FF:12245-129H4: Difference between revisions

Latest revision as of 18:36, 4 June 2020

Name:	Eosinophils, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12548
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	eosinophil
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	3H100-90-5
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005123

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12548		CAGE		DRX008076		DRR008948

Accession ID Hg19

Library id		BAM		CTSS
CNhs12548		DRZ000373		DRZ001758

Accession ID Hg38

Library id		BAM		CTSS
CNhs12548		DRZ011723		DRZ013108

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.216
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.365
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.471
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.365
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.365
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.365
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.365
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	1.168
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.959
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.573
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.365
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	1.344
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.214
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.561
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.834
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	1.378
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.718
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	1.049
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.639
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.365
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.561
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.581
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.681
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.739
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.365
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.561
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	1.13
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	1.19
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.816
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.95
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12548

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.52665e-12
MA0003.1	MA0003.1	0.191
MA0004.1	MA0004.1	0.858
MA0006.1	MA0006.1	0.53
MA0007.1	MA0007.1	0.454
MA0009.1	MA0009.1	0.0783
MA0014.1	MA0014.1	0.954
MA0017.1	MA0017.1	0.0863
MA0018.2	MA0018.2	2.90801e-7
MA0019.1	MA0019.1	0.915
MA0024.1	MA0024.1	0.00351
MA0025.1	MA0025.1	5.62352e-7
MA0027.1	MA0027.1	0.79
MA0028.1	MA0028.1	0.928
MA0029.1	MA0029.1	0.822
MA0030.1	MA0030.1	1.41453e-5
MA0031.1	MA0031.1	7.10233e-4
MA0035.2	MA0035.2	0.919
MA0038.1	MA0038.1	0.2
MA0039.2	MA0039.2	0.781
MA0040.1	MA0040.1	0.00296
MA0041.1	MA0041.1	0.258
MA0042.1	MA0042.1	0.0369
MA0043.1	MA0043.1	1.17357e-15
MA0046.1	MA0046.1	0.136
MA0047.2	MA0047.2	0.0355
MA0048.1	MA0048.1	0.706
MA0050.1	MA0050.1	4.0852e-4
MA0051.1	MA0051.1	0.08
MA0052.1	MA0052.1	0.797
MA0055.1	MA0055.1	0.233
MA0057.1	MA0057.1	0.225
MA0058.1	MA0058.1	0.599
MA0059.1	MA0059.1	0.915
MA0060.1	MA0060.1	2.08368e-4
MA0061.1	MA0061.1	1.25687e-16
MA0062.2	MA0062.2	3.49697e-5
MA0065.2	MA0065.2	0.0384
MA0066.1	MA0066.1	0.0387
MA0067.1	MA0067.1	2.86593e-5
MA0068.1	MA0068.1	0.468
MA0069.1	MA0069.1	0.322
MA0070.1	MA0070.1	0.0515
MA0071.1	MA0071.1	0.13
MA0072.1	MA0072.1	0.682
MA0073.1	MA0073.1	0.122
MA0074.1	MA0074.1	0.27
MA0076.1	MA0076.1	0.524
MA0077.1	MA0077.1	0.375
MA0078.1	MA0078.1	0.454
MA0079.2	MA0079.2	0.866
MA0080.2	MA0080.2	1.62291e-15
MA0081.1	MA0081.1	2.62295e-5
MA0083.1	MA0083.1	0.0546
MA0084.1	MA0084.1	0.491
MA0087.1	MA0087.1	0.601
MA0088.1	MA0088.1	0.162
MA0090.1	MA0090.1	0.131
MA0091.1	MA0091.1	0.94
MA0092.1	MA0092.1	0.901
MA0093.1	MA0093.1	0.916
MA0099.2	MA0099.2	3.35817e-16
MA0100.1	MA0100.1	0.941
MA0101.1	MA0101.1	5.39674e-18
MA0102.2	MA0102.2	1.95285e-13
MA0103.1	MA0103.1	0.793
MA0104.2	MA0104.2	0.655
MA0105.1	MA0105.1	2.94427e-14
MA0106.1	MA0106.1	0.218
MA0107.1	MA0107.1	5.64406e-24
MA0108.2	MA0108.2	0.0765
MA0111.1	MA0111.1	0.828
MA0112.2	MA0112.2	0.00459
MA0113.1	MA0113.1	0.722
MA0114.1	MA0114.1	0.427
MA0115.1	MA0115.1	0.738
MA0116.1	MA0116.1	0.00293
MA0117.1	MA0117.1	0.0141
MA0119.1	MA0119.1	0.89
MA0122.1	MA0122.1	0.391
MA0124.1	MA0124.1	0.764
MA0125.1	MA0125.1	0.169
MA0131.1	MA0131.1	0.82
MA0135.1	MA0135.1	0.0504
MA0136.1	MA0136.1	4.61315e-20
MA0137.2	MA0137.2	0.049
MA0138.2	MA0138.2	0.212
MA0139.1	MA0139.1	0.976
MA0140.1	MA0140.1	0.629
MA0141.1	MA0141.1	0.0455
MA0142.1	MA0142.1	0.676
MA0143.1	MA0143.1	0.867
MA0144.1	MA0144.1	0.0481
MA0145.1	MA0145.1	0.224
MA0146.1	MA0146.1	0.156
MA0147.1	MA0147.1	0.51
MA0148.1	MA0148.1	0.156
MA0149.1	MA0149.1	0.84
MA0150.1	MA0150.1	4.34929e-14
MA0152.1	MA0152.1	0.0885
MA0153.1	MA0153.1	0.11
MA0154.1	MA0154.1	6.40618e-4
MA0155.1	MA0155.1	0.426
MA0156.1	MA0156.1	1.35154e-14
MA0157.1	MA0157.1	0.0246
MA0159.1	MA0159.1	0.0253
MA0160.1	MA0160.1	0.00713
MA0162.1	MA0162.1	0.924
MA0163.1	MA0163.1	0.00355
MA0164.1	MA0164.1	0.936
MA0258.1	MA0258.1	0.0617
MA0259.1	MA0259.1	0.318

