FF:12652-134H6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005824 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008581;DRR009453;DRZ000878;DRZ002263;DRZ012228;DRZ013613 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0000350,FF:0000344,FF:0000340,FF:0000556 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor=biol_rep1 (LK31) | |||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.98!94.94!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.75!54.77!SIM2;;chr1:170633348..170633399,+!p2@PRRX1!1.53!44.55!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.40!216.90!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.39!23.37!FOXG1;;chr14:29236269..29236285,+!p3@FOXG1!1.37!22.64!FOXG1;;chr1:170632285..170632309,+!p1@PRRX1!1.34!23.37!PRRX1;;chr14:29234581..29234601,+!p2@FOXG1!1.33!20.45!FOXG1;;chr12:66218598..66218645,+!p2@HMGA2!1.24!75.22!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!1.24!43.09!HIC1;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.53!PRRX1;;chr8:11561684..11561751,+!p1@GATA4!1.19!14.61!GATA4;;chr12:66218923..66218934,+!p14@HMGA2!1.17!13.88!HMGA2;;chr11:34642612..34642646,+!p1@EHF!1.10!11.68!EHF;;chr11:46299199..46299233,+!p1@CREB3L1!1.08!57.69!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!1.08!10.95!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!1.08!10.95!PRRX1;;chr10:94449703..94449718,+!p1@HHEX!1.07!41.63!HHEX;;chr3:141087393..141087426,+!p3@ZBTB38!1.05!41.63!ZBTB38;;chr12:66218255..66218304,+!p3@HMGA2!0.99!24.10!HMGA2;;chr6:45296048..45296082,+!p1@RUNX2!0.99!10.22!RUNX2;;chr2:19558373..19558392,-!p1@OSR1!0.98!24.10!OSR1;;chr1:170632959..170632987,+!p4@PRRX1!0.98!9.49!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.96!37.98!FOXD1;;chr17:46621937..46621966,-!p2@HOXB2!0.96!22.64!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.96!9.49!BNC1;;chr17:46622205..46622218,-!p3@HOXB2!0.96!9.49!HOXB2;;chr8:55370720..55370733,+!p2@SOX17!0.96!8.03!SOX17;;chr11:61520075..61520136,+!p1@C11orf9!0.92!16.07!C11orf9;;chr1:170632723..170632739,+!p8@PRRX1!0.92!7.30!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!0.91!12.42!CREB3L1;;chr3:141105705..141105770,+!p4@ZBTB38!0.91!8.76!ZBTB38;;chr19:42636586..42636607,-!p1@POU2F2!0.90!19.72!POU2F2;;chr16:86544113..86544145,+!p1@FOXF1!0.90!8.76!FOXF1;;chr1:151032860..151032918,+!p1@MLLT11!0.89!84.72!MLLT11;;chr17:46622070..46622109,-!p1@HOXB2!0.88!15.34!HOXB2;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.57!TBX20;;chr1:170632115..170632136,+!p9@PRRX1!0.88!6.57!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.88!6.57!SIM2;;chr15:96876966..96877017,+!p12@NR2F2!0.87!9.49!NR2F2;;chr2:239756739..239756755,+!p2@TWIST2!0.86!10.95!TWIST2;;chr3:157823517..157823562,-!p1@SHOX2!0.85!6.57!SHOX2;;chr17:46688334..46688385,-!p1@HOXB7!0.84!8.76!HOXB7;;chr12:66218212..66218244,+!p5@HMGA2!0.84!8.76!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!0.84!5.84!HOXB6;;chr2:102091144..102091183,-!p2@RFX8!0.84!5.84!RFX8;;chr1:170633058..170633084,+!p5@PRRX1!0.84!5.84!PRRX1;;chr15:96869255..96869291,+!p6@NR2F2!0.83!10.95!NR2F2;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.49!MLLT11;;chr2:239756671..239756732,+!p1@TWIST2!0.80!18.26!TWIST2;;chr11:65686802..65686818,+!p6@DRAP1!0.79!9.49!DRAP1;;chr17:46622440..46622477,-!p5@HOXB2!0.79!5.84!HOXB2;;chr21:38071462..38071474,+!p3@SIM2!0.79!5.11!SIM2;;chr5:139492456..139492489,+!p7@PURA!0.79!5.11!PURA;;chr6:134210243..134210257,+!p1@TCF21!0.79!5.11!TCF21;;chr1:37940170..37940190,+!p1@ZC3H12A!0.75!63.54!ZC3H12A;;chr17:41622765..41622821,-!p2@ETV4!0.75!7.30!ETV4;;chr11:65687362..65687436,+!p3@DRAP1!0.74!22.64!DRAP1;;chr20:42543441..42543497,+!p1@TOX2!0.73!21.91!TOX2;;chr1:170632051..170632081,+!p16@PRRX1!0.73!4.38!PRRX1;;chr11:46333934..46333963,+!p5@CREB3L1!0.73!4.38!CREB3L1;;chr12:66357214..66357233,+!p13@HMGA2!0.73!4.38!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.73!4.38!HMGA2;;chr17:46655672..46655697,-!p3@HOXB4!0.73!4.38!HOXB4;;chr7:27169801..27169844,-!p2@HOXA4!0.73!4.38!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.73!4.38!HOXA5;;chrY:21906594..21906622,-!p1@KDM5D!0.73!4.38!KDM5D;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!343.98!TAX1BP3;;chr11:128563948..128564003,+!p1@FLI1!0.72!57.69!FLI1;;chr5:72743793..72743855,-!p4@FOXD1!0.72!5.11!FOXD1;;chr6:43140149..43140177,+!p8@SRF!0.70!4.38!SRF;;chr17:1958388..1958404,+!p1@HIC1!0.69!28.48!HIC1;;chr12:66218183..66218209,+!p4@HMGA2!0.69!8.03!HMGA2;;chr1:221052776..221052799,+!p1@HLX!0.68!7.30!HLX;;chr17:41623009..41623053,-!p4@ETV4!0.68!6.57!ETV4;;chr8:72756267..72756296,-!p4@MSC!0.68!5.84!MSC;;chr8:72756213..72756243,-!p5@MSC!0.68!5.11!MSC;;chr5:72744445..72744466,-!p2@FOXD1!0.67!6.57!FOXD1;;chr6:21597600..21597664,+!p3@SOX4!0.67!6.57!SOX4;;chr12:66218573..66218596,+!p7@HMGA2!0.67!5.84!HMGA2;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.65!