FF:493-3B3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005377 | ||
|accession_numbers=CAGE;DRX009150;DRR010024;DRZ001449;DRZ002832 | |accession_numbers=CAGE;DRX009150;DRR010024;DRZ001449;DRZ002832;DRZ012799;DRZ014182 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
| Line 9: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr13:83643159..83643226,+!p3@Mef2c!1.51!31.11!Mef2c;;chr2:120365588..120365602,-!p2@Zfp106!1.38!38.36!Zfp106;;chr1:136186574..136186592,+!p1@Myog!1.33!20.35!Myog;;chr5:77543897..77543911,-!p2@Hopx!1.32!37.90!Hopx;;chr11:121380640..121380655,-!p1@Zfp750!1.31!31.81!Zfp750;;chr3:99057269..99057306,+!p1@Tbx15!1.29!22.69!Tbx15;;chr7:6649134..6649167,-!p1@Zim1!1.28!96.61!Zim1;;chr12:34642510..34642530,+!p1@Twist1!1.28!57.08!Twist1;;chr4:87452200..87452229,-!p2@Mllt3!1.25!35.32!Mllt3;;chr16:25801993..25802014,+!p1@Trp63!1.24!16.38!Trp63;;chr6:55631042..55631102,-!p1@Neurod6!1.23!16.14!Neurod6;;chr10:88969376..88969395,-!p1@Nr1h4!1.22!15.44!Nr1h4;;chr13:72766250..72766273,+!p1@Irx2!1.21!23.39!Irx2;;chr10:106931775..106931798,-!p1@Myf6!1.19!14.50!Myf6;;chr3:3634145..3634161,+!p1@Hnf4g!1.16!13.33!Hnf4g;;chr10:22539932..22539956,-!p1@Tcf21!1.15!34.86!Tcf21;;chr10:80555320..80555378,-!p1@Creb3l3!1.15!15.44!Creb3l3;;chr13:40829137..40829205,-!p1@Tfap2a!1.14!14.27!Tfap2a;;chr4:87452180..87452196,-!p3@Mllt3!1.13!24.56!Mllt3;;chr1:179374784..179374800,+!p2@Zfp238!1.12!14.50!Zfp238;;chr10:12810631..12810649,+!p1@Plagl1!1.10!305.28!Plagl1;;chr11:94981424..94981439,+!p1@Dlx3!1.10!13.10!Dlx3;;chr12:74147689..74147711,-!p1@Six1!1.08!24.09!Six1;;chr4:135129538..135129558,-!p1@Grhl3!1.06!16.14!Grhl3;;chr19:5560600..5560617,-!p1@Ovol1!1.05!12.40!Ovol1;;chr9:31720843..31720888,-!p1@Barx2!1.05!11.46!Barx2;;chr9:43013917..43013968,-!p1@Pou2f3!1.02!9.36!Pou2f3;;chr11:121380594..121380609,-!p2@Zfp750!1.01!16.14!Zfp750;;chr17:44951553..44951586,-!p2@Runx2!1.01!10.29!Runx2;;chr7:17647736..17647772,-!p1@Hif3a!1.00!32.28!Hif3a;;chr15:103085660..103085681,-!p1@Nfe2!0.98!13.10!Nfe2;;chr15:102828658..102828678,+!p1@Hoxc6!0.98!8.66!Hoxc6;;chr12:37835141..37835194,+!p1@Meox2!0.97!26.20!Meox2;;chr12:37835120..37835133,+!p2@Meox2!0.97!12.16!Meox2;;chr1:169548377..169548430,+!p1@Rxrg!0.97!8.42!Rxrg;;chr15:102197405..102197454,-!p1@Sp7!0.96!8.19!Sp7;;chr2:9800207..9800234,-!p1@Gata3!0.95!24.80!Gata3;;chr3:99057677..99057730,+!p2@Tbx15!0.95!7.95!Tbx15;;chr8:87425854..87425891,+!p1@Klf1!0.95!7.95!Klf1;;chr1:165243591..165243625,-!p2@Prrx1!0.94!11.93!Prrx1;;chr10:106931839..106931851,-!p3@Myf6!0.94!7.72!Myf6;;chr2:79296783..79296801,-!p1@Neurod1!0.92!7.25!Neurod1;;chr5:148118639..148118715,-!p1@Cdx2!0.92!7.25!Cdx2;;chr7:119885539..119885574,+!p3@Tead1!0.92!7.25!Tead1;;chr2:103143336..103143367,-!p1@Ehf!0.90!11.46!Ehf;;chr11:98190918..98190951,-!p1@Neurod2!0.90!7.02!Neurod2;;chr2:65683890..65683907,+!p1@Csrnp3!0.89!13.33!Csrnp3;;chr13:55932591..55932622,-!p1@Pitx1!0.89!8.19!Pitx1;;chr12:30213247..30213333,+!p1@Myt1l!0.89!6.78!Myt1l;;chr9:91260594..91260612,-!p1@Zic1!0.88!6.55!Zic1;;chr3:95032091..95032183,-!p1@Mllt11!0.87!58.48!Mllt11;;chr12:109242266..109242295,-!p1@Bcl11b!0.87!56.85!Bcl11b;;chr1:137155026..137155042,-!p1@Elf3!0.87!39.53!Elf3;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!0.87!8.19!Pou3f3;;chr10:126778916..126778974,-!p1@Gli1!0.86!14.50!Gli1;;