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12548

Novel motif	Logo	P-value
1	1	0.245
10	10	0.0925
100	100	0.476
101	101	0.86
102	102	0.945
103	103	0.286
104	104	0.533
105	105	0.252
106	106	4.6952e-4
107	107	0.748
108	108	0.43
109	109	0.203
11	11	0.262
110	110	0.596
111	111	0.383
112	112	0.393
113	113	0.515
114	114	0.0523
115	115	0.375
116	116	0.633
117	117	0.0208
118	118	0.112
119	119	0.443
12	12	0.264
120	120	0.568
121	121	0.836
122	122	0.493
123	123	0.464
124	124	0.867
125	125	0.166
126	126	0.0926
127	127	0.458
128	128	0.0309
129	129	0.619
13	13	0.286
130	130	0.889
131	131	0.575
132	132	0.0785
133	133	0.949
134	134	0.583
135	135	0.199
136	136	0.697
137	137	7.04679e-4
138	138	0.181
139	139	0.0955
14	14	0.347
140	140	0.639
141	141	0.286
142	142	0.594
143	143	0.0185
144	144	0.95
145	145	0.779
146	146	0.413
147	147	0.656
148	148	0.169
149	149	0.643
15	15	0.123
150	150	0.732
151	151	0.254
152	152	0.146
153	153	0.781
154	154	1
155	155	0.145
156	156	0.899
157	157	0.976
158	158	0.00467
159	159	0.412
16	16	0.582
160	160	0.926
161	161	0.734
162	162	0.0582
163	163	0.351
164	164	0.212
165	165	0.301
166	166	0.722
167	167	0.817
168	168	0.182
169	169	0.0863
17	17	0.303
18	18	0.174
19	19	0.541
2	2	0.93
20	20	0.539
21	21	0.964
22	22	0.162
23	23	0.0206
24	24	0.379
25	25	0.314
26	26	0.156
27	27	0.894
28	28	0.351
29	29	0.386
3	3	0.324
30	30	0.666
31	31	0.897
32	32	0.307
33	33	0.333
34	34	0.569
35	35	0.139
36	36	0.228
37	37	0.103
38	38	0.513
39	39	0.795
4	4	0.824
40	40	0.311
41	41	0.00333
42	42	0.581
43	43	0.0625
44	44	0.93
45	45	0.42
46	46	0.386
47	47	0.641
48	48	0.734
49	49	0.133
5	5	0.142
50	50	0.956
51	51	0.398
52	52	0.298
53	53	0.389
54	54	0.345
55	55	0.949
56	56	0.792
57	57	0.532
58	58	0.223
59	59	0.0816
6	6	0.842
60	60	0.0408
61	61	0.299
62	62	0.0934
63	63	0.677
64	64	0.599
65	65	0.233
66	66	0.291
67	67	0.491
68	68	0.339
69	69	0.519
7	7	0.26
70	70	0.22
71	71	0.0425
72	72	0.452
73	73	0.191
74	74	0.0944
75	75	0.256
76	76	0.191
77	77	0.665
78	78	0.245
79	79	0.922
8	8	0.653
80	80	0.0284
81	81	0.428
82	82	0.106
83	83	0.132
84	84	0.439
85	85	0.0746
86	86	0.021
87	87	0.319
88	88	0.696
89	89	0.127
9	9	0.218
90	90	0.316
91	91	0.486
92	92	0.398
93	93	0.064
94	94	0.0661
95	95	0.208
96	96	0.503
97	97	0.928
98	98	0.122
99	99	0.0134