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!0.67!3.65!HOXA3;;chr7:27183291..27183324,-!p1@HOXA5!0.67!3.65!HOXA5;;chr16:30406423..30406447,+!p4@ZNF48!0.67!3.65!ZNF48;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.65!ZNF668;;chr17:46655578..46655589,-!p4@HOXB4!0.67!3.65!HOXB4;;chr17:46659728..46659749,-!p3@HOXB3!0.67!3.65!HOXB3;;chr19:9609272..9609297,-!p1@ZNF560!0.67!3.65!ZNF560;;chr1:170632477..170632506,+!p6@PRRX1!0.67!3.65!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.67!3.65!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.67!3.65!PRRX1;;chr21:38071488..38071502,+!p4@SIM2!0.67!3.65!SIM2;;chr7:26191809..26191890,+!p1@NFE2L3!0.66!20.45!NFE2L3;;chr2:66662281..66662308,+!p1@MEIS1!0.66!13.88!MEIS1;;chr15:96869222..96869251,+!p18@NR2F2!0.66!4.38!NR2F2;;chr6:34204921..34204939,+!p3@HMGA1!0.65!122.69!HMGA1;;chr14:62162258..62162269,+!p2@HIF1A!0.65!38.71!HIF1A;;chr1:221053049..221053075,+!p3@HLX!0.65!6.57!HLX;;chr20:50721803..50721857,-!p2@ZFP64!0.65!5.84!ZFP64;;chr19:13134457..13134462,+!p5@NFIX!0.64!6.57!NFIX;;chr5:72744562..72744573,-!p3@FOXD1!0.64!4.38!FOXD1;;chr11:65686732..65686756,+!p2@DRAP1!0.63!16.07!DRAP1;;chr12:125002739..125002756,-!p6@NCOR2!0.63!5.11!NCOR2;;chr5:321810..321877,+!p1@AHRR!0.62!11.68!AHRR;;chr18:53068911..53068935,-!p4@TCF4!0.62!3.65!TCF4;;chr6:34205372..34205412,+!p5@HMGA1!0.61!18.26!HMGA1;;chr17:46675420..46675465,-!p3@HOXB6!0.61!3.65!HOXB6;;chr9:35732647..35732678,+!p2@CREB3!0.60!19.72!CREB3;;chr4:4861385..4861398,+!p1@MSX1!0.60!10.22!MSX1;;chr3:52001396..52001425,-!p4@PCBP4!0.60!5.84!PCBP4;;chr1:221052840..221052875,+!p4@HLX!0.60!3.65!HLX;;chr17:46622229..46622257,-!p6@HOXB2!0.60!3.65!HOXB2;;chr20:42543506..42543549,+!p2@TOX2!0.59!8.03!TOX2;;chr8:72756063..72756125,-!p1@MSC!0.59!6.57!MSC;;chr7:27142290..27142310,-!p1@HOXA2!0.59!2.92!HOXA2;;chr8:55370693..55370704,+!p4@SOX17!0.59!2.92!SOX17;;chr1:170632028..170632043,+!p20@PRRX1!0.59!2.92!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.59!2.92!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.59!2.92!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.59!2.92!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.59!2.92!EBF3;;chr14:29236169..29236216,+!p6@FOXG1!0.59!2.92!FOXG1;;chr2:102091566..102091581,-!p1@RFX8!0.59!2.92!RFX8;;chr2:66662510..66662521,+!p6@MEIS1!0.59!2.92!MEIS1;;chr16:86612320..86612394,+!p1@FOXL1!0.59!2.92!FOXL1;;chr17:41622731..41622764,-!p5@ETV4!0.59!2.92!ETV4;;chr17:46621146..46621180,-!p10@HOXB2!0.59!2.92!HOXB2;;chr17:46675586..46675600,-!p6@HOXB6!0.59!2.92!HOXB6;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.92!ZFY;;chr9:16705069..16705086,-!p3@BNC2!0.59!2.92!BNC2;;chr7:44143925..44143970,+!p1@AEBP1!0.58!77.41!AEBP1;;chr5:34929947..34930005,+!p3@DNAJC21!0.58!9.49!DNAJC21;;chr10:94449675..94449694,+!p2@HHEX!0.58!8.76!HHEX;;chr17:46655730..46655791,-!p1@HOXB4!0.58!8.03!HOXB4;;chr3:168864315..168864339,-!p2@MECOM!0.58!5.11!MECOM;;chr2:66662895..66662907,+!p3@MEIS1!0.58!3.65!MEIS1;;chr6:43140095..43140145,+!p5@SRF!0.58!3.65!SRF;;chr8:49833948..49833973,-!p2@SNAI2!0.57!21.18!SNAI2;;chr15:57511609..57511651,+!p2@TCF12!0.57!5.11!TCF12;;chr17:41622925..41622976,-!p3@ETV4!0.57!4.38!ETV4;;chr17:3571887..3571918,-!p2@TAX1BP3!0.56!36.52!TAX1BP3;;chr1:158979792..158979814,+!p2@IFI16!0.56!31.40!IFI16;;chr6:21597765..21597779,+!p2@SOX4!0.56!26.29!SOX4;;chrX:66763815..66763854,+!p2@AR!0.56!3.65!AR;;chr17:41623692..41623715,-!p1@ETV4!0.55!13.15!ETV4;;chr12:66218378..66218401,+!p6@HMGA2!0.55!4.38!HMGA2;;chr2:46612334..46612349,+!p6@EPAS1!0.55!3.65!EPAS1;;chr4:81118647..81118666,+!p1@PRDM8!0.55!3.65!PRDM8;;chr11:46299186..46299195,+!p3@CREB3L1!0.55!2.92!CREB3L1;;chr3:52001448..52001478,-!p2@PCBP4!0.54!43.82!PCBP4;;chr6:21597370..21597408,+!p5@SOX4!0.54!4.38!SOX4;;chr5:43067636..43067674,+!p6@ZNF131!0.54!3.65!ZNF131;;chr17:46687959..46688007,-!p2@HOXB7!0.54!3.65!HOXB7;;chr10:63809013..63809041,+!p3@ARID5B!0.53!16.80!ARID5B;;chr7:19157248..19157268,-!p1@TWIST1!0.53!8.03!TWIST1;;chr6:1312325..1312340,+!p1@FOXQ1!0.53!4.38!FOXQ1;;chr10:63809106..63809127,+!p1@ARID5B!0.52!40.17!ARID5B;;chr11:65687158..65687216,+!p4@DRAP1!0.52!16.80!DRAP1;;chr2:66662249..66662267,+!p2@MEIS1!0.52!10.95!MEIS1;;chr19:52839515..52839572,+!p1@ZNF610!0.52!5.84!ZNF610;;chr15:96869292..96869320,+!p15@NR2F2!0.52!3.65!NR2F2;;chrX:66763856..66763896,+!p1@AR!0.52!3.65!AR;;chr8:145159846..145159889,+!p6@MAF1!0.52!3.65!MAF1;;chr17:41622834..41622883,-!p6@ETV4!0.52!2.92!ETV4;;chr2:46602879..46602899,+!p8@EPAS1!0.52!2.92!EPAS1;;chr10:63853436..63853442,+!p4@ARID5B!0.51!15.34!ARID5B;;chr16:86600426..86600441,+!p1@FOXC2!0.51!6.57!FOXC2;;chr10:94449649..94449664,+!p3@HHEX!0.51!3.65!HHEX;;chr4:146402966..146402985,+!p2@SMAD1!0.50!10.22!SMAD1;;chr14:73360799..73360817,-!p1@DPF3!0.50!9.49!DPF3;;chr14:35872962..35873025,-!p3@NFKBIA!0.50!6.57!NFKBIA;;chr7:19157043..19157088,-!p2@TWIST1!0.50!6.57!TWIST1;;chr19:56152332..56152347,+!p4@ZNF580!0.50!5.84!ZNF580;;chr1:151032833..151032850,+!p3@MLLT11!0.50!5.84!MLLT11;;chr19:19303047..19303079,+!p3@RFXANK!0.50!5.84!RFXANK;;chr1:151032782..151032801,+!p4@MLLT11!0.50!5.11!MLLT11;;chr1:158985493..158985535,+!p4@IFI16!0.50!3.65!IFI16;;chr17:46655704..46655718,-!p2@HOXB4!0.50!3.65!HOXB4;;chr12:80083544..80083558,-!p13@PAWR!0.50!2.92!PAWR;;chr1:151032739..151032748,+!p6@MLLT11!0.50!2.92!MLLT11;;chr19:45254481..45254495,+!p13@BCL3!0.50!2.19!BCL3;;chr1:170632310..170632321,+!p15@PRRX1!0.50!2.19!PRRX1;;chr1:170632583..170632590,+!p26@PRRX1!0.50!2.19!