DNA binding;0.000204658186088745!GO:0048518;positive regulation of biological process;0.000219062238385346!GO:0051427;hormone receptor binding;0.000219465720825264!GO:0005798;Golgi-associated vesicle;0.0002257144411172!GO:0042110;T cell activation;0.000238657514996928!GO:0006302;double-strand break repair;0.000240421994103164!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000245548119214913!GO:0032561;guanyl ribonucleotide binding;0.000281216674589657!GO:0019001;guanyl nucleotide binding;0.000281216674589657!GO:0005637;nuclear inner membrane;0.000281325601060063!GO:0008186;RNA-dependent ATPase activity;0.000281325601060063!GO:0003729;mRNA binding;0.000285774835176593!GO:0007051;spindle organization and biogenesis;0.000287300909019279!GO:0000314;organellar small ribosomal subunit;0.000319943609419156!GO:0005763;mitochondrial small ribosomal subunit;0.000319943609419156!GO:0030384;phosphoinositide metabolic process;0.000323483460218217!GO:0000776;kinetochore;0.000368583192527728!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000377126498053776!GO:0008234;cysteine-type peptidase activity;0.000381206394504366!GO:0035257;nuclear hormone receptor binding;0.000423004847593458!GO:0007059;chromosome segregation;0.000450368608664068!GO:0031326;regulation of cellular biosynthetic process;0.000455270551514633!GO:0043021;ribonucleoprotein binding;0.000455698062466078!GO:0051052;regulation of DNA metabolic process;0.000463963477091438!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000467901673716299!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000505057123786908!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000532413710745036!GO:0008654;phospholipid biosynthetic process;0.000565502521216746!GO:0060090;molecular adaptor activity;0.000573859961430267!GO:0007093;mitotic cell cycle checkpoint;0.00062432852867787!GO:0004518;nuclease activity;0.00062432852867787!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000626301184872133!GO:0007006;mitochondrial membrane organization and biogenesis;0.000637922767802867!GO:0005667;transcription factor complex;0.00069851422305896!GO:0006650;glycerophospholipid metabolic process;0.000790243657727158!GO:0003682;chromatin binding;0.000804643207609574!GO:0003678;DNA helicase activity;0.000805224727931007!GO:0048468;cell development;0.000820567581617647!GO:0043681;protein import into mitochondrion;0.000825766231794796!GO:0004004;ATP-dependent RNA helicase activity;0.000828984511124351!GO:0051252;regulation of RNA metabolic process;0.000828984511124351!GO:0006289;nucleotide-excision repair;0.00086695696750566!GO:0006891;intra-Golgi vesicle-mediated transport;0.000911892742525228!GO:0005769;early endosome;0.000968682022643794!GO:0009165;nucleotide biosynthetic process;0.000972648743623479!GO:0019843;rRNA binding;0.000991781256536401!GO:0000082;G1/S transition of mitotic cell cycle;0.0010350447773913!GO:0016481;negative regulation of transcription;0.0010350447773913!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00103798820638411!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00103798820638411!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00103798820638411!GO:0006414;translational elongation;0.00105170224410604!GO:0003677;DNA binding;0.00116097231795048!GO:0001772;immunological synapse;0.00123991380252955!GO:0007050;cell cycle arrest;0.00125065636953435!GO:0006352;transcription initiation;0.00135667372443791!GO:0006611;protein export from nucleus;0.0013679903571918!GO:0008270;zinc ion binding;0.00139678189617393!GO:0046489;phosphoinositide biosynthetic process;0.00147174678419473!GO:0004527;exonuclease activity;0.00150350014499187!GO:0005048;signal sequence binding;0.00150350014499187!GO:0031072;heat shock protein binding;0.00151364471504767!GO:0000287;magnesium ion binding;0.00154842740715971!GO:0030658;transport vesicle membrane;0.00160256988977362!GO:0006383;transcription