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12548

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000249 human eosinophil- heparinase treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000771 (eosinophil)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000054 (human eosinophil sample)
0000249 (human eosinophil- heparinase treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007969
+|DRA_sample_Accession=CAGE@SAMD00005123
-|accession_numbers=CAGE;DRX008076;DRR008948;DRZ000373;DRZ001758
+|accession_numbers=CAGE;DRX008076;DRR008948;DRZ000373;DRZ001758;DRZ011723;DRZ013108
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000771
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.57!3721.48!PLEK;;chr11:47400078..47400106,-!p1@SPI1!3.05!1125.40!SPI1;;chr2:70142232..70142251,+!p1@MXD1!2.52!1732.91!MXD1;;chr10:35484053..35484076,+!p1@CREM!2.43!648.36!CREM;;chr19:45252008..45252024,+!p2@BCL3!2.32!652.31!BCL3;;chr11:47400062..47400077,-!p2@SPI1!2.32!208.21!SPI1;;chr8:22550982..22550999,-!p1@EGR3!2.28!513.94!EGR3;;chr14:35873947..35873965,-!p1@NFKBIA!2.27!10769.10!NFKBIA;;chr5:142782823..142782854,-!p3@NR3C1!2.21!225.34!NR3C1;;chr11:47399947..47399961,-!p3@SPI1!2.21!160.77!SPI1;;chr14:35872962..35873025,-!p3@NFKBIA!2.19!372.94!NFKBIA;;chr9:102584262..102584276,+!p1@NR4A3!2.18!326.82!NR4A3;;chr10:104154415..104154434,+!p5@NFKB2!2.17!146.28!NFKB2;;chr2:157189180..157189290,-!p1@NR4A2!2.13!664.17!NR4A2;;chr19:36391434..36391450,-!p1@NFKBID!2.13!254.34!NFKBID;;chr11:47400032..47400043,-!p5@SPI1!2.11!129.14!SPI1;;chr10:104155659..104155676,+!p4@NFKB2!2.10!152.87!NFKB2;;chr6:44233252..44233296,-!p1@NFKBIE!2.05!1029.21!NFKBIE;;chr6:12011943..12012015,+!p2@HIVEP1!2.04!334.72!HIVEP1;;chr19:45251395..45251432,+!p8@BCL3!2.04!108.06!BCL3;;chr10:104155480..104155534,+!p2@NFKB2!2.03!656.27!NFKB2;;chr10:104154246..104154347,+!p3@NFKB2!2.02!595.65!NFKB2;;chr16:31885093..31885165,+!p1@ZNF267!2.01!1453.54!ZNF267;;chr6:144385698..144385742,-!p2@PLAGL1!2.01!121.24!PLAGL1;;chr2:231090471..231090504,+!p2@SP140!2.01!101.47!SP140;;chr3:39195075..39195088,-!p1@CSRNP1!2.00!587.74!CSRNP1;;chr11:47399996..47400014,-!p4@SPI1!1.99!96.20!SPI1;;chr3:39195037..39195069,-!p2@CSRNP1!1.96!525.80!CSRNP1;;chr19:45250948..45250998,+!p3@BCL3!1.96!217.44!BCL3;;chr10:35484090..35484104,+!p6@CREM