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.50!2.19!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.50!2.19!PRRX1;;chr1:170633021..170633028,+!p27@PRRX1!0.50!2.19!PRRX1;;chr1:43162358..43162369,+!p11@YBX1!0.50!2.19!YBX1;;chr15:96869165..96869183,+!p20@NR2F2!0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FG;;chr3:71630690..71630750,-!p11@FOXP1!0.18!1.46!FOXP1;;chr2:27805971..27805981,+!p3@ZNF512!0.18!0.73!ZNF512;;chr3:37217544..37217586,-!p6@LRRFIP2!0.18!0.73!LRRFIP2;;chr6:157098993..157099006,+!p12@ARID1B!0.18!0.73!ARID1B;;chr10:3824229..3824253,-!p7@KLF6!0.18!0.73!KLF6;;chr12:57914481..57914509,+!p5@MBD6!0.18!0.73!MBD6;;chr16:67063262..67063273,+!p7@CBFB!0.18!0.73!CBFB;;chr18:3447572..3447603,+!p17@TGIF1!0.18!0.73!TGIF1;;chr19:20011696..20011705,+!p4@ZNF93!0.18!0.73!ZNF93;;chr19:58666502..58666519,-!p4@ZNF329!0.18!0.73!ZNF329;;chr1:164528687..164528711,+!p6@PBX1!0.18!0.73!PBX1;;chr22:41697520..41697613,+!p1@ZC3H7B!0.17!76.68!ZC3H7B;;chr3:71114066..71114114,-!p1@FOXP1!0.17!27.02!FOXP1;;chr10:31608127..31608156,+!p1@ZEB1!0.17!24.10!ZEB1;;chr3:178789566..178789620,-!p1@ZMAT3!0.17!23.37!ZMAT3;;chr6:35464817..35464894,-!p1@TEAD3!0.17!19.72!TEAD3;;chr11:64073022..64073056,+!p1@ESRRA!0.17!15.34!ESRRA;;chr10:76586348..76586366,+!p1@KAT6B!0.17!9.49!KAT6B;;chr8:37553261..37553282,+!p2@ZNF703!0.17!9.49!ZNF703;;chr1:161015676..161015694,-!p3@USF1!0.17!4.38!USF1;;chr19:7069426..7069482,+!p2@ZNF557!0.17!2.92!ZNF557;;chr21:36259445..36259519,-!p4@RUNX1!0.17!2.92!RUNX1;;chr6:126102254..126102289,+!p5@NCOA7!0.17!2.92!NCOA7;;chr19:44905759..44905797,-!p2@ZFP112,p2@ZNF285!0.17!2.19!ZNF285;;chr2:113993052..113993097,-!p2@PAX8!0.17!2.19!PAX8;;chr12:53848505..53848532,+!p4@PCBP2!0.17!2.19!PCBP2;;chr18:32821037..32821057,+!p2@ZNF397!0.17!2.19!ZNF397;;chr15:67358146..67358157,+!p7@SMAD3!0.17!1.46!SMAD3;;chr18:53257001..53257015,-!p5@TCF4!0.17!1.46!TCF4;;chr19:3572908..3572917,+!p3@HMG20B!0.17!1.46!HMG20B;;chr5:132299037..132299048,-!p7@AFF4!0.17!1.46!AFF4;;chr6:157099159..157099185,+!p6@ARID1B!0.17!1.46!ARID1B;;chr6:45390002..45390023,+!p6@RUNX2!0.17!1.46!RUNX2;;chr7:113726357..113726443,+!p1@FOXP2!0.17!1.46!FOXP2;;chr7:150076370..150076396,+!p2@ZNF775!0.17!1.46!ZNF775;;chr11:67007522..67007533,+!p5@KDM2A!0.17!1.46!KDM2A;;chr3:71114115..71114126,-!p14@FOXP1!0.17!1.46!FOXP1;;chr3:169381420..169381535,-!p1@MECOM!0.17!0.73!MECOM;;chr4:2264015..2264041,-!p4@MXD4!0.17!0.73!MXD4;;chr4:83822199..83822239,+!p2@THAP9!0.17!0.73!THAP9;;chr15:77197753..77197772,-!p2@SCAPER!0.17!0.73!SCAPER;;chr17:46620898..46620927,-!p9@HOXB2!0.17!0.73!HOXB2;;chr1:150849208..150849217,-!p3@ARNT!0.17!0.73!ARNT;;chr12:96640858..96640878,+!p6@ELK3!0.17!0.73!ELK3;;chr14:35873136..35873155,-!p9@NFKBIA!0.17!0.73!NFKBIA;;chr8:128752734..128752763,+!p13@MYC!0.17!0.73!MYC;;chr11:65667846..65667868,-!p1@FOSL1!0.16!34.32!FOSL1;;chr15:67358163..67358192,+!p1@SMAD3!0.16!29.94!SMAD3;;chr7:148892653..148892729,+!p1@ZNF282!0.16!18.26!ZNF282;;chr21:44394645..44394737,+!p1@PKNOX1!0.16!10.22!PKNOX1;;chr16:29819403..29819442,+!p5@MAZ!0.16!10.22!MAZ;;chr8:145980808..145980922,-!p1@ZNF251!0.16!8.76!ZNF251;;chr19:52901094..52901134,+!p1@ZNF528!0.16!8.03!ZNF528;;chr19:57106647..57106686,+!p1@ZNF71!0.16!8.03!ZNF71;;chr10:104154246..104154347,+!p3@NFKB2!0.16!7.30!NFKB2;;chr6:43139041..43139094,+!p3@SRF!0.16!6.57!SRF;;chr19:44952635..44952668,-!p1@ZNF229!0.16!5.84!ZNF229;;chr19:36134528..36134563,+!p1@ETV2!0.16!2.92!ETV2;;chr19:35225078..35225120,+!p2@ZNF181!0.16!2.19!ZNF181;;chr10:63809134..63809145,+!p6@ARID5B!0.16!2.19!ARID5B;;chr19:56988677..56988729,-!p1@ZNF667!0.16!1.46!ZNF667;;chr1:91487806..91487826,-!p5@ZNF644!0.16!1.46!ZNF644;;chr16:8962202..8962222,-!p3@CARHSP1!0.16!1.46!CARHSP1;; | |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.98!94.94!SOX17;;chr21:38071430..38071456,+!p1@SIM2!1.75!54.77!SIM2;;chr1:170633348..170633399,+!p2@PRRX1!1.53!44.55!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.40!216.90!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.39!23.37!FOXG1;;chr14:29236269..29236285,+!p3@FOXG1!1.37!22.64!FOXG1;;chr1:170632285..170632309,+!p1@PRRX1!1.34!23.37!PRRX1;;chr14:29234581..29234601,+!p2@FOXG1!1.33!20.45!FOXG1;;chr12:66218598..66218645,+!p2@HMGA2!1.24!75.22!HMGA2;;chr17:1959369..1959388,+!p2@HIC1!1.24!43.09!HIC1;;chr1:170633262..170633285,+!p3@PRRX1!1.21!17.53!PRRX1;;chr8:11561684..11561751,+!p1@GATA4!1.19!14.61!GATA4;;chr12:66218923..66218934,+!p14@HMGA2!1.17!13.88!HMGA2;;chr11:34642612..34642646,+!p1@EHF!1.10!11.68!EHF;;chr11:46299199..46299233,+!p1@CREB3L1!1.08!57.69!