from RNA polymerase III promoter;0.0016292159473173!GO:0019867;outer membrane;0.0016478767578392!GO:0005741;mitochondrial outer membrane;0.00165023636829925!GO:0000228;nuclear chromosome;0.00179789243820458!GO:0031968;organelle outer membrane;0.00182991325860532!GO:0048500;signal recognition particle;0.00185298926250677!GO:0016741;transferase activity, transferring one-carbon groups;0.00197845394183924!GO:0051251;positive regulation of lymphocyte activation;0.00200038894753754!GO:0008168;methyltransferase activity;0.0021183905253286!GO:0000139;Golgi membrane;0.00212861127618706!GO:0016605;PML body;0.002246089578383!GO:0016853;isomerase activity;0.00235221895172239!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00235221895172239!GO:0032259;methylation;0.00242457612030536!GO:0022415;viral reproductive process;0.00242457612030536!GO:0051789;response to protein stimulus;0.00254298083205363!GO:0006986;response to unfolded protein;0.00254298083205363!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00262364378162358!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00262364378162358!GO:0031982;vesicle;0.00262515658545309!GO:0005684;U2-dependent spliceosome;0.00265258437355933!GO:0046474;glycerophospholipid biosynthetic process;0.00276759988471511!GO:0032774;RNA biosynthetic process;0.00278470730324357!GO:0022890;inorganic cation transmembrane transporter activity;0.0027902365203178!GO:0045454;cell redox homeostasis;0.00291033627169309!GO:0007265;Ras protein signal transduction;0.0029885090536203!GO:0016311;dephosphorylation;0.00328808013354916!GO:0006351;transcription, DNA-dependent;0.00332190447903864!GO:0007264;small GTPase mediated signal transduction;0.00336260406592861!GO:0051092;activation of NF-kappaB transcription factor;0.00346697645473328!GO:0005774;vacuolar membrane;0.00350324283716798!GO:0006607;NLS-bearing substrate import into nucleus;0.00354361190162957!GO:0043414;biopolymer methylation;0.00359155878328273!GO:0042101;T cell receptor complex;0.00360204324285017!GO:0006405;RNA export from nucleus;0.00360452590889748!GO:0009889;regulation of biosynthetic process;0.0036335731168686!GO:0047485;protein N-terminus binding;0.0036335731168686!GO:0051920;peroxiredoxin activity;0.00367468288313543!GO:0046822;regulation of nucleocytoplasmic transport;0.00369870655630116!GO:0032508;DNA duplex unwinding;0.00385109215662165!GO:0032392;DNA geometric change;0.00385109215662165!GO:0051223;regulation of protein transport;0.00397280544669028!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00407029680432428!GO:0045047;protein targeting to ER;0.00407029680432428!GO:0008033;tRNA processing;0.00414837375081101!GO:0030660;Golgi-associated vesicle membrane;0.00426850399734918!GO:0042802;identical protein binding;0.00433050647104251!GO:0045449;regulation of transcription;0.00443774787407874!GO:0003711;transcription elongation regulator activity;0.00445663331085019!GO:0006338;chromatin remodeling;0.00448921633877842!GO:0008624;induction of apoptosis by extracellular signals;0.00478680939631465!GO:0043488;regulation of mRNA stability;0.00483135345815352!GO:0043487;regulation of RNA stability;0.00483135345815352!GO:0008312;7S RNA binding;0.00484178523767418!GO:0009124;nucleoside monophosphate biosynthetic process;0.00485452749485011!GO:0009123;nucleoside monophosphate metabolic process;0.00485452749485011!GO:0015631;tubulin binding;0.00487392029089801!GO:0046649;lymphocyte activation;0.00488588681958085!GO:0016251;general RNA polymerase II transcription factor activity;0.00494373079903364!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00558453334847194!GO:0000059;protein import into nucleus, docking;0.00566346388457551!GO:0042393;histone binding;0.00597076486689292!GO:0019901;protein kinase binding;0.0059855436719568!GO:0006284;base-excision repair;0.00600997214753032!GO:0044452;nucleolar part;0.00603374054280372!GO:0016788;hydrolase activity, acting on ester bonds;0.00603374054280372!