!1.96!90.93!CREM;;chr3:101568349..101568365,+!p1@NFKBIZ!1.94!4132.63!NFKBIZ;;chr2:68592394..68592405,+!p2@PLEK!1.94!85.66!PLEK;;chr14:75745523..75745537,+!p1@FOS!1.92!9247.03!FOS;;chr7:50344289..50344323,+!p1@IKZF1!1.92!81.70!IKZF1;;chr17:38498594..38498661,+!p2@RARA!1.91!255.65!RARA;;chr12:72056800..72056834,+!p1@THAP2!1.90!104.11!THAP2;;chr9:102584241..102584261,+!p4@NR4A3!1.89!117.28!NR4A3;;chr7:28725715..28725727,+!p3@CREB5!1.88!88.29!CREB5;;chr1:151030536..151030549,+!p8@MLLT11!1.88!75.11!MLLT11;;chr11:47400045..47400060,-!p6@SPI1!1.87!72.48!SPI1;;chr1:156470515..156470542,-!p2@MEF2D!1.86!357.12!MEF2D;;chr4:83822199..83822239,+!p2@THAP9!1.86!84.34!THAP9;;chr5:131826457..131826514,-!p1@IRF1!1.85!2552.59!IRF1;;chr19:45971246..45971265,+!p1@FOSB!1.85!1211.06!FOSB;;chr17:38497662..38497713,+!p4@RARA!1.85!80.39!RARA;;chr2:70142189..70142223,+!p2@MXD1!1.82!440.15!MXD1;;chr14:35872926..35872951,-!p4@NFKBIA!1.82!89.61!NFKBIA;;chr14:35872453..35872485,-!p2@NFKBIA!1.81!151.55!NFKBIA;;chr19:12902289..12902307,+!p1@JUNB!1.79!13080.52!JUNB;;chr4:83822246..83822277,+!p5@THAP9!1.79!60.62!THAP9;;chr9:102584128..102584144,+!p3@NR4A3!1.78!109.38!NR4A3;;chr2:231084639..231084654,-!p2@SP110!1.78!96.20!SP110;;chr2:97202480..97202499,+!p1@ARID5A!1.77!548.21!ARID5A;;chr4:106068026..106068084,+!p1@TET2!1.77!492.86!TET2;;chr2:61108808..61108821,+!p3@REL!1.77!72.48!REL;;chr1:37940170..37940190,+!p1@ZC3H12A!1.76!657.58!ZC3H12A;;chr8:123793988..123794016,+!p1@ZHX2!1.76!97.52!ZHX2;;chr10:35416142..35416169,+!p3@CREM!1.75!142.32!CREM;;chr20:56195474..56195506,-!p1@ZBP1!1.75!55.35!ZBP1;;chr2:61108695..61108753,+!p1@REL!1.74!350.54!REL;;chr2:231090433..231090469,+!p1@SP140!1.74!54.03!SP140;;chr17:38498402..38498445,+!p3@RARA!1.73!183.17!RARA;;chr2:208031943..208031978,-!p5@KLF7!1.71!65.89!KLF7;;chr2:208394817..208394834,+!p3@CREB1!1.69!187.13!CREB1;;chr9:88969339..88969422,-!p2@ZCCHC6!1.68!349.22!ZCCHC6;;chr7:149470641..149470694,-!p1@ZNF467!1.68!202.94!ZNF467;;chr19:47616992..47617011,-!p4@ZC3H4!1.67!94.88!ZC3H4;;chr17:40429090..40429125,-!p3@STAT5B!1.67!46.12!STAT5B;;chr10:51572408..51572454,+!p3@NCOA4!1.66!246.43!NCOA4;;chr2:208031542..208031595,-!p2@KLF7!1.65!295.19!KLF7;;chr4:83822343..83822355,+!p9@THAP9!1.65!43.49!THAP9;;chr4:140098339..140098392,-!p1@ELF2!1.64!333.40!ELF2