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!1.08!10.95!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!1.08!10.95!PRRX1;;chr10:94449703..94449718,+!p1@HHEX!1.07!41.63!HHEX;;chr3:141087393..141087426,+!p3@ZBTB38!1.05!41.63!ZBTB38;;chr12:66218255..66218304,+!p3@HMGA2!0.99!24.10!HMGA2;;chr6:45296048..45296082,+!p1@RUNX2!0.99!10.22!RUNX2;;chr2:19558373..19558392,-!p1@OSR1!0.98!24.10!OSR1;;chr1:170632959..170632987,+!p4@PRRX1!0.98!9.49!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.96!37.98!FOXD1;;chr17:46621937..46621966,-!p2@HOXB2!0.96!22.64!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.96!9.49!BNC1;;chr17:46622205..46622218,-!p3@HOXB2!0.96!9.49!HOXB2;;chr8:55370720..55370733,+!p2@SOX17!0.96!8.03!SOX17;;chr11:61520075..61520136,+!p1@C11orf9!0.92!16.07!C11orf9;;chr1:170632723..170632739,+!p8@PRRX1!0.92!7.30!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!0.91!12.42!CREB3L1;;chr3:141105705..141105770,+!p4@ZBTB38!0.91!8.76!ZBTB38;;chr19:42636586..42636607,-!p1@POU2F2!0.90!19.72!POU2F2;;chr16:86544113..86544145,+!p1@FOXF1!0.90!8.76!FOXF1;;chr1:151032860..151032918,+!p1@MLLT11!0.89!84.72!MLLT11;;chr17:46622070..46622109,-!p1@HOXB2!0.88!15.34!HOXB2;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.57!TBX20;;chr1:170632115..170632136,+!p9@PRRX1!0.88!6.57!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.88!6.57!SIM2;;chr15:96876966..96877017,+!p12@NR2F2!0.87!9.49!NR2F2;;chr2:239756739..239756755,+!p2@TWIST2!0.86!10.95!TWIST2;;chr3:157823517..157823562,-!p1@SHOX2!0.85!6.57!SHOX2;;chr17:46688334..46688385,-!p1@HOXB7!0.84!8.76!HOXB7;;chr12:66218212..66218244,+!p5@HMGA2!0.84!8.76!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!0.84!5.84!HOXB6;;chr2:102091144..102091183,-!p2@RFX8!0.84!5.84!RFX8;;chr1:170633058..170633084,+!p5@PRRX1!0.84!5.84!PRRX1;;chr15:96869255..96869291,+!p6@NR2F2!0.83!10.95!NR2F2;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.49!MLLT11;;chr2:239756671..239756732,+!p1@TWIST2!0.80!18.26!TWIST2;;chr11:65686802..65686818,+!p6@DRAP1!0.79!9.49!DRAP1;;chr17:46622440..46622477,-!p5@HOXB2!0.79!5.84!HOXB2;;chr21:38071462..38071474,+!p3@SIM2!0.79!5.11!SIM2;;chr5:139492456..139492489,+!p7@PURA!0.79!5.11!PURA;;chr6:134210243..134210257,+!p1@TCF21!0.79!5.11!TCF21;;chr1:37940170..37940190,+!p1@ZC3H12A!0.75!63.54!ZC3H12A;;chr17:41622765..41622821,-!p2@ETV4!0.75!7.30!ETV4;;chr11:65687362..65687436,+!p3@DRAP1!0.74!22.64!DRAP1;;chr20:42543441..42543497,+!p1@TOX2!0.73!21.91!TOX2;;chr1:170632051..170632081,+!p16@PRRX1!0.73!4.38!PRRX1;;chr11:46333934..46333963,+!p5@CREB3L1!0.73!4.38!CREB3L1;;chr12:66357214..66357233,+!p13@HMGA2!0.73!4.38!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.73!4.38!HMGA2;;chr17:46655672..46655697,-!p3@HOXB4!0.73!4.38!HOXB4;;chr7:27169801..27169844,-!p2@HOXA4!0.73!4.38!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.73!4.38!HOXA5;;chrY:21906594..21906622,-!p1@KDM5D!0.73!4.38!KDM5D;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!343.98!TAX1BP3;;chr11:128563948..128564003,+!p1@FLI1!0.72!57.69!FLI1;;chr5:72743793..72743855,-!p4@FOXD1!0.72!5.11!FOXD1;;chr6:43140149..43140177,+!p8@SRF!0.70!4.38!SRF;;chr17:1958388..1958404,+!p1@HIC1!0.69!28.48!HIC1;;chr12:66218183..66218209,+!p4@HMGA2!0.69!8.03!HMGA2;;chr1:221052776..221052799,+!p1@HLX!0.68!7.30!HLX;;chr17:41623009..41623053,-!p4@ETV4!0.68!6.57!ETV4;;chr8:72756267..72756296,-!p4@MSC!0.68!5.84!MSC;;chr8:72756213..72756243,-!p5@MSC!0.68!5.11!MSC;;chr5:72744445..72744466,-!p2@FOXD1!0.67!6.57!FOXD1;;chr6:21597600..21597664,+!p3@SOX4!0.67!6.57!SOX4;;chr12:66218573..66218596,+!p7@HMGA2!0.67!5.84!HMGA2;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.65!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!0.67!3.65!HOXA3;;chr7:27183291..27183324,-!p1@HOXA5!0.67!3.65!HOXA5;;chr16:30406423..30406447,+!p4@ZNF48!0.67!3.65!ZNF48;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.65!ZNF668;;chr17:46655578..46655589,-!p4@HOXB4!0.67!3.65!HOXB4;;chr17:46659728..46659749,-!p3@HOXB3!0.67!3.65!HOXB3;;chr19:9609272..9609297,-!p1@ZNF560!0.67!3.65!ZNF560;;chr1:170632477..170632506,+!p6@PRRX1!0.67!3.65!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.67!3.65!