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00603974330783298!GO:0030118;clathrin coat;0.00605386787481321!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.00613880720712079!GO:0048471;perinuclear region of cytoplasm;0.00620061026977002!GO:0050870;positive regulation of T cell activation;0.00625749553311666!GO:0044438;microbody part;0.00628168923297536!GO:0044439;peroxisomal part;0.00628168923297536!GO:0000209;protein polyubiquitination;0.00628168923297536!GO:0003714;transcription corepressor activity;0.00628168923297536!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00628168923297536!GO:0015002;heme-copper terminal oxidase activity;0.00628168923297536!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00628168923297536!GO:0004129;cytochrome-c oxidase activity;0.00628168923297536!GO:0031988;membrane-bound vesicle;0.00634576031471554!GO:0016197;endosome transport;0.00649237820050049!GO:0030518;steroid hormone receptor signaling pathway;0.00659100999196086!GO:0005070;SH3/SH2 adaptor activity;0.0066348913234377!GO:0005765;lysosomal membrane;0.00664750542373414!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00677461628457832!GO:0031902;late endosome membrane;0.00679435606794564!GO:0031410;cytoplasmic vesicle;0.00688635015421248!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0069927427864631!GO:0030663;COPI coated vesicle membrane;0.00705403700929562!GO:0030126;COPI vesicle coat;0.00705403700929562!GO:0006268;DNA unwinding during replication;0.0070814249681758!GO:0008139;nuclear localization sequence binding;0.00713993622635803!GO:0008637;apoptotic mitochondrial changes;0.00724988556760447!GO:0031124;mRNA 3'-end processing;0.00724988556760447!GO:0030880;RNA polymerase complex;0.00724988556760447!GO:0007052;mitotic spindle organization and biogenesis;0.00731563298415704!GO:0051539;4 iron, 4 sulfur cluster binding;0.00737389399143542!GO:0042770;DNA damage response, signal transduction;0.00738861945371989!GO:0044454;nuclear chromosome part;0.00754744082328486!GO:0044437;vacuolar part;0.00763077612397552!GO:0051087;chaperone binding;0.00763077612397552!GO:0030137;COPI-coated vesicle;0.00775538839243857!GO:0051090;regulation of transcription factor activity;0.00781260202042234!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00783223015836609!GO:0016584;nucleosome positioning;0.00787988415713319!GO:0000922;spindle pole;0.00803514315932351!GO:0019900;kinase binding;0.0080740340778985!GO:0033116;ER-Golgi intermediate compartment membrane;0.0081307158865306!GO:0045936;negative regulation of phosphate metabolic process;0.00817728872894256!GO:0015980;energy derivation by oxidation of organic compounds;0.00822504331998465!GO:0043281;regulation of caspase activity;0.00826980474553921!GO:0046966;thyroid hormone receptor binding;0.00840209329200912!GO:0006497;protein amino acid lipidation;0.00856073954611247!GO:0016791;phosphoric monoester hydrolase activity;0.00862145875462691!GO:0030127;COPII vesicle coat;0.00862145875462691!GO:0012507;ER to Golgi transport vesicle membrane;0.00862145875462691!GO:0048487;beta-tubulin binding;0.00864663557610204!GO:0031252;leading edge;0.00864663557610204!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00904455377538087!GO:0043596;nuclear replication fork;0.00909875903484608!GO:0030176;integral to endoplasmic reticulum membrane;0.00913318148657021!GO:0030521;androgen receptor signaling pathway;0.00951886643469305!GO:0051249;regulation of lymphocyte activation;0.00973344662502372!GO:0051881;regulation of mitochondrial membrane potential;0.00977163607264085!GO:0006626;protein targeting to mitochondrion;0.00978908314227346!GO:0031903;microbody membrane;0.00989821529170688!GO:0005778;peroxisomal membrane;0.00989821529170688!GO:0050865;regulation of cell activation;0.00995062515973633!GO:0006506;GPI anchor biosynthetic process;0.00997117489112231!GO:0016859;cis-trans isomerase activity;0.0100457403193697!GO:0009116;nucleoside metabolic process;0.0101112524975546!GO:0051336;regulation of hydrolase activity;0.0101807597971444!