chr13:99124189..99124205,+!p1@Foxd1!0.86!9.83!Foxd1;;chr16:91270004..91270023,+!p1@Olig1!0.86!7.25!Olig1;;chr12:30219426..30219506,+!p2@Myt1l!0.86!6.32!Myt1l;;chr6:70906450..70906454,+!p1@Foxi3!0.86!6.32!Foxi3;;chr6:52190467..52190500,-!p1@Hoxa10!0.85!6.08!Hoxa10;;chr17:14011485..14011507,+!p2@Mllt4!0.85!6.08!Mllt4;;chr2:172375081..172375105,+!p1@Tfap2c!0.85!6.08!Tfap2c;;chr7:53631837..53631850,+!p1@Myod1!0.85!6.08!Myod1;;chr10:44178521..44178557,-!p1@Prdm1!0.84!10.99!Prdm1;;chr6:52176164..52176195,-!p1@Hoxa9!0.84!7.49!Hoxa9;;chr6:6832076..6832092,-!p1@Dlx5!0.84!7.02!Dlx5;;chr9:74709695..74709722,+!p1@Onecut1!0.84!5.85!Onecut1;;chr13:72101178..72101203,-!p1@Irx1!0.83!9.36!Irx1;;chr13:72766279..72766296,+!p2@Irx2!0.83!8.89!Irx2;;chr11:101755669..101755686,-!p1@Meox1!0.82!10.53!Meox1;;chr14:67853425..67853454,+!p1@Ebf2!0.82!8.19!Ebf2;;chr2:38206580..38206600,+!p2@Lhx2!0.82!7.02!Lhx2;;chr17:48015839..48015915,-!p3@Foxp4!0.82!6.78!Foxp4;;chr5:77543935..77543947,-!p4@Hopx!0.82!5.61!Hopx;;chr8:59799772..59799789,+!p1@Hand2!0.80!16.38!Hand2;;chr14:67853457..67853482,+!p2@Ebf2!0.80!7.72!Ebf2;;chr2:38206744..38206766,+!p1@Lhx2!0.80!6.55!Lhx2;;chr1:57028125..57028149,-!p2@Satb2!0.80!5.38!Satb2;;chr12:57796615..57796687,+!p1@Pax9!0.80!5.38!Pax9;;chr2:28477452..28477483,-!p1@Gfi1b!0.79!6.55!Gfi1b;;chr12:54349410..54349461,+!p1@Npas3!0.79!6.32!Npas3;;chr10:106923133..106923146,-!p1@Myf5!0.79!5.15!Myf5;;chr11:96143666..96143725,+!p1@Hoxb8!0.78!5.85!Hoxb8;;chr6:30908793..30908815,-!p1@Klf14!0.77!4.91!Klf14;;chr9:91260616..91260653,-!p2@Zic1!0.77!4.91!Zic1;;chr7:19608891..19608895,-!p1@Foxa3!0.76!6.32!Foxa3;;chr15:35225845..35225867,+!p1@Osr2!0.75!12.63!Osr2;;chr10:88996336..88996380,-!p2@Nr1h4!0.75!5.85!Nr1h4;;chr11:96880072..96880079,+!p1@Sp6!0.75!4.68!Sp6;;chr15:85566537..85566552,+!p2@Ppara!0.75!4.68!Ppara;;chr16:38294860..38294924,-!p1@Nr1i2!0.75!4.68!Nr1i2;;chr18:80909801..80909819,-!p1@Nfatc1!0.74!29.48!Nfatc1;;chr19:19185671..19185693,-!p1@Rorb!0.74!11.46!Rorb;;chr7:116154364..116154444,+!p1@Tub!0.74!8.19!Tub;;chr1:165243379..165243402,-!p3@Prrx1!0.74!7.02!Prrx1;;chr11:121380611..121380625,-!p3@Zfp750!0.74!5.61!Zfp750;;chr11:85699862..85699920,+!p1@Tbx4!0.74!4.44!Tbx4;;chr6:115372058..115372085,+!p3@Pparg!0.74!4.44!Pparg;;chr2:163372884..163372904,+!p1@Hnf4a!0.74!4.44!Hnf4a;;chr12:28027561..28027591,-!p1@Sox11!0.73!32.28!Sox11;;chr1:189821714..189821761,+!p1@Esrrg!0.73!8.66!Esrrg;;chr6:6831950..6831985,-!p2@Dlx5!0.73!4.91!Dlx5;;chr1:93698030..93698064,+!p1@Twist2!0.72!9.12!Twist2;;chr13:53568104..53568156,-!p1@Msx2!0.72!6.55!Msx2;;chr19:25746898..25746910,+!p1@Dmrt2!0.72!6.55!Dmrt2;;chr11:52096066..52096081,-!p2@Tcf7!0.72!5.38!Tcf7;;chr17:44951431..44951445,-!p3@Runx2!0.72!4.21!Runx2;;chr14:49287186..49287225,-!p1@Otx2!0.72!4.21!Otx2;;chr15:102196745..102196769,-!p2@Sp7!0.72!4.21!Sp7;;chr19:55969923..55969944,+!p6@Tcf7l2!0.72!4.21!Tcf7l2;;chr7:122989594..122989626,-!p1@Sox6!0.72!4.21!Sox6;;chr6:6831928..6831949,-!p3@Dlx5!0.72!4.21!Dlx5;;chr9:24578720..24578735,-!p1@Tbx20!0.72!4.21!Tbx20;;chr5:135582751..135582788,+!p1@Mlxipl!0.71!18.25!Mlxipl;;chr12:75002389..75002406,+!p4@Hif1a!0.70!3.98!Hif1a;;chr10:106931803..106931817,-!p2@Myf6!0.70!3.98!Myf6;;chr16:91225808..91225824,+!p1@Olig2!0.70!3.98!Olig2;;chr1:169528823..169528860,+!p5@Rxrg!0.70!3.98!Rxrg;;chr4:87452167..