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.67!3.65!PRRX1;;chr21:38071488..38071502,+!p4@SIM2!0.67!3.65!SIM2;;chr7:26191809..26191890,+!p1@NFE2L3!0.66!20.45!NFE2L3;;chr2:66662281..66662308,+!p1@MEIS1!0.66!13.88!MEIS1;;chr15:96869222..96869251,+!p18@NR2F2!0.66!4.38!NR2F2;;chr6:34204921..34204939,+!p3@HMGA1!0.65!122.69!HMGA1;;chr14:62162258..62162269,+!p2@HIF1A!0.65!38.71!HIF1A;;chr1:221053049..221053075,+!p3@HLX!0.65!6.57!HLX;;chr20:50721803..50721857,-!p2@ZFP64!0.65!5.84!ZFP64;;chr19:13134457..13134462,+!p5@NFIX!0.64!6.57!NFIX;;chr5:72744562..72744573,-!p3@FOXD1!0.64!4.38!FOXD1;;chr11:65686732..65686756,+!p2@DRAP1!0.63!16.07!DRAP1;;chr12:125002739..125002756,-!p6@NCOR2!0.63!5.11!NCOR2;;chr5:321810..321877,+!p1@AHRR!0.62!11.68!AHRR;;chr18:53068911..53068935,-!p4@TCF4!0.62!3.65!TCF4;;chr6:34205372..34205412,+!p5@HMGA1!0.61!18.26!HMGA1;;chr17:46675420..46675465,-!p3@HOXB6!0.61!3.65!HOXB6;;chr9:35732647..35732678,+!p2@CREB3!0.60!19.72!CREB3;;chr4:4861385..4861398,+!p1@MSX1!0.60!10.22!MSX1;;chr3:52001396..52001425,-!p4@PCBP4!0.60!5.84!PCBP4;;chr1:221052840..221052875,+!p4@HLX!0.60!3.65!HLX;;chr17:46622229..46622257,-!p6@HOXB2!0.60!3.65!HOXB2;;chr20:42543506..42543549,+!p2@TOX2!0.59!8.03!TOX2;;chr8:72756063..72756125,-!p1@MSC!0.59!6.57!MSC;;chr7:27142290..27142310,-!p1@HOXA2!0.59!2.92!HOXA2;;chr8:55370693..55370704,+!p4@SOX17!0.59!2.92!SOX17;;chr1:170632028..170632043,+!p20@PRRX1!0.59!2.92!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.59!2.92!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.59!2.92!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.59!2.92!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.59!2.92!EBF3;;chr14:29236169..29236216,+!p6@FOXG1!0.59!2.92!FOXG1;;chr2:102091566..102091581,-!p1@RFX8!0.59!2.92!RFX8;;chr2:66662510..66662521,+!p6@MEIS1!0.59!2.92!MEIS1;;chr16:86612320..86612394,+!p1@FOXL1!0.59!2.92!FOXL1;;chr17:41622731..41622764,-!p5@ETV4!0.59!2.92!ETV4;;chr17:46621146..46621180,-!p10@HOXB2!0.59!2.92!HOXB2;;chr17:46675586..46675600,-!p6@HOXB6!0.59!2.92!HOXB6;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.92!ZFY;;chr9:16705069..16705086,-!p3@BNC2!0.59!2.92!BNC2;;chr7:44143925..44143970,+!p1@AEBP1!0.58!77.41!AEBP1;;chr5:34929947..34930005,+!p3@DNAJC21!0.58!9.49!DNAJC21;;chr10:94449675..94449694,+!p2@HHEX!0.58!8.76!HHEX;;chr17:46655730..46655791,-!p1@HOXB4!0.58!8.03!HOXB4;;chr3:168864315..168864339,-!p2@MECOM!0.58!5.11!MECOM;;chr2:66662895..66662907,+!p3@MEIS1!0.58!3.65!MEIS1;;chr6:43140095..43140145,+!p5@SRF!0.58!3.65!SRF;;chr8:49833948..49833973,-!p2@SNAI2!0.57!21.18!SNAI2;;chr15:57511609..57511651,+!p2@TCF12!0.57!5.11!TCF12;;chr17:41622925..41622976,-!p3@ETV4!0.57!4.38!ETV4;;chr17:3571887..3571918,-!p2@TAX1BP3!0.56!36.52!TAX1BP3;;chr1:158979792..158979814,+!p2@IFI16!0.56!31.40!IFI16;;chr6:21597765..21597779,+!p2@SOX4!0.56!26.29!SOX4;;chrX:66763815..66763854,+!p2@AR!0.56!3.65!AR;;chr17:41623692..41623715,-!p1@ETV4!0.55!13.15!ETV4;;chr12:66218378..66218401,+!p6@HMGA2!0.55!4.38!HMGA2;;chr2:46612334..46612349,+!p6@EPAS1!0.55!3.65!EPAS1;;chr4:81118647..81118666,+!p1@PRDM8!0.55!3.65!PRDM8;;chr11:46299186..46299195,+!p3@CREB3L1!0.55!2.92!CREB3L1;;chr3:52001448..52001478,-!p2@PCBP4!0.54!43.82!PCBP4;;chr6:21597370..21597408,+!p5@SOX4!0.54!4.38!SOX4;;chr5:43067636..43067674,+!p6@ZNF131!0.54!3.65!ZNF131;;chr17:46687959..46688007,-!p2@HOXB7!0.54!3.65!HOXB7;;chr10:63809013..63809041,+!p3@ARID5B!0.53!16.80!ARID5B;;chr7:19157248..19157268,-!p1@TWIST1!0.53!8.03!TWIST1;;chr6:1312325..1312340,+!p1@FOXQ1!0.53!4.38!FOXQ1;;chr10:63809106..63809127,+!p1@ARID5B!0.52!40.17!ARID5B;;chr11:65687158..65687216,+!p4@DRAP1!0.52!16.80!DRAP1;;chr2:66662249..66662267,+!p2@MEIS1!0.52!10.95!MEIS1;;chr19:52839515..52839572,+!p1@ZNF610!0.52!5.84!ZNF610;;chr15:96869292..96869320,+!p15@NR2F2!0.52!3.65!NR2F2;;chrX:66763856..66763896,+!p1@AR!0.52!3.65!AR;;chr8:145159846..145159889,+!p6@MAF1!0.52!3.65!MAF1;;chr17:41622834..41622883,-!p6@ETV4!0.52!2.92!ETV4;;chr2:46602879..46602899,+!p8@EPAS1!0.52!2.92!EPAS1;;chr10:63853436..63853442,+!p4@ARID5B!0.51!15.34!ARID5B;;chr16:86600426..86600441,+!p1@FOXC2!0.51!6.57!FOXC2;;chr10:94449649..94449664,+!p3@HHEX!0.51!3.65!HHEX;;chr4:146402966..146402985,+!p2@SMAD1!0.50!10.22!SMAD1;;chr14:73360799..73360817,-!p1@DPF3!0.50!9.49!DPF3;;chr14:35872962..35873025,-!p3@NFKBIA!0.50!6.57!NFKBIA;;chr7:19157043..19157088,-!p2@TWIST1!0.50!6.57!TWIST1;;chr19:56152332..56152347,+!p4@ZNF580!0.50!5.84!ZNF580;;chr1:151032833..151032850,+!p3@MLLT11!0.50!5.84!MLLT11;;chr19:19303047..19303079,+!p3@RFXANK!0.50!5.84!RFXANK;;chr1:151032782..151032801,+!p4@MLLT11!0.50!5.11!MLLT11;;chr1:158985493..158985535,+!p4@IFI16!0.50!3.65!IFI16;;chr17:46655704..46655718,-!p2@HOXB4!0.50!3.65!HOXB4;;chr12:80083544..80083558,-!p13@PAWR!0.50!2.92!PAWR;;chr1:151032739..151032748,+!p6@MLLT11!0.50!2.92!MLLT11;;chr19:45254481..45254495,+!p13@BCL3!0.50!2.19!BCL3;;chr1:170632310..170632321,+!p15@PRRX1!0.50!2.19!PRRX1;;chr1:170632583..170632590,+!p26@PRRX1!0.50!2.19!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.50!2.19!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.50!2.19!PRRX1;;chr1:170633021..170633028,+!p27@PRRX1!0.50!2.19!PRRX1;;chr1:43162358..43162369,+!p11@YBX1!0.50!2.19!YBX1;;chr15:96869165..96869183,+!p20@NR2F2!0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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002539;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 43: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000340,FF:0000556,FF:12652-134H6 | |fonse_treatment_closure=EFO:0000369,FF:0000340,FF:0000556,FF:12652-134H6 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520IL1b%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK31%2529.CNhs13349.12652-134H6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12652-134H6 | |id=FF:12652-134H6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000556 | ||