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0104576824324483!GO:0050863;regulation of T cell activation;0.010657268480432!GO:0009161;ribonucleoside monophosphate metabolic process;0.0107922452582155!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0107922452582155!GO:0000910;cytokinesis;0.0109641384688211!GO:0006091;generation of precursor metabolites and energy;0.0110061229791721!GO:0008629;induction of apoptosis by intracellular signals;0.0110820322527315!GO:0030134;ER to Golgi transport vesicle;0.0113570031822409!GO:0006950;response to stress;0.0114425730955825!GO:0000049;tRNA binding;0.0115638092377078!GO:0006505;GPI anchor metabolic process;0.0117863531189089!GO:0016301;kinase activity;0.011929788338353!GO:0051059;NF-kappaB binding;0.0120790843657613!GO:0016272;prefoldin complex;0.0122055251314651!GO:0043621;protein self-association;0.0124630854529438!GO:0051540;metal cluster binding;0.0124630854529438!GO:0051536;iron-sulfur cluster binding;0.0124630854529438!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0124630854529438!GO:0010257;NADH dehydrogenase complex assembly;0.0124630854529438!GO:0033108;mitochondrial respiratory chain complex assembly;0.0124630854529438!GO:0016023;cytoplasmic membrane-bound vesicle;0.0125928363607721!GO:0008022;protein C-terminus binding;0.0131549760084564!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0133082663534405!GO:0000428;DNA-directed RNA polymerase complex;0.0133082663534405!GO:0009112;nucleobase metabolic process;0.0133188472664097!GO:0000792;heterochromatin;0.0133545887787213!GO:0005788;endoplasmic reticulum lumen;0.0142018671651595!GO:0003746;translation elongation factor activity;0.0144856425019143!GO:0030522;intracellular receptor-mediated signaling pathway;0.0146075626808262!GO:0046914;transition metal ion binding;0.0150187471795979!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0150932454471318!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0152686049357073!GO:0006839;mitochondrial transport;0.0153541755502678!GO:0004003;ATP-dependent DNA helicase activity;0.0153541755502678!GO:0004722;protein serine/threonine phosphatase activity;0.0153541755502678!GO:0006595;polyamine metabolic process;0.0153541755502678!GO:0051235;maintenance of localization;0.0154725393489764!GO:0032940;secretion by cell;0.0154725393489764!GO:0005869;dynactin complex;0.0157180332752049!GO:0045045;secretory pathway;0.0161549355448986!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0163869266085407!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0163869266085407!GO:0009126;purine nucleoside monophosphate metabolic process;0.0163869266085407!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0163869266085407!GO:0051338;regulation of transferase activity;0.0164763895791381!GO:0003725;double-stranded RNA binding;0.016544358237993!GO:0004576;oligosaccharyl transferase activity;0.0167594438389667!GO:0045321;leukocyte activation;0.0168157095319848!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0175763373950884!GO:0042326;negative regulation of phosphorylation;0.0176972494259088!GO:0009966;regulation of signal transduction;0.0177987145175952!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0178598289010737!GO:0030867;rough endoplasmic reticulum membrane;0.0181552812287889!GO:0006275;regulation of DNA replication;0.018521213976141!GO:0040029;regulation of gene expression, epigenetic;0.0185256239832991!GO:0016569;covalent chromatin modification;0.0185717509995738!GO:0019210;kinase inhibitor activity;0.0186988984217516!GO:0030695;GTPase regulator activity;0.0187432390513193!GO:0046426;negative regulation of JAK-STAT cascade;0.0188500401291637!GO:0016763;transferase activity, transferring pentosyl groups;0.0190932138342101!