87452178,-!p8@Mllt3!0.70!3.98!Mllt3;;chr14:99697871..99697934,+!p1@Klf5!0.69!88.89!Klf5;;chr4:150482563..150482655,-!p2@Camta1!0.68!15.21!Camta1;;chr1:165243792..165243808,-!p1@Prrx1!0.68!14.97!Prrx1;;chr3:34548909..34548927,+!p1@Sox2!0.68!6.78!Sox2;;chrX:90531838..90531861,+!p1@Arx!0.68!4.91!Arx;;chr14:118636214..118636235,-!p1@Sox21!0.68!4.68!Sox21;;chr14:67853632..67853674,+!p3@Ebf2!0.68!4.68!Ebf2;;chr15:102751603..102751630,+!p1@Hoxc13!0.68!3.74!Hoxc13;;chr3:99057256..99057268,+!p3@Tbx15!0.68!3.74!Tbx15;;chr2:103264213..103264233,+!p1@Elf5!0.68!3.74!Elf5;;chr16:25684232..25684285,+!p2@Trp63!0.68!3.74!Trp63;;chr15:85566184..85566238,+!p1@Ppara!0.67!5.85!Ppara;;chr2:74542918..74542971,+!p1@Hoxd8!0.67!5.85!Hoxd8;;chr13:72101161..72101177,-!p2@Irx1!0.67!5.38!Irx1;;chr6:128250380..128250442,-!p2@Tead4!0.67!4.91!Tead4;;chr6:88143711..88143717,+!p2@Gata2!0.66!6.08!Gata2;;chr11:44430989..44431015,+!p4@Ebf1!0.65!6.78!Ebf1;;chr2:71384802..71384815,-!p1@Dlx2!0.65!4.44!Dlx2;;chr1:93698068..93698085,+!p2@Twist2!0.65!4.21!Twist2;;chr2:163332558..163332596,+!p2@Hnf4a!0.65!3.51!Hnf4a;;chr7:17642177..17642223,-!p3@Hif3a!0.65!3.51!Hif3a;;chr9:87626083..87626108,-!p1@Tbx18!0.64!8.19!Tbx18;;chr7:35904304..35904320,+!p1@Cebpa!0.63!78.37!Cebpa;;chr17:25707623..25707639,-!p1@Sox8!0.63!16.14!Sox8;;chr11:96153767..96153822,+!p1@Hoxb6!0.63!5.38!Hoxb6;;chr16:18587076..18587106,-!p1@Tbx1!0.63!4.91!Tbx1;;chr13:83643232..83643254,+!p5@Mef2c!0.63!3.28!Mef2c;;chr12:25257265..25257294,+!p2@Grhl1!0.63!3.28!Grhl1;;chr14:122874619..122874634,+!p1@Zic2!0.63!3.28!Zic2;;chr2:160192793..160192809,-!p1@Mafb!0.62!57.31!Mafb;;chr9:71743854..71743909,-!p1@Tcf12!0.62!29.71!Tcf12;;chr9:69137716..69137744,+!p1@Rora!0.62!23.63!Rora;;chr8:87297280..87297326,-!p2@Nfix!0.62!8.42!Nfix;;chr9:96159147..96159204,+!p2@Tfdp2!0.62!6.55!Tfdp2;;chr3:128916868..128916890,+!p1@Pitx2!0.62!4.68!Pitx2;;chr10:88145766..88145770,-!p1@Spic!0.61!4.21!Spic;;chr17:86087592..86087615,-!p1@Six2!0.61!3.04!Six2;;chr18:52775562..52775650,+!p1@Zfp474!0.61!3.04!Zfp474;;chr15:76352832..76352900,-!p1@Scrt1!0.61!3.04!Scrt1;;chr12:37835248..37835260,+!p4@Meox2!0.61!3.04!Meox2;;chr13:40825465..40825469,-!p2@Tfap2a!0.61!3.04!Tfap2a;;chr12:57636178..57636194,-!p2@Nkx2-1!0.61!3.04!Nkx2-1;;chr12:37835219..37835230,+!p5@Meox2!0.61!3.04!Meox2;;chrX:108009761..108009788,+!p1@Pou3f4!0.61!3.04!Pou3f4;;chr1:173144100..173144138,+!p2@Nr1i3!0.61!3.04!Nr1i3;;chr2:32229906..32229942,+!p3@Ciz1!0.61!3.04!Ciz1;;chr1:19199236..19199258,+!p1@Tfap2b!0.61!3.04!Tfap2b;;chr2:164228702..164228719,+!p1@Rbpjl!0.61!3.04!Rbpjl;;chr16:43363190..43363242,+!p2@Zbtb20!0.60!10.53!Zbtb20;;chr2:91864300..91864379,-!p2@Creb3l1!0.60!9.83!Creb3l1;;chr1:14746065..14746079,-!p1@Msc!0.60!3.74!Msc;;chr1:57029281..57029326,-!p1@Satb2!0.59!4.91!Satb2;;chr11:116196664..116196679,-!p1@Foxj1!0.59!4.91!Foxj1;;chr13:30841099..30841116,+!p1@Irf4!0.59!4.91!Irf4;;chr8:123608252..123608268,+!p1@Foxf1a!0.59!4.68!Foxf1a;;chr5:24107903..24107917,-!p6@Smarcd3!0.59!3.74!Smarcd3;;chr7:144505957..144505972,-!p2@Ebf3!0.59!3.74!Ebf3;;chr2:180069370..180069409,-!p1@Gata5!0.59!3.51!Gata5;;chr4:55545337..55545357,-!p1@Klf4!0.58!50.76!Klf4;;chr15:97738692..97738747,-!p1@Vdr!0.58!18.71!Vdr;;chr4:154335024..154335039,+!p1@Hes5!0.58!3.51!Hes5;;chr4:46356509..46356527,+!p1@Foxe1!0.58!2.81!Foxe1;;chr17:27865882..27865901,-!p1@Spdef!0.58!2.81!Spdef;;chr1:19199021..19199048,+!p8@Tfap2b!0.58!2.81!Tfap2b;;chr1:169528720..169528749,+!p6@Rxrg!0.58!2.81!Rxrg;;chr2:147871627..147871641,-!p1@Foxa2!0.58!2.81!Foxa2;;chr2:61642631..61642684,+!p1@Tbr1!0.58!2.81!Tbr1;;chr1:78193687..78193692,-!p1@Pax3!0.58!2.81!Pax3;;chr5:98609885..98609900,+!p1@Prdm8!0.58!2.81!Prdm8;;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| |expression_enrichment_score=chr13:83643159..83643226,+!p3@Mef2c!1.51!31.11!Mef2c;;chr2:120365588..120365602,-!p2@Zfp106!1.38!38.36!Zfp106;;chr1:136186574..136186592,+!p1@Myog!1.33!20.35!Myog;;chr5:77543897..77543911,-!p2@Hopx!1.32!37.90!Hopx;;chr11:121380640..121380655,-!p1@Zfp750!1.31!31.81!Zfp750;;chr3:99057269..99057306,+!p1@Tbx15!1.29!22.69!Tbx15;;chr7:6649134..6649167,-!p1@Zim1!1.28!96.61!Zim1;;chr12:34642510..34642530,+!p1@Twist1!1.28!57.08!Twist1;;chr4:87452200..87452229,-!p2@Mllt3!1.25!35.32!Mllt3;;chr16:25801993..25802014,+!p1@Trp63!1.24!16.38!Trp63;;chr6:55631042..55631102,-!p1@Neurod6!1.23!16.14!Neurod6;;chr10:88969376..88969395,-!p1@Nr1h4!1.22!15.44!Nr1h4;;chr13:72766250..72766273,+!p1@Irx2!1.21!23.39!Irx2;;chr10:106931775..106931798,-!p1@Myf6!1.19!14.50!Myf6;;chr3:3634145..3634161,+!p1@Hnf4g!1.16!13.33!Hnf4g;;chr10:22539932..22539956,-!p1@Tcf21!1.15!34.86!Tcf21;;chr10:80555320..80555378,-!p1@Creb3l3!1.15!15.44!Creb3l3;;chr13:40829137..40829205,-!p1@Tfap2a!1.14!14.27!Tfap2a;;chr4:87452180..87452196,-!p3@Mllt3!1.13!24.56!Mllt3;;chr1:179374784..179374800,+!p2@Zfp238!1.12!14.50!Zfp238;;chr10:12810631..12810649,+!p1@Plagl1!1.10!305.28!Plagl1;;chr11:94981424..94981439,+!p1@Dlx3!1.10!13.10!Dlx3;;chr12:74147689..74147711,-!p1@Six1!1.08!24.09!Six1;;chr4:135129538..135129558,-!p1@Grhl3!1.06!16.14!Grhl3;;chr19:5560600..5560617,-!p1@Ovol1!1.05!12.40!Ovol1;;chr9:31720843..31720888,-!p1@Barx2!1.05!11.46!Barx2;;chr9:43013917..43013968,-!p1@Pou2f3!1.02!9.36!Pou2f3;;chr11:121380594..121380609,-!p2@Zfp750!1.01!16.14!Zfp750;;chr17:44951553..44951586,-!p2@Runx2!1.01!10.29!Runx2;;chr7:17647736..17647772,-!p1@Hif3a!1.00!32.28!Hif3a;;chr15:103085660..103085681,-!p1@Nfe2!0.98!13.10!Nfe2;;chr15:102828658..102828678,+!p1@Hoxc6!0.98!8.66!Hoxc6;;chr12:37835141..37835194,+!p1@Meox2!0.97!26.20!Meox2;;chr12:37835120..37835133,+!p2@Meox2!0.97!12.16!Meox2;;chr1:169548377..169548430,+!p1@Rxrg!0.97!8.42!Rxrg;;chr15:102197405..102197454,-!p1@Sp7!0.96!8.19!Sp7;;chr2:9800207..9800234,-!p1@Gata3!0.95!24.80!Gata3;;chr3:99057677..99057730,+!p2@Tbx15!0.95!7.95!Tbx15;;chr8:87425854..87425891,+!p1@Klf1!0.95!7.95!Klf1;;chr1:165243591..165243625,-!p2@Prrx1!0.94!11.93!Prrx1;;chr10:106931839..106931851,-!p3@Myf6!0.94!7.72!Myf6;;chr2:79296783..79296801,-!p1@Neurod1!0.92!7.25!Neurod1;;chr5:148118639..148118715,-!p1@Cdx2!0.92!7.25!Cdx2;;chr7:119885539..119885574,+!p3@Tead1!0.92!7.25!Tead1;;chr2:103143336..103143367,-!p1@Ehf!0.90!11.46!Ehf;;chr11:98190918..98190951,-!p1@Neurod2!0.90!7.02!Neurod2;;chr2:65683890..65683907,+!p1@Csrnp3!0.89!13.33!Csrnp3;;chr13:55932591..55932622,-!p1@Pitx1!0.89!8.19!Pitx1;;chr12:30213247..30213333,+!p1@Myt1l!0.89!6.78!Myt1l;;chr9:91260594..91260612,-!p1@Zic1!0.88!6.55!Zic1;;chr3:95032091..95032183,-!p1@Mllt11!0.87!58.48!Mllt11;;chr12:109242266..109242295,-!p1@Bcl11b!0.87!56.85!Bcl11b;;chr1:137155026..137155042,-!p1@Elf3!0.87!39.53!Elf3;