|name=Aortic smooth muscle cell response to IL1b | |is_obsolete= | ||
|library_id=CNhs13349 | |||
|library_id_phase_based=2:CNhs13349 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12652 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12652 | |||
|name=Aortic smooth muscle cell response to IL1b | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13349,LSID1022,release013,COMPLETED | |profile_hcage=CNhs13349,LSID1022,release013,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=134 | |rna_box=134 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 80: | ||
|rna_weight_ug=4.57 | |rna_weight_ug=4.57 | ||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 76: | Line 100: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|time= 00hr00min | |||
|timecourse=AoSMC_response_to_IL1b | |||
|top_motifs=PAX1,9:1.94780218583;ALX4:1.86336053507;NKX3-1:1.66639015817;XBP1:1.51390624454;TP53:1.41224165895;POU1F1:1.38719212601;UFEwm:1.32644518347;ZNF238:1.11321167136;EVI1:1.10945567756;HMGA1,2:1.10623590066;NFE2L1:1.09621331021;GZF1:1.03046874773;TAL1_TCF{3,4,12}:0.901564024994;SRF:0.893922449756;NKX2-2,8:0.892626684838;TFAP4:0.887612377893;EBF1:0.849238781431;ONECUT1,2:0.848304966534;POU3F1..4:0.843003243495;GCM1,2:0.831311552945;DBP:0.808717327857;POU6F1:0.778418163962;ALX1:0.763176901011;CDC5L:0.75057208183;TBP:0.730754820655;GLI1..3:0.73064222722;RXR{A,B,G}:0.701249785912;HMX1:0.684381409711;GFI1B:0.682329191124;MYBL2:0.681753560991;ZBTB6:0.659247789326;PAX4:0.650873672095;HES1:0.636203562458;FOXL1:0.622221016994;NKX3-2:0.613572801016;TLX1..3_NFIC{dimer}:0.596462897714;HOX{A5,B5}:0.572464593972;TEAD1:0.558919268225;NFATC1..3:0.557947316003;EN1,2:0.543212722202;KLF4:0.541256886031;GTF2A1,2:0.529479693941;HOX{A4,D4}:0.465081172938;HBP1_HMGB_SSRP1_UBTF:0.457852614575;ATF6:0.45434034771;TFCP2:0.421675660578;LHX3,4:0.41920044004;PITX1..3:0.398044298888;TBX4,5:0.361287759691;NFE2L2:0.3530869328;ZIC1..3:0.353026460909;BACH2:0.342901515677;FOXM1:0.319898931381;bHLH_family:0.313090507723;GATA4:0.306929601409;ZNF384:0.298697900445;NFIX:0.287895499375;TEF:0.267966260132;FOXD3:0.243874603894;HSF1,2:0.229676799375;PAX8:0.22548285182;HLF:0.222792900218;NKX2-1,4:0.220170681093;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.217857826231;REST:0.211964059902;IKZF1:0.204093476444;PPARG:0.198657351803;NR3C1:0.177476687918;BPTF:0.174193002775;AIRE:0.158833502818;NKX6-1,2:0.155581361041;SMAD1..7,9:0.144947298442;PBX1:0.139111701658;FOXQ1:0.13311214877;SOX17:0.130149089497;PAX6:0.120553724418;HOXA9_MEIS1:0.116676661331;NANOG{mouse}:0.102085922757;AR:0.0952504458155;FOS_FOS{B,L1}_JUN{B,D}:0.0790075192919;PRDM1:0.0558153357279;GTF2I:0.0536429612331;MAFB:0.0515462442082;HAND1,2:0.0282500654696;PAX5:0.0263154016449;RXRA_VDR{dimer}:0.0195088880541;NFKB1_REL_RELA:0.00427095259224;MTE{core}:-0.0307613575391;FOSL2:-0.0349494276833;VSX1,2:-0.0430838652809;FOXP3:-0.0483209251919;NFE2:-0.0603074339547;RUNX1..3:-0.0668050289076;MZF1:-0.0854982536596;ELK1,4_GABP{A,B1}:-0.0895122991252;SOX2:-0.0986773567095;AHR_ARNT_ARNT2:-0.1203485015;TLX2:-0.142356346711;TFAP2{A,C}:-0.147662265006;HNF1A:-0.152543031126;ESR1:-0.158993240797;LEF1_TCF7_TCF7L1,2:-0.171706185485;ADNP_IRX_SIX_ZHX:-0.175271277935;IKZF2:-0.184557660495;POU2F1..3:-0.186235263425;SOX{8,9,10}:-0.189273597829;YY1:-0.194662984074;CDX1,2,4:-0.195957081097;MEF2{A,B,C,D}:-0.20839750191;STAT2,4,6:-0.220357189632;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.221845892441;PATZ1:-0.238289823521;CRX:-0.241442687753;DMAP1_NCOR{1,2}_SMARC:-0.259267711291;PRRX1,2:-0.262465890115;ELF1,2,4:-0.26270141793;PAX2:-0.265218208589;ZBTB16:-0.268905988972;ETS1,2:-0.290109391929;JUN:-0.30359241207;HIF1A:-0.310067429122;TFAP2B:-0.31974095584;NR6A1:-0.320151144418;OCT4_SOX2{dimer}:-0.322116976302;HNF4A_NR2F1,2:-0.32329384936;MAZ:-0.325346322242;MED-1{core}:-0.329462474697;SPZ1:-0.335702958719;NHLH1,2:-0.336009087284;ARID5B:-0.344869978299;NFIL3:-0.357155788241;GFI1:-0.35930021374;SOX5:-0.381431795447;SPI1:-0.381879711252;STAT5{A,B}:-0.383445653755;XCPE1{core}:-0.402327455198;CEBPA,B_DDIT3:-0.406905496007;FOX{I1,J2}:-0.428697648395;NRF1:-0.452405543844;SNAI1..3:-0.454375145235;HOX{A6,A7,B6,B7}:-0.458747780472;MYB:-0.477423423726;IRF1,2:-0.478992592091;MYFfamily:-0.482055861