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0192048302306141!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0192048302306141!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0192048302306141!GO:0031625;ubiquitin protein ligase binding;0.0192550019716746!GO:0031123;RNA 3'-end processing;0.0193093738909026!GO:0022411;cellular component disassembly;0.0193345574735314!GO:0004177;aminopeptidase activity;0.0194754340756693!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0194754340756693!GO:0006919;caspase activation;0.019625994632992!GO:0043549;regulation of kinase activity;0.0197116581017024!GO:0006376;mRNA splice site selection;0.0197116581017024!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0197116581017024!GO:0019783;small conjugating protein-specific protease activity;0.0199408944263905!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0204714673872429!GO:0032200;telomere organization and biogenesis;0.0204714673872429!GO:0000723;telomere maintenance;0.0204714673872429!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0205754361872492!GO:0008047;enzyme activator activity;0.0208923644974938!GO:0006470;protein amino acid dephosphorylation;0.0209128761024282!GO:0004721;phosphoprotein phosphatase activity;0.0209128761024282!GO:0008408;3'-5' exonuclease activity;0.0210380140556029!GO:0004532;exoribonuclease activity;0.0211156585142812!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0211156585142812!GO:0007259;JAK-STAT cascade;0.0219076546393803!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.022084626102228!GO:0030125;clathrin vesicle coat;0.022084626102228!GO:0030665;clathrin coated vesicle membrane;0.022084626102228!GO:0005876;spindle microtubule;0.0221511363370957!GO:0004843;ubiquitin-specific protease activity;0.02230845604123!GO:0035258;steroid hormone receptor binding;0.0226506870511179!GO:0045892;negative regulation of transcription, DNA-dependent;0.0227574875685624!GO:0030132;clathrin coat of coated pit;0.0227809658379746!GO:0051098;regulation of binding;0.0229573707830222!GO:0004860;protein kinase inhibitor activity;0.0231373499050365!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0231532149434504!GO:0008276;protein methyltransferase activity;0.0234148250825022!GO:0046467;membrane lipid biosynthetic process;0.0235650544759575!GO:0045792;negative regulation of cell size;0.023707172538264!GO:0042158;lipoprotein biosynthetic process;0.0239545492559747!GO:0000339;RNA cap binding;0.0245375666204083!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0246014935628836!GO:0008213;protein amino acid alkylation;0.0253616348603689!GO:0006479;protein amino acid methylation;0.0253616348603689!GO:0008250;oligosaccharyl transferase complex;0.0256474342668803!GO:0005669;transcription factor TFIID complex;0.0257414766782897!GO:0005521;lamin binding;0.0260624490704348!GO:0016408;C-acyltransferase activity;0.0265717783608312!GO:0030308;negative regulation of cell growth;0.0268880110593733!GO:0003988;acetyl-CoA C-acyltransferase activity;0.027492547127444!GO:0030833;regulation of actin filament polymerization;0.0276632305942371!GO:0046979;TAP2 binding;0.027935671072041!GO:0046977;TAP binding;0.027935671072041!GO:0046978;TAP1 binding;0.027935671072041!GO:0007346;regulation of progression through mitotic cell cycle;0.0279501027104733!GO:0019079;viral genome replication;0.0279953975770082!GO:0000152;nuclear ubiquitin ligase complex;0.0279953975770082!GO:0043284;biopolymer biosynthetic process;0.0280635003968566!GO:0045859;regulation of protein kinase activity;0.028220335312398!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0282324017609586!GO:0046483;heterocycle metabolic process;0.0290723946717437!GO:0006779;porphyrin biosynthetic process;0.0291868251248198!GO:0033014;tetrapyrrole biosynthetic process;0.0291868251248198!