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.64!59.30!NFKBIZ;;chr19:16435625..16435682,+!p1@KLF2!1.63!1251.91!KLF2;;chr7:28725740..28725778,+!p1@CREB5!1.63!351.85!CREB5;;chr3:187463179..187463201,-!p2@BCL6!1.63!163.41!BCL6;;chr7:64126535..64126559,+!p2@ZNF107!1.63!86.98!ZNF107;;chr6:106534192..106534224,+!p1@PRDM1!1.62!110.70!PRDM1;;chr6:106534230..106534254,+!p2@PRDM1!1.62!100.15!PRDM1;;chr1:156470494..156470505,-!p3@MEF2D!1.62!57.98!MEF2D;;chr12:72056773..72056796,+!p3@THAP2!1.62!52.71!THAP2;;chr7:99680193..99680204,-!p2@ZNF3!1.62!40.85!ZNF3;;chr2:61108771..61108789,+!p4@REL!1.60!57.98!REL;;chr3:39195139..39195150,-!p3@CSRNP1!1.60!48.76!CSRNP1;;chr19:45251943..45252006,+!p1@BCL3!1.59!939.59!BCL3;;chr6:12012170..12012245,+!p1@HIVEP1!1.59!183.17!HIVEP1;;chr4:103423079..103423112,+!p4@NFKB1!1.58!36.90!NFKB1;;chr9:88969303..88969335,-!p1@ZCCHC6!1.57!321.54!ZCCHC6;;chr7:106809470..106809481,+!p2@HBP1!1.57!50.08!HBP1;;chr4:38665769..38665801,+!p2@KLF3!1.55!300.46!KLF3;;chr12:57914286..57914304,-!p1@DDIT3!1.54!1164.94!DDIT3;;chrX:129244454..129244488,-!p1@ELF4!1.53!229.30!ELF4;;chr2:145275162..145275202,-!p2@ZEB2!1.53!185.81!ZEB2;;chr9:117150254..117150271,-!p1@AKNA!1.53!86.98!AKNA;;chr20:48807171..48807234,+!p4@CEBPB!1.53!71.16!CEBPB;;chr14:75746340..75746368,+!p3@FOS!1.53!32.95!FOS;;chr19:21688458..21688467,+!p3@ZNF429!1.53!32.95!ZNF429;;chr9:137217986..137218049,+!p3@RXRA!1.52!89.61!RXRA;;chr20:48807351..48807384,+!p1@CEBPB!1.51!3027.00!CEBPB;;chr1:25256756..25256774,-!p1@RUNX3!1.51!57.98!RUNX3;;chr1:8484007..8484061,-!p13@RERE!1.51!39.53!RERE;;chr4:103422499..103422632,+!p1@NFKB1!1.49!598.28!NFKB1;;chr12:48298785..48298828,-!p1@VDR!1.49!151.55!VDR;;chr2:70314240..70314256,+!p4@PCBP1!1.48!59.30!PCBP1;;chr5:176735063..176735088,-!p2@MXD3!1.48!28.99!MXD3;;chr9:32550965..32551031,-!p4@TOPORS!1.47!43.49!TOPORS;;chr2:28615716..28615733,+!p1@FOSL2!1.46!1246.64!FOSL2;;chr13:41593425..41593480,-!p1@ELF1!1.46!170.00!ELF1;;chrX:106960180..106960197,-!p2@TSC22D3!1.46!102.79!TSC22D3;;chr6:15246200..15246214,+!p2@JARID2!1.46!75.11!JARID2;;chr7:44924939..44924993,-!p2@PURB!1.46!52.71!PURB;;chrX:129244430..129244442,-!p5@ELF4!1.46!27.67!ELF4;;chr19:36389839..36389857,-!p4@NFKBID!1.46!27.67!NFKBID;;chr6:143266297..143266356,-!p1@HIVEP2!1.45!126.51!HIVEP2;;chr1:247095162..247095173,-!p3@AHCTF1!1.45!40.85!AHCTF1;;chr9:127533519..127533573,-!p2@NR6A1!1.44!31.63!NR6A1;;chr6:44355499..44355514,+!p3@CDC5L!1.44!28.99!CDC5L;;chr9:102584278..102584285,+!p5@NR4A3!1.44!26.36!NR4A3;;chr19:45257891..45257908,+!p17@BCL3!1.44!26.36!BCL3;;chr11:47399920..47399931,-!p7@SPI1!1.44!26.36!SPI1;;chr16:3313791..3313834,+!p2@ZNF263!1.43!56.67!ZNF263;;chr7:50343634..50343717,+!p2@IKZF1!1.42!25.04!IKZF1;;chr22:38597987..38598021,+!p2@MAFF!1.41!146.28!MAFF;;chr12:72056749..72056767,+!p6@THAP2!1.41!27.67!THAP2;;chr2:231084659..231084721,-!p1@SP110!1.40!544.25!SP110;;chr3:170075436..170075520,+!p1@SKIL!1.39!491.54!SKIL;;chr21:30671690..30671762,+!p2@BACH1!1.39!79.07!BACH1;;chr3:150126904..150126958,+!p7@TSC22D2!1.39!40.85!TSC22D2;;chr3:18466660..18466676,-!p5@SATB1!1.39!27.67!SATB1;;chr2:157198916..157198978,-!p2@NR4A2!1.38!79.07!NR4A2;;chr6:15249128..15249177,+!p4@JARID2!1.38!40.85!JARID2;;chr8:71316021..71316068,-!p1@NCOA2!1.37!201.62!NCOA2;;chr9:94186085..94186096,-!p3@NFIL3!1.37!36.90!NFIL3;;chr5:172483414..172483425,+!p3@C5orf41!1.37!22.40!CREBRF;;chr1:154975110..154975149,+!p2@ZBTB7B!1.36!46.12!ZBTB7B;;chr11:13299319..13299424,+!p1@ARNTL!1.35!206.90!ARNTL;;chr9:102584159..102584174,+!p2@NR4A3!1.35!38.22!NR4A3;;chr6:15246261..15246312,+!p1@JARID2!1.34!483.63!JARID2;;chr21:30671235..30671253,+!p1@BACH1!1.34!255.65!BACH1;;chr14:62162258..62162269,+!p2@HIF1A!1.34!196.35!HIF1A;;chr5:172483347..172483407,+!p1@C5orf41!1.34!152.87!CREBRF;;chr12:11802753..11802834,+!p2@ETV6!1.34!100.15!ETV6;;chr14:64971288..64971316,-!p2@ZBTB25!1.34!63.25!ZBTB25;;chr2:70167296..70167306,+!p3@MXD1!1.34!31.63!MXD1;;chrY:2803415..2803468,+!p1@ZFY!1.34!21.08!ZFY;;chr17:38497715..38497734,+!p8@RARA!1.34!21.08!RARA;;chr4:83821967..83821998,+!p3@THAP9!1.33!25.04!THAP9;;chr14:62162285..62162296,+!p3@HIF1A!1.32!100.15!HIF1A;;chr21:47063625..47063658,+!p1@PCBP3!1.32!84.34!PCBP3;;chr14:69262789..69262822,-!p2@ZFP36L1!1.32!51.39!ZFP36L1;;chr14:35872494..35872511,-!p5@NFKBIA!1.32!26.36!NFKBIA;;chr7:50344251..50344288,+!p3@IKZF1!1.32!19.77!IKZF1;;chr3:113415441..113415500,-!p1@KIAA2018!1.31!102.79!KIAA2018;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.31!31.63!PCBP2;;chr20:48807430..48807439,+!p8@CEBPB!1.31!28.99!CEBPB;;chr3:5020939..5020952,+!p2@BHLHE40!1.30!57.98!BHLHE40;;chr12:48298765..48298783,-!p2@VDR!1.30!39.53!VDR;;chr14