095;HIC1:-0.490473094254;ESRRA:-0.490897169883;SPIB:-0.492947159442;RFX1:-0.504394300263;FOX{D1,D2}:-0.507359521014;ZNF423:-0.511584319803;ZEB1:-0.528883294434;CREB1:-0.530712435199;ZNF143:-0.531012677254;NKX2-3_NKX2-5:-0.542250321249;ZFP161:-0.545821419482;LMO2:-0.56620259876;MTF1:-0.567381817429;RREB1:-0.568751262885;ATF5_CREB3:-0.580909485418;ATF2:-0.586967953241;POU5F1:-0.602261756148;NR1H4:-0.621428693055;FOX{F1,F2,J1}:-0.626631936988;ZNF148:-0.658819194043;TOPORS:-0.664685895321;TFDP1:-0.679587160592;FOXP1:-0.691079721491;E2F1..5:-0.694514747474;CUX2:-0.723403401932;TGIF1:-0.735440799335;GATA6:-0.789495613141;FOXO1,3,4:-0.797327301443;EGR1..3:-0.818521802785;SREBF1,2:-0.861373594492;RFX2..5_RFXANK_RFXAP:-0.881575550495;SP1:-0.903191868233;ATF4:-0.938139949694;STAT1,3:-0.941200128162;NR5A1,2:-0.976155856399;RORA:-0.995978335105;IRF7:-1.00723899868;MYOD1:-1.05154255807;PDX1:-1.07180012588;FOXN1:-1.13273546002;NANOG:-1.15601594546;PAX3,7:-1.18622121647;NFY{A,B,C}:-1.30204562688;FOXA2:-1.39233155104;BREu{core}:-1.54522580694;RBPJ:-1.55998955035;EP300:-1.76570255321;T:-1.86224655859 | |top_motifs=PAX1,9:1.94780218583;ALX4:1.86336053507;NKX3-1:1.66639015817;XBP1:1.51390624454;TP53:1.41224165895;POU1F1:1.38719212601;UFEwm:1.32644518347;ZNF238:1.11321167136;EVI1:1.10945567756;HMGA1,2:1.10623590066;NFE2L1:1.09621331021;GZF1:1.03046874773;TAL1_TCF{3,4,12}:0.901564024994;SRF:0.893922449756;NKX2-2,8:0.892626684838;TFAP4:0.887612377893;EBF1:0.849238781431;ONECUT1,2:0.848304966534;POU3F1..4:0.843003243495;GCM1,2:0.831311552945;DBP:0.808717327857;POU6F1:0.778418163962;ALX1:0.763176901011;CDC5L:0.75057208183;TBP:0.730754820655;GLI1..3:0.73064222722;RXR{A,B,G}:0.701249785912;HMX1:0.684381409711;GFI1B:0.682329191124;MYBL2:0.681753560991;ZBTB6:0.659247789326;PAX4:0.650873672095;HES1:0.636203562458;FOXL1:0.622221016994;NKX3-2:0.613572801016;TLX1..3_NFIC{dimer}:0.596462897714;HOX{A5,B5}:0.572464593972;TEAD1:0.558919268225;NFATC1..3:0.557947316003;EN1,2:0.543212722202;KLF4:0.541256886031;GTF2A1,2:0.529479693941;HOX{A4,D4}:0.465081172938;HBP1_HMGB_SSRP1_UBTF:0.457852614575;ATF6:0.45434034771;TFCP2:0.421675660578;LHX3,4:0.41920044004;PITX1..3:0.398044298888;TBX4,5:0.361287759691;NFE2L2:0.3530869328;ZIC1..3:0.353026460909;BACH2:0.342901515677;FOXM1:0.319898931381;bHLH_family:0.313090507723;GATA4:0.306929601409;ZNF384:0.298697900445;NFIX:0.287895499375;TEF:0.267966260132;FOXD3:0.243874603894;HSF1,2:0.229676799375;PAX8:0.22548285182;HLF:0.222792900218;NKX2-1,4:0.220170681093;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.217857826231;REST:0.211964059902;IKZF1:0.204093476444;PPARG:0.198657351803;NR3C1:0.177476687918;BPTF:0.174193002775;AIRE:0.158833502818;NKX6-1,2:0.155581361041;SMAD1..7,9:0.144947298442;PBX1:0.139111701658;FOXQ1:0.13311214877;SOX17:0.130149089497;PAX6:0.120553724418;HOXA9_MEIS1:0.116676661331;NANOG{mouse}:0.102085922757;AR:0.0952504458155;FOS_FOS{B,L1}_JUN{B,D}:0.0790075192919;PRDM1:0.0558153357279;GTF2I:0.0536429612331;MAFB:0.0515462442082;HAND1,2:0.0282500654696;PAX5:0.0263154016449;RXRA_VDR{dimer}:0.0195088880541;NFKB1_REL_RELA:0.00427095259224;MTE{core}:-0.0307613575391;FOSL2:-0.0349494276833;VSX1,2:-0.0430838652809;FOXP3:-0.0483209251919;NFE2:-0.0603074339547;RUNX1..3:-0.0668050289076;MZF1:-0.0854982536596;ELK1,4_GABP{A,B1}:-0.0895122991252;SOX2:-0.0986773567095;AHR_ARNT_ARNT2:-0.1203485015;TLX2:-0.142356346711;TFAP2{A,C}:-0.147662265006;HNF1A:-0.152543031126;ESR1:-0.158993240797;LEF1_TCF7_TCF7L1,2:-0.171706185485;ADNP_IRX_SIX_ZHX:-0.175271277935;IKZF2:-0.184557660495;POU2F1..3:-0.186235263425;SOX{8,9,10}:-0.189273597829;YY1:-0.194662984074;CDX1,2,4:-0.195957081097;MEF2{A,B,C,D}:-0.20839750191;STAT2,4,6:-0.220357189632;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.221845892441;PATZ1:-0.238289823521;CRX:-0.241442687753;DMAP1_NCOR{1,2}_SMARC:-0.259267711291;PRRX1,2:-0.262465890115;ELF1,2,4:-0.26270141793;PAX2:-0.265218208589;ZBTB16:-0.268905988972;ETS1,2:-0.290109391929;JUN:-0.30359241207;HIF1A:-0.310067429122;TFAP2B:-0.31974095584;NR6A1:-0.320151144418;OCT4_SOX2{dimer}:-0.322116976302;HNF4A_NR2F1,2:-0.32329384936;MAZ:-0.325346322242;MED-1{core}:-0.329462474697;SPZ1:-0.335702958719;NHLH1,2:-0.336009087284;ARID5B:-0.344869978299;NFIL3:-0.357155788241;GFI1:-0.35930021374;SOX5:-0.381431795447;SPI1:-0.381879711252;STAT5{A,B}:-0.383445653755;XCPE1{core}:-0.402327455198;CEBPA,B_DDIT3:-0.406905496007;FOX{I1,J2}:-0.428697648395;NRF1:-0.452405543844;SNAI1..3:-0.454375145235;HOX{A6,A7,B6,B7}:-0.458747780472;MYB:-0.477423423726;IRF1,2:-0.478992592091;MYFfamily:-0.482055861095;HIC1:-0.490473094254;ESRRA:-0.490897169883;SPIB:-0.492947159442;RFX1:-0.504394300263;FOX{D1,D2}:-0.507359521014;ZNF423:-0.511584319803;ZEB1:-0.528883294434;CREB1:-0.530712435199;ZNF143:-0.531012677254;NKX2-3_NKX2-5:-0.542250321249;ZFP161:-0.545821419482;LMO2:-0.56620259876;MTF1:-0.567381817429;RREB1:-0.568751262885;ATF5_CREB3:-0.580909485418;ATF2:-0.586967953241;POU5F1:-0.602261756148;NR1H4:-0.621428693055;FOX{F1,F2,J1}:-0.626631936988;ZNF148:-0.658819194043;TOPORS:-0.664685895321;TFDP1:-0.679587160592;FOXP1:-0.691079721491;E2F1..5:-0.694514747474;CUX2:-0.723403401932;TGIF1:-0.735440799335;GATA6:-0.789495613141;FOXO1,3,4:-0.797327301443;EGR1..3:-0.818521802785;SREBF1,2:-0.861373594492;RFX2..5_RFXANK_RFXAP:-0.881575550495;SP1:-0.903191868233;ATF4:-0.938139949694;STAT1,3:-0.941200128162;NR5A1,2:-0.976155856399;RORA:-0.995978335105;IRF7:-1.00723899868;MYOD1:-1.05154255807;PDX1:-1.07180012588;FOXN1:-1.13273546002;NANOG:-1.15601594546;PAX3,7:-1.18622121647;NFY{A,B,C}:-1.30204562688;FOXA2:-1.39233155104;BREu{core}:-1.54522580694;RBPJ:-1.55998955035;EP300:-1.76570255321;T:-1.86224655859 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12652-134H6;search_select_hide=table117:FF:12652-134H6 | |||
}} | }} |
Latest revision as of 18:41, 4 June 2020
Name: | Aortic smooth muscle cell response to IL1b |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13349 |
Sample type: | time courses |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13349
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13349
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.178 |
10 | 10 | 0.322 |
100 | 100 | 0.304 |
101 | 101 | 0.911 |
102 | 102 | 0.849 |
103 | 103 | 0.118 |
104 | 104 | 0.874 |
105 | 105 | 0.484 |
106 | 106 | 0.0323 |
107 | 107 | 0.125 |
108 | 108 | 0.257 |
109 | 109 | 0.202 |
11 | 11 | 0.0613 |
110 | 110 | 0.126 |
111 | 111 | 0.139 |
112 | 112 | 0.211 |
113 | 113 | 0.0622 |
114 | 114 | 0.0151 |
115 | 115 | 0.334 |
116 | 116 | 0.0596 |
117 | 117 | 0.182 |
118 | 118 | 0.552 |
119 | 119 | 0.195 |
12 | 12 | 0.818 |
120 | 120 | 0.0343 |
121 | 121 | 0.993 |
122 | 122 | 0.114 |
123 | 123 | 0.145 |
124 | 124 | 0.975 |
125 | 125 | 0.322 |
126 | 126 | 0.432 |
127 | 127 | 0.711 |
128 | 128 | 0.113 |
129 | 129 | 0.811 |
13 | 13 | 0.281 |
130 | 130 | 0.586 |
131 | 131 | 0.685 |
132 | 132 | 0.985 |
133 | 133 | 0.68 |
134 | 134 | 0.773 |
135 | 135 | 0.402 |
136 | 136 | 0.964 |
137 | 137 | 0.143 |
138 | 138 | 0.877 |
139 | 139 | 0.222 |
14 | 14 | 0.75 |
140 | 140 | 0.107 |
141 | 141 | 0.628 |
142 | 142 | 0.879 |
143 | 143 | 0.0308 |
144 | 144 | 0.259 |
145 | 145 | 0.288 |
146 | 146 | 0.848 |
147 | 147 | 0.196 |
148 | 148 | 0.0409 |
149 | 149 | 0.00802 |
15 | 15 | 0.442 |
150 | 150 | 0.217 |
151 | 151 | 0.666 |
152 | 152 | 0.079 |
153 | 153 | 0.723 |
154 | 154 | 0.678 |
155 | 155 | 0.109 |
156 | 156 | 0.923 |
157 | 157 | 0.182 |
158 | 158 | 0.0308 |
159 | 159 | 0.109 |
16 | 16 | 0.0546 |
160 | 160 | 0.0425 |
161 | 161 | 0.965 |
162 | 162 | 0.136 |
163 | 163 | 0.648 |
164 | 164 | 0.0247 |
165 | 165 | 0.916 |
166 | 166 | 0.439 |
167 | 167 | 0.486 |
168 | 168 | 0.605 |
169 | 169 | 0.0836 |
17 | 17 | 0.0786 |
18 | 18 | 0.0767 |
19 | 19 | 0.0541 |
2 | 2 | 0.576 |
20 | 20 | 0.954 |
21 | 21 | 0.451 |
22 | 22 | 0.576 |
23 | 23 | 0.163 |
24 | 24 | 0.775 |
25 | 25 | 0.554 |
26 | 26 | 0.228 |
27 | 27 | 0.253 |
28 | 28 | 0.345 |
29 | 29 | 0.158 |
3 | 3 | 0.117 |
30 | 30 | 0.905 |
31 | 31 | 0.514 |
32 | 32 | 3.88192e-5 |
33 | 33 | 0.375 |
34 | 34 | 0.652 |
35 | 35 | 0.0974 |
36 | 36 | 0.235 |
37 | 37 | 0.017 |
38 | 38 | 0.576 |
39 | 39 | 0.37 |
4 | 4 | 0.912 |
40 | 40 | 0.37 |
41 | 41 | 0.692 |
42 | 42 | 0.632 |
43 | 43 | 0.16 |
44 | 44 | 0.0502 |
45 | 45 | 0.741 |
46 | 46 | 0.0501 |
47 | 47 | 0.184 |
48 | 48 | 0.235 |
49 | 49 | 0.337 |
5 | 5 | 0.448 |
50 | 50 | 0.744 |
51 | 51 | 0.548 |
52 | 52 | 0.776 |
53 | 53 | 0.551 |
54 | 54 | 0.446 |
55 | 55 | 0.357 |
56 | 56 | 0.504 |
57 | 57 | 0.143 |
58 | 58 | 0.985 |
59 | 59 | 0.0408 |
6 | 6 | 0.63 |
60 | 60 | 0.388 |
61 | 61 | 0.617 |
62 | 62 | 0.274 |
63 | 63 | 0.223 |
64 | 64 | 0.799 |
65 | 65 | 0.144 |
66 | 66 | 0.78 |
67 | 67 | 0.284 |
68 | 68 | 0.805 |
69 | 69 | 0.43 |
7 | 7 | 0.933 |
70 | 70 | 0.0287 |
71 | 71 | 0.0888 |
72 | 72 | 0.512 |
73 | 73 | 0.0328 |
74 | 74 | 0.0581 |
75 | 75 | 0.235 |
76 | 76 | 0.375 |
77 | 77 | 0.0309 |
78 | 78 | 0.429 |
79 | 79 | 0.00318 |
8 | 8 | 0.019 |
80 | 80 | 0.568 |
81 | 81 | 0.245 |
82 | 82 | 0.0377 |
83 | 83 | 0.959 |
84 | 84 | 0.938 |
85 | 85 | 0.121 |
86 | 86 | 0.626 |
87 | 87 | 0.175 |
88 | 88 | 0.274 |
89 | 89 | 0.0332 |
9 | 9 | 0.481 |
90 | 90 | 0.0791 |
91 | 91 | 0.526 |
92 | 92 | 0.123 |
93 | 93 | 0.567 |
94 | 94 | 0.325 |
95 | 95 | 0.229 |
96 | 96 | 0.305 |
97 | 97 | 0.597 |
98 | 98 | 0.97 |
99 | 99 | 0.078 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13349
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000556 human Aortic Smooth Muscle cells 0min after treatment with IL1b sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000340 (IL1-beta treatment sample)
0000556 (human Aortic Smooth Muscle cells 0min after treatment with IL1b sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)