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0291868251248198!GO:0006984;ER-nuclear signaling pathway;0.0293757782716278!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0295046148491335!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0295475868421589!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0297164624934358!GO:0043022;ribosome binding;0.0298789154214783!GO:0006144;purine base metabolic process;0.0304480105030209!GO:0044262;cellular carbohydrate metabolic process;0.0304923779640477!GO:0006378;mRNA polyadenylation;0.0309972689552577!GO:0001836;release of cytochrome c from mitochondria;0.0309972689552577!GO:0008320;protein transmembrane transporter activity;0.0314547527474053!GO:0030041;actin filament polymerization;0.0315206602084449!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0317034302204983!GO:0042608;T cell receptor binding;0.0317175462450462!GO:0016570;histone modification;0.0317175462450462!GO:0006778;porphyrin metabolic process;0.0317175462450462!GO:0033013;tetrapyrrole metabolic process;0.0317175462450462!GO:0044450;microtubule organizing center part;0.0317194653749203!GO:0004221;ubiquitin thiolesterase activity;0.0323150276537502!GO:0004197;cysteine-type endopeptidase activity;0.0323202295242152!GO:0005832;chaperonin-containing T-complex;0.032403209640344!GO:0031570;DNA integrity checkpoint;0.0325074144947164!GO:0048524;positive regulation of viral reproduction;0.0326614437925847!GO:0030433;ER-associated protein catabolic process;0.0326614437925847!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0326614437925847!GO:0050852;T cell receptor signaling pathway;0.0327349240152313!GO:0018193;peptidyl-amino acid modification;0.032821086820755!GO:0005874;microtubule;0.0329135383678227!GO:0006914;autophagy;0.0330030658890977!GO:0043601;nuclear replisome;0.0330030658890977!GO:0030894;replisome;0.0330030658890977!GO:0000738;DNA catabolic process, exonucleolytic;0.0330030658890977!GO:0006355;regulation of transcription, DNA-dependent;0.0330591207597736!GO:0016790;thiolester hydrolase activity;0.0331344916910924!GO:0030119;AP-type membrane coat adaptor complex;0.0336953486317361!GO:0005083;small GTPase regulator activity;0.0339859230031978!GO:0006458;'de novo' protein folding;0.034146189526683!GO:0051084;'de novo' posttranslational protein folding;0.034146189526683!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0342703908575193!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0342703908575193!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.034804148014779!GO:0000018;regulation of DNA recombination;0.0350619040633079!GO:0017134;fibroblast growth factor binding;0.0350883051534728!GO:0006007;glucose catabolic process;0.0351669195670891!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0354388940242344!GO:0033673;negative regulation of kinase activity;0.0355369004991564!GO:0006469;negative regulation of protein kinase activity;0.0355369004991564!GO:0050811;GABA receptor binding;0.0361536310218902!GO:0048002;antigen processing and presentation of peptide antigen;0.0363974386446289!GO:0005784;translocon complex;0.0370538759951157!GO:0030258;lipid modification;0.0374870013953228!GO:0045061;thymic T cell selection;0.0374870013953228!GO:0000118;histone deacetylase complex;0.0375037456652148!GO:0000781;chromosome, telomeric region;0.0385412573977794!GO:0051053;negative regulation of DNA metabolic process;0.038731981310869!GO:0006270;DNA replication initiation;0.0390278708398831!GO:0022884;macromolecule transmembrane transporter activity;0.0390278708398831!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0390278708398831!GO:0000793;condensed chromosome;0.0391925464822761!GO:0000819;sister chromatid segregation;0.0392899541353606!GO:0000096;sulfur amino acid metabolic process;0.0393229475918287!GO:0006730;one-carbon compound metabolic process;0.0402009029431346!GO:0030131;clathrin adaptor complex;0.0404587483943471!