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!0.87!8.19!Pou3f3;;chr10:126778916..126778974,-!p1@Gli1!0.86!14.50!Gli1;;chr13:99124189..99124205,+!p1@Foxd1!0.86!9.83!Foxd1;;chr16:91270004..91270023,+!p1@Olig1!0.86!7.25!Olig1;;chr12:30219426..30219506,+!p2@Myt1l!0.86!6.32!Myt1l;;chr6:70906450..70906454,+!p1@Foxi3!0.86!6.32!Foxi3;;chr6:52190467..52190500,-!p1@Hoxa10!0.85!6.08!Hoxa10;;chr17:14011485..14011507,+!p2@Mllt4!0.85!6.08!Mllt4;;chr2:172375081..172375105,+!p1@Tfap2c!0.85!6.08!Tfap2c;;chr7:53631837..53631850,+!p1@Myod1!0.85!6.08!Myod1;;chr10:44178521..44178557,-!p1@Prdm1!0.84!10.99!Prdm1;;chr6:52176164..52176195,-!p1@Hoxa9!0.84!7.49!Hoxa9;;chr6:6832076..6832092,-!p1@Dlx5!0.84!7.02!Dlx5;;chr9:74709695..74709722,+!p1@Onecut1!0.84!5.85!Onecut1;;chr13:72101178..72101203,-!p1@Irx1!0.83!9.36!Irx1;;chr13:72766279..72766296,+!p2@Irx2!0.83!8.89!Irx2;;chr11:101755669..101755686,-!p1@Meox1!0.82!10.53!Meox1;;chr14:67853425..67853454,+!p1@Ebf2!0.82!8.19!Ebf2;;chr2:38206580..38206600,+!p2@Lhx2!0.82!7.02!Lhx2;;chr17:48015839..48015915,-!p3@Foxp4!0.82!6.78!Foxp4;;chr5:77543935..77543947,-!p4@Hopx!0.82!5.61!Hopx;;chr8:59799772..59799789,+!p1@Hand2!0.80!16.38!Hand2;;chr14:67853457..67853482,+!p2@Ebf2!0.80!7.72!Ebf2;;chr2:38206744..38206766,+!p1@Lhx2!0.80!6.55!Lhx2;;chr1:57028125..57028149,-!p2@Satb2!0.80!5.38!Satb2;;chr12:57796615..57796687,+!p1@Pax9!0.80!5.38!Pax9;;chr2:28477452..28477483,-!p1@Gfi1b!0.79!6.55!Gfi1b;;chr12:54349410..54349461,+!p1@Npas3!0.79!6.32!Npas3;;chr10:106923133..106923146,-!p1@Myf5!0.79!5.15!Myf5;;chr11:96143666..96143725,+!p1@Hoxb8!0.78!5.85!Hoxb8;;chr6:30908793..30908815,-!p1@Klf14!0.77!4.91!Klf14;;chr9:91260616..91260653,-!p2@Zic1!0.77!4.91!Zic1;;chr7:19608891..19608895,-!p1@Foxa3!0.76!6.32!Foxa3;;chr15:35225845..35225867,+!p1@Osr2!0.75!12.63!Osr2;;chr10:88996336..88996380,-!p2@Nr1h4!0.75!5.85!Nr1h4;;chr11:96880072..96880079,+!p1@Sp6!0.75!4.68!Sp6;;chr15:85566537..85566552,+!p2@Ppara!0.75!4.68!Ppara;;chr16:38294860..38294924,-!p1@Nr1i2!0.75!4.68!Nr1i2;;chr18:80909801..80909819,-!p1@Nfatc1!0.74!29.48!Nfatc1;;chr19:19185671..19185693,-!p1@Rorb!0.74!11.46!Rorb;;chr7:116154364..116154444,+!p1@Tub!0.74!8.19!Tub;;chr1:165243379..165243402,-!p3@Prrx1!0.74!7.02!Prrx1;;chr11:121380611..121380625,-!p3@Zfp750!0.74!5.61!Zfp750;;chr11:85699862..85699920,+!p1@Tbx4!0.74!4.44!Tbx4;;chr6:115372058..115372085,+!p3@Pparg!0.74!4.44!Pparg;;chr2:163372884..163372904,+!p1@Hnf4a!0.74!4.44!Hnf4a;;chr12:28027561..28027591,-!p1@Sox11!0.73!32.28!Sox11;;chr1:189821714..189821761,+!p1@Esrrg!0.73!8.66!Esrrg;;chr6:6831950..6831985,-!p2@Dlx5!0.73!4.91!Dlx5;;chr1:93698030..93698064,+!p1@Twist2!0.72!9.12!Twist2;;chr13:53568104..53568156,-!p1@Msx2!0.72!6.55!Msx2;;chr19:25746898..25746910,+!p1@Dmrt2!0.72!6.55!Dmrt2;;chr11:52096066..52096081,-!p2@Tcf7!0.72!5.38!Tcf7;;chr17:44951431..44951445,-!p3@Runx2!0.72!4.21!Runx2;;chr14:49287186..49287225,-!p1@Otx2!0.72!4.21!Otx2;;chr15:102196745..102196769,-!p2@Sp7!0.72!4.21!Sp7;;chr19:55969923..55969944,+!p6@Tcf7l2!0.72!4.21!Tcf7l2;;chr7:122989594..122989626,-!p1@Sox6!0.72!4.21!Sox6;;chr6:6831928..6831949,-!p3@Dlx5!0.72!4.21!Dlx5;;chr9:24578720..24578735,-!p1@Tbx20!0.72!4.21!Tbx20;;chr5:135582751..135582788,+!p1@Mlxipl!0.71!18.25!Mlxipl;;chr12:75002389..75002406,+!p4@Hif1a!0.70!3.98!Hif1a;;chr10:106931803..106931817,-!p2@Myf6!0.70!3.98!Myf6;;chr16:91225808