:69261310..69261326,-!p5@ZFP36L1!1.30!25.04!ZFP36L1;;chrX:106960285..106960299,-!p1@TSC22D3!1.29!486.27!TSC22D3;;chr1:247095194..247095235,-!p1@AHCTF1!1.29!189.76!AHCTF1;;chr14:58765217..58765301,+!p1@ARID4A!1.29!163.41!ARID4A;;chr19:12075844..12075880,+!p3@ZNF763!1.29!31.63!ZNF763;;chr12:54694758..54694805,-!p1@NFE2!1.29!22.40!NFE2;;chr12:57917037..57917052,+!p9@MBD6!1.29!18.45!MBD6;;chr14:75988831..75988847,+!p2@BATF!1.29!18.45!BATF;;chr2:61108878..61108891,+!p5@REL!1.29!18.45!REL;;chr8:123794038..123794056,+!p5@ZHX2!1.29!18.45!ZHX2;;chr17:40440481..40440550,+!p1@STAT5A!1.28!127.83!STAT5A;;chr1:153895251..153895342,-!p2@GATAD2B!1.28!65.89!GATAD2B;;chr4:185395191..185395226,-!p4@IRF2!1.28!25.04!IRF2;;chr10:31288398..31288455,-!p2@ZNF438!1.28!21.08!ZNF438;;chr14:62162224..62162254,+!p1@HIF1A!1.27!2478.79!HIF1A;;chr2:174828545..174828644,-!p1@SP3!1.27!262.24!SP3;;chr20:48807875..48807982,+!p2@CEBPB!1.26!368.99!CEBPB;;chr2:145277640..145277771,-!p1@ZEB2!1.26!225.34!ZEB2;;chr21:40177892..40177903,+!p2@ETS2!1.26!68.53!ETS2;;chr21:30671189..30671207,+!p4@BACH1!1.26!59.30!BACH1;;chr20:48807456..48807475,+!p3@CEBPB!1.26!32.95!CEBPB;;chr12:54694653..54694672,-!p2@NFE2!1.26!17.13!NFE2;;chr6:15246741..15246765,+!p9@JARID2!1.26!17.13!JARID2;;chr16:88636875..88636886,+!p3@ZC3H18!1.25!23.72!ZC3H18;;chr4:185395633..185395651,-!p2@IRF2!1.24!26.36!IRF2;;chr2:43453734..43453751,-!p1@ZFP36L2!1.23!1649.8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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000094;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000771;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg38.nobarcode.ctss.bed.gz
 |id=FF:12245-129H4
 |is_a=EFO:0002091;;FF:0000249
 |is_obsolete=
 |library_id=CNhs12548
+|library_id_phase_based=2:CNhs12548
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12245
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12245
 |name=Eosinophils, donor2
 |namespace=FANTOM5
@@ Line 49: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12548,LSID920,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12245-129H4;search_select_hide=table117:FF:12245-129H4
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FF:12245-129H4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:36, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0