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.040542845143733!GO:0019058;viral infectious cycle;0.040686340692024!GO:0008180;signalosome;0.0410391920276924!GO:0045926;negative regulation of growth;0.0411448783940872!GO:0051348;negative regulation of transferase activity;0.0412494066036437!GO:0001784;phosphotyrosine binding;0.0414644296077694!GO:0002440;production of molecular mediator of immune response;0.0414769659012226!GO:0019904;protein domain specific binding;0.0416479828630521!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0418889640889692!GO:0000725;recombinational repair;0.0424120579888308!GO:0000724;double-strand break repair via homologous recombination;0.0424120579888308!GO:0016860;intramolecular oxidoreductase activity;0.0424477692596455!GO:0045058;T cell selection;0.0424477692596455!GO:0002483;antigen processing and presentation of endogenous peptide antigen;0.0424477692596455!GO:0019885;antigen processing and presentation of endogenous peptide antigen via MHC class I;0.0424477692596455!GO:0008017;microtubule binding;0.0424477692596455!GO:0051452;cellular pH reduction;0.0425718117353131!GO:0051453;regulation of cellular pH;0.0425718117353131!GO:0045851;pH reduction;0.0425718117353131!GO:0005095;GTPase inhibitor activity;0.0427077453073659!GO:0045185;maintenance of protein localization;0.0431655719334681!GO:0006740;NADPH regeneration;0.0433194796978187!GO:0006098;pentose-phosphate shunt;0.0433194796978187!GO:0019318;hexose metabolic process;0.0433194796978187!GO:0006013;mannose metabolic process;0.0433353536925985!GO:0019976;interleukin-2 binding;0.0433836158146515!GO:0004911;interleukin-2 receptor activity;0.0433836158146515!GO:0005996;monosaccharide metabolic process;0.0437103023571289!GO:0003887;DNA-directed DNA polymerase activity;0.0439341181490395!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0443221459089763!GO:0030217;T cell differentiation;0.0444634398972537!GO:0007034;vacuolar transport;0.0446472479241718!GO:0030133;transport vesicle;0.0456624460454701!GO:0030332;cyclin binding;0.0456624460454701!GO:0006518;peptide metabolic process;0.0458885845786398!GO:0006406;mRNA export from nucleus;0.0469608518170093!GO:0006266;DNA ligation;0.0471811303836821!GO:0005652;nuclear lamina;0.0473934621598087!GO:0000070;mitotic sister chromatid segregation;0.0474296976344877!GO:0008538;proteasome activator activity;0.0475314156607214!GO:0008287;protein serine/threonine phosphatase complex;0.0481105024025959!GO:0050178;phenylpyruvate tautomerase activity;0.0487441200966178!GO:0051222;positive regulation of protein transport;0.0490101667963834!GO:0022406;membrane docking;0.0492513778418397!GO:0048278;vesicle docking;0.0492513778418397!GO:0000726;non-recombinational repair;0.0492513778418397!GO:0043280;positive regulation of caspase activity;0.0492513778418397!GO:0032813;tumor necrosis factor receptor superfamily binding;0.0498988548892301
 |sample_id=11913
 |sample_note=
@@ Line 76: / Line 99: @@
 |sample_tissue=blood
 |top_motifs=ZBTB16:3.10727220461;PITX1..3:2.66996826321;CDX1,2,4:2.6620889513;PAX4:2.60977452963;IKZF2:2.46732325499;FOXP1:2.34144733851;ELF1,2,4:1.99009667139;POU1F1:1.9030619941;NKX6-1,2:1.88535562006;TOPORS:1.82293051267;PAX3,7:1.74768734853;RUNX1..3:1.68684234724;PDX1:1.56219804393;DMAP1_NCOR{1,2}_SMARC:1.55772207776;NKX3-1:1.45952461453;POU2F1..3:1.3143056485;ETS1,2:1.23135203023;IRF1,2:1.17917743702;SPI1:1.15408308611;FOXO1,3,4:1.00224303707;HOX{A6,A7,B6,B7}:0.992650642948;E2F1..5:0.961772716116;AIRE:0.927696287924;RORA:0.911372137604;BREu{core}:0.89354322687;TLX2:0.881243628239;STAT1,3:0.866170369798;SPZ1:0.856454868264;ELK1,4_GABP{A,B1}:0.828613955131;PBX1:0.820390878807;NKX2-2,8:0.806835451066;SPIB:0.779603929926;IRF7:0.747373919341;NKX2-1,4:0.691069792627;ZNF384:0.664633448765;FOXD3:0.660954713357;GATA6:0.633515516509;NFY{A,B,C}:0.565782742813;CRX:0.553555475401;TGIF1:0.523513449759;BPTF:0.518