..91225824,+!p1@Olig2!0.70!3.98!Olig2;;chr1:169528823..169528860,+!p5@Rxrg!0.70!3.98!Rxrg;;chr4:87452167..87452178,-!p8@Mllt3!0.70!3.98!Mllt3;;chr14:99697871..99697934,+!p1@Klf5!0.69!88.89!Klf5;;chr4:150482563..150482655,-!p2@Camta1!0.68!15.21!Camta1;;chr1:165243792..165243808,-!p1@Prrx1!0.68!14.97!Prrx1;;chr3:34548909..34548927,+!p1@Sox2!0.68!6.78!Sox2;;chrX:90531838..90531861,+!p1@Arx!0.68!4.91!Arx;;chr14:118636214..118636235,-!p1@Sox21!0.68!4.68!Sox21;;chr14:67853632..67853674,+!p3@Ebf2!0.68!4.68!Ebf2;;chr15:102751603..102751630,+!p1@Hoxc13!0.68!3.74!Hoxc13;;chr3:99057256..99057268,+!p3@Tbx15!0.68!3.74!Tbx15;;chr2:103264213..103264233,+!p1@Elf5!0.68!3.74!Elf5;;chr16:25684232..25684285,+!p2@Trp63!0.68!3.74!Trp63;;chr15:85566184..85566238,+!p1@Ppara!0.67!5.85!Ppara;;chr2:74542918..74542971,+!p1@Hoxd8!0.67!5.85!Hoxd8;;chr13:72101161..72101177,-!p2@Irx1!0.67!5.38!Irx1;;chr6:128250380..128250442,-!p2@Tead4!0.67!4.91!Tead4;;chr6:88143711..88143717,+!p2@Gata2!0.66!6.08!Gata2;;chr11:44430989..44431015,+!p4@Ebf1!0.65!6.78!Ebf1;;chr2:71384802..71384815,-!p1@Dlx2!0.65!4.44!Dlx2;;chr1:93698068..93698085,+!p2@Twist2!0.65!4.21!Twist2;;chr2:163332558..163332596,+!p2@Hnf4a!0.65!3.51!Hnf4a;;chr7:17642177..17642223,-!p3@Hif3a!0.65!3.51!Hif3a;;chr9:87626083..87626108,-!p1@Tbx18!0.64!8.19!Tbx18;;chr7:35904304..35904320,+!p1@Cebpa!0.63!78.37!Cebpa;;chr17:25707623..25707639,-!p1@Sox8!0.63!16.14!Sox8;;chr11:96153767..96153822,+!p1@Hoxb6!0.63!5.38!Hoxb6;;chr16:18587076..18587106,-!p1@Tbx1!0.63!4.91!Tbx1;;chr13:83643232..83643254,+!p5@Mef2c!0.63!3.28!Mef2c;;chr12:25257265..25257294,+!p2@Grhl1!0.63!3.28!Grhl1;;chr14:122874619..122874634,+!p1@Zic2!0.63!3.28!Zic2;;chr2:160192793..160192809,-!p1@Mafb!0.62!57.31!Mafb;;chr9:71743854..71743909,-!p1@Tcf12!0.62!29.71!Tcf12;;chr9:69137716..69137744,+!p1@Rora!0.62!23.63!Rora;;chr8:87297280..87297326,-!p2@Nfix!0.62!8.42!Nfix;;chr9:96159147..96159204,+!p2@Tfdp2!0.62!6.55!Tfdp2;;chr3:128916868..128916890,+!p1@Pitx2!0.62!4.68!Pitx2;;chr10:88145766..88145770,-!p1@Spic!0.61!4.21!Spic;;chr17:86087592..86087615,-!p1@Six2!0.61!3.04!Six2;;chr18:52775562..52775650,+!p1@Zfp474!0.61!3.04!Zfp474;;chr15:76352832..76352900,-!p1@Scrt1!0.61!3.04!Scrt1;;chr12:37835248..37835260,+!p4@Meox2!0.61!3.04!Meox2;;chr13:40825465..40825469,-!p2@Tfap2a!0.61!3.04!Tfap2a;;chr12:57636178..57636194,-!p2@Nkx2-1!0.61!3.04!Nkx2-1;;chr12:37835219..37835230,+!p5@Meox2!0.61!3.04!Meox2;;chrX:108009761..108009788,+!p1@Pou3f4!0.61!3.04!Pou3f4;;chr1:173144100..173144138,+!p2@Nr1i3!0.61!3.04!Nr1i3;;chr2:32229906..32229942,+!p3@Ciz1!0.61!3.04!Ciz1;;chr1:19199236..19199258,+!p1@Tfap2b!0.61!3.04!Tfap2b;;chr2:164228702..164228719,+!p1@Rbpjl!0.61!3.04!Rbpjl;;chr16:43363190..43363242,+!p2@Zbtb20!0.60!10.53!Zbtb20;;chr2:91864300..91864379,-!p2@Creb3l1!0.60!9.83!Creb3l1;;chr1:14746065..14746079,-!p1@Msc!0.60!3.74!Msc;;chr1:57029281..57029326,-!p1@Satb2!0.59!4.91!Satb2;;chr11:116196664..116196679,-!p1@Foxj1!0.59!4.91!Foxj1;;chr13:30841099..30841116,+!p1@Irf4!0.59!4.91!Irf4;;chr8:123608252..123608268,+!p1@Foxf1a!0.59!4.68!Foxf1a;;chr5:24107903..24107917,-!p6@Smarcd3!0.59!3.74!Smarcd3;;chr7:144505957..144505972,-!p2@Ebf3!0.59!3.74!Ebf3;;chr2:180069370..180069409,-!p1@Gata5!0.59!3.51!Gata5;;chr4:55545337..55545357,-!p1@Klf4!0.58!50.76!Klf4;;chr15:97738692..97738747,-!p1@Vdr!0.58!18.71!Vdr;;chr4:154335024..154335039,+!p1@Hes5!0.58!3.51!Hes5;;chr4:46356509..46356527,+!p1@Foxe1!0.58!2.81!Foxe1;;chr17:27865882..27865901,-!p1@Spdef!0.58!2.81!Spdef;;chr1:19199021..19199048,+!p8@Tfap2b!0.58!2.81!Tfap2b;;chr1:169528720..169528749,+!p6@Rxrg!0.58!2.81!Rxrg;;chr2:147871627..147871641,-!p1@Foxa2!0.58!2.81!Foxa2;;chr2:61642631..61642684,+!p1@Tbr1!0.58!2.81!Tbr1;;chr1:78193687..78193692,-!p1@Pax3!0.58!2.81!Pax3;;chr5:98609885..98609900,+!p1@Prdm8!0.58!2.81!Prdm8;;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| ||
| Line 44: | Line 45: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10516 | |library_id=CNhs10516 | ||
| | |library_id_phase_based=2:CNhs10516 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;493 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;493 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E18.CNhs10516.493-3B3.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E18.CNhs10516.493-3B3.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E18.CNhs10516.493-3B3.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E18.CNhs10516.493-3B3.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/whole%2520body%252c%2520embryo%2520E18.CNhs10516.493-3B3.mm9.nobarcode.rdna.fa.gz | |||
|name=whole body, embryo E18 | |name=whole body, embryo E18 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 50: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10516,LSID649,release008,COMPLETED | |profile_hcage=CNhs10516,LSID649,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.0712719386549424,0,0.000640895552829355,0,0,0,0.539798803310046,0,0,0,0,0.889782559288177,0,0,0,0,0,0,0.144497939612722,0,0,0,0.166685587652774,0,0,0,0,0,0,0,0,0,0.195820946021848,0,0,0,0.336391290495296,0.0572323744451195,0.0495528642404207,0.0551848688945237,0.0914371474599496,0.758294859483556,0.253788891327686,0,0,0,0,0,0,0,0,0,0,0,0,0.0252855417141047,0.166685587652774,0,0,0,0.0249808870575589,0,0.091291089277545,0.00812675365090545,0,0.0561345253846175,0.0336332866260219,-0.219359568061841,0.472849395671665,-0.0207521804440522,0.166685587652774,0.205107870535168,0.0674066957383862,0.0408118519241156,0,0,0.074821626640283,-0.0229189143702139,0.035025557702178,0.0878539928128669,0,0,0,0,0,0,-0.0546806625784358,-0.229666878948966,-0.10870385821293,0,0,0,0,0 | |repeat_enrich_byfamily=0.0712719386549424,0,0.000640895552829355,0,0,0,0.539798803310046,0,0,0,0,0.889782559288177,0,0,0,0,0,0,0.144497939612722,0,0,0,0.166685587652774,0,0,0,0,0,0,0,0,0,0.195820946021848,0,0,0,0.336391290495296,0.0572323744451195,0.0495528642404207,0.0551848688945237,0.0914371474599496,0.758294859483556,0.253788891327686,0,0,0,0,0,0,0,0,0,0,0,0,0.0252855417141047,0.166685587652774,0,0,0,0.0249808870575589,0,0.091291089277545,0.00812675365090545,0,0.0561345253846175,0.0336332866260219,-0.219359568061841,0.472849395671665,-0.0207521804440522,0.166685587652774,0.205107870535168,0.0674066957383862,0.0408118519241156,0,0,0.074821626640283,-0.0229189143702139,0.035025557702178,0.0878539928128669,0,0,0,0,0,0,-0.0546806625784358,-0.229666878948966,-0.10870385821293,0,0,0,0,0 | ||
| Line 87: | Line 97: | ||
|top_motifs=TBP:2.86600813357;HOX{A4,D4}:2.67568015851;NKX3-2:2.0808416266;NKX2-3_NKX2-5:1.83893883069;TFAP4:1.71359650873;T:1.68993138035;TFCP2:1.64537371677;FOXL1:1.6292187109;ZNF148:1.59889325352;SMAD1..7,9:1.57327870773;MYOD1:1.53657091561;TLX2:1.51806256169;FOXA2:1.51508742776;TGIF1:1.44959975705;MEF2{A,B,C,D}:1.44409796952;EBF1:1.41981232503;LEF1_TCF7_TCF7L1,2:1.41872202033;MYFfamily:1.40931513062;ZNF238:1.40028015731;FOSL2:1.31922530467;MAFB:1.31834391644;ESR1:1.31499773897;MAZ:1.29180563739;HMX1:1.23103561426;GCM1,2:1.22057499682;GLI1..3:1.21924891431;EP300:1.1926237759;PAX1,9:1.17576730167;FOX{F1,F2,J1}:1.17268109708;HOX{A5,B5}:1.17180003282;GTF2I:1.13928735675;FOX{D1,D2}:1.13046350778;TLX1..3_NFIC{dimer}:1.09982364404;XCPE1{core}:1.0820121762;SRF:1.08018458531;FOS_FOS{B,L1}_JUN{B,D}:1.05856246972;NFIX:1.03103654114;TAL1_TCF{3,4,12}:1.010684622;TOPORS:0.982131610711;VSX1,2:0.963746659578;TEAD1:0.960314589921;GFI1B:0.952267104528;TBX4,5:0.949804146781;SNAI1..3:0.944608356362;HNF1A:0.941156033402;EN1,2:0.940184659525;HLF:0.925195951602;SOX{8,9,10}:0.915844019838;NKX2-1,4:0.914424877358;MZF1:0.869087659047;NHLH1,2:0.858983384791;PATZ1:0.851720753168;SP1:0.810238738896;MYBL2:0.80186559755;RXRA_VDR{dimer}:0.795644045896;LHX3,4:0.795258813785;PAX5:0.791187379408;CUX2:0.764626170226;IKZF1:0.758894509679;GFI1:0.754626628426;GATA6:0.739584603725;PAX6:0.731513014607;TFAP2{A,C}:0.72632142781;DBP:0.714077694291;MTF1:0.709137488857;PRDM1:0.707708054578;CEBPA,B_DDIT3:0.702625401086;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.698554795305;RBPJ:0.676141814219;RREB1:0.663422768355;HNF4A_NR2F1,2:0.661099207538;ATF6:0.624779021126;NR5A1,2:0.620174934276;PBX1:0.595652284544;GTF2A1,2:0.590945005457;NANOG:0.535743558502;POU5F1:0.534482299871;NR1H4:0.527328679275;KLF4:0.522538115013;LMO2:0.52126108831;ESRRA:0.517967257315;TP53:0.441421988357;REST:0.392435130488;SOX5:0.391679411863;HSF1,2:0.387485908394;STAT2,4,6:0.373419949309;HIC1:0.328128408693;ZNF423:0.314359907422;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.311409735773;POU6F1:0.306708259269;NFE2L2:0.284843637412;GATA4:0.284654780999;CRX:0.280225156762;NFATC1..3:0.271052262542;ADNP_IRX_SIX_ZHX:0.261119702882;GZF1:0.25527540228;ATF2:0.248129463657;MED-1{core}:0.241526884783;EGR1..3:0.233326212079;IRF7:0.222744799557;PRRX1,2:0.219550870819;ZIC1..3:0.218116751791;POU3F1..4:0.211793987558;ZEB1:0.185565519837;TFAP2B:0.178489456987;NANOG{mouse}:0.177711016584;ALX1:0.175400873173;HBP1_HMGB_SSRP1_UBTF:0.169596704053;PAX2:0.15605975232;ZBTB6:0.130750451448;NFIL3:0.126594255244;MTE{core}:0.096830069546;HIF1A:0.0891026340216;NFE2:0.0731539712636;HOXA9_MEIS1:0.0731276734365;SOX2:0.0678679223103;RFX2..5_RFXANK_RFXAP:0.0260423978975;AR:-0.00380688362208;OCT4_SOX2{dimer}:-0.00763977969428;BREu{core}:-0.0098349771346;FOXO1,3,4:-0.0203784956087;IKZF2:-0.0224949369856;SPZ1:-0.03603279649;FOXP3:-0.0661525447395;HMGA1,2:-0.0799705996152;PITX1..3:-0.0825198266907;RFX1:-0.127944942922;ONECUT1,2:-0.13686085635;SOX17:-0.139398534188;NKX2-2,8:-0.143605834718;ZFP161:-0.143984521138;CDC5L:-0.161435727669;DMAP1_NCOR{1,2}_SMARC:-0.166479910233;TFDP1:-0.184930290953;JUN:-0.225494079707;PPARG:-0.238061506541;PAX4:-0.26175595645;E2F1..5:-0.262217686141;POU1F1:-0.273241800432;PDX1:-0.273980861074;FOXP1:-0.2747032797;SPI1:-0.278936008874;HES1:-0.287174760143;FOXQ1:-0.299975878048;EVI1:-0.304692528029;RORA:-0.313176429482;BACH2:-0.313586779505;NR3C1:-0.329798600183;ETS1,2:-0.359740426795;POU2F1..3:-0.365431985341;UFEwm