551988109;FOX{F1,F2,J1}:0.517863727663;OCT4_SOX2{dimer}:0.488487431031;YY1:0.468933879686;FOX{I1,J2}:0.399362192998;NR5A1,2:0.395292299694;SOX5:0.294698811336;NANOG{mouse}:0.27010829014;FOX{D1,D2}:0.234222497801;MYB:0.218895688984;ZEB1:0.207581589089;POU3F1..4:0.204175779189;PAX8:0.169682438383;EVI1:0.169500437086;SNAI1..3:0.127872188084;FOXA2:0.106029618867;CUX2:0.0950157444467;STAT2,4,6:0.081862635367;ALX1:0.0796258903566;FOXM1:0.0506655249756;NFKB1_REL_RELA:0.0412825757287;LMO2:0.00936086777515;CREB1:0.00776021677036;NRF1:0.00107134341135;PAX2:-0.018084604621;FOXP3:-0.0220933449017;MYOD1:-0.0281950463242;LEF1_TCF7_TCF7L1,2:-0.0357820825167;ZNF143:-0.0462040804004;DBP:-0.0462808798625;ATF5_CREB3:-0.0481790318378;HNF4A_NR2F1,2:-0.0811689792954;T:-0.09728256728;FOXQ1:-0.100596539008;GFI1:-0.109061203958;SREBF1,2:-0.127315592626;RREB1:-0.127573428675;HOXA9_MEIS1:-0.167894471271;HES1:-0.168264166409;STAT5{A,B}:-0.181606357493;FOXN1:-0.195020992622;ATF6:-0.199486957102;NR1H4:-0.215575811724;PAX6:-0.239232656171;NFIL3:-0.24677461759;SMAD1..7,9:-0.273080721553;SOX{8,9,10}:-0.274402778946;GCM1,2:-0.282184553759;AHR_ARNT_ARNT2:-0.285327000342;ARID5B:-0.290099055759;NR3C1:-0.332591210666;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.341704771104;HAND1,2:-0.34519606282;RFX2..5_RFXANK_RFXAP:-0.359293435425;AR:-0.364058982932;HNF1A:-0.380230079223;RXRA_VDR{dimer}:-0.403623491341;TFDP1:-0.418043262751;PRRX1,2:-0.418434303776;CDC5L:-0.433639444013;UFEwm:-0.439556612108;NR6A1:-0.443056845179;NFE2L1:-0.444963246368;JUN:-0.453464279361;POU5F1:-0.464088805795;MYFfamily:-0.478449773052;ATF2:-0.48427094641;HMX1:-0.503809799172;GLI1..3:-0.511616111107;HMGA1,2:-0.513556609378;NKX2-3_NKX2-5:-0.55381011164;PPARG:-0.55522987306;TAL1_TCF{3,4,12}:-0.564708684498;VSX1,2:-0.598253854338;ATF4:-0.598906626368;PAX5:-0.602255131901;SRF:-0.607039679235;NFATC1..3:-0.623276774826;ZNF238:-0.637836375821;TP53:-0.639756701958;CEBPA,B_DDIT3:-0.660180397392;LHX3,4:-0.684338089827;HBP1_HMGB_SSRP1_UBTF:-0.690799403506;ZNF148:-0.708758316793;SOX2:-0.709786260608;TFAP4:-0.713046971316;BACH2:-0.723506398494;ONECUT1,2:-0.732823108158;XCPE1{core}:-0.757733705208;EP300:-0.781434718167;FOS_FOS{B,L1}_JUN{B,D}:-0.786548618189;KLF4:-0.789767250262;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.813140357239;MZF1:-0.817580918437;REST:-0.826017958396;ZFP161:-0.85681167996;TFCP2:-0.859555365556;NFE2:-0.868702271784;PRDM1:-0.87229624853;ADNP_IRX_SIX_ZHX:-0.875451534963;FOSL2:-0.901985302533;ESR1:-0.918090672125;MEF2{A,B,C,D}:-0.922455122612;ALX4:-0.952591133159;GATA4:-0.991583457751;FOXL1:-0.994118127058;ZBTB6:-1.00384934711;MTE{core}:-1.0202975266;EGR1..3:-1.02305580507;EBF1:-1.02811075954;NFE2L2:-1.0468973784;MED-1{core}:-1.0529237271;HOX{A4,D4}:-1.06084202741;RFX1:-1.0659979143;ZNF423:-1.08654348235;GZF1:-1.09993823182;HLF:-1.10240200401;POU6F1:-1.10435122955;RBPJ:-1.12357410837;NHLH1,2:-1.15455665075;MYBL2:-1.17522916921;MTF1:-1.20039135168;PAX1,9:-1.20231610009;NANOG:-1.20615477456;SOX17:-1.2066693304;TEF:-1.21578937175;HIC1:-1.22139073672;bHLH_family:-1.22556944046;HIF1A:-1.28050359024;MAZ:-1.28357833232;GFI1B:-1.31821823594;TFAP2B:-1.3256739098;HOX{A5,B5}:-1.33063525694;MAFB:-1.34112454738;HSF1,2:-1.34658156121;GTF2I:-1.36768639024;GTF2A1,2:-1.37503220836;NFIX:-1.40837829442;TBP:-1.43601700982;NKX3-2:-1.46964534205;ZIC1..3:-1.48420554546;PATZ1:-1.49128640191;TEAD1:-1.59779680547;EN1,2:-1.6445482097;TFAP2{A,C}:-1.69185189905;TBX4,5:-1.70626905754;IKZF1:-1.71312242476;RXR{A,B,G}:-1.78749843524;SP1:-1.80403464347;ESRRA:-1.88170398626;XBP1:-1.95923722161;TLX1..3_NFIC{dimer}:-2.14489914786
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11913-125G5;search_select_hide=table117:FF:11913-125G5
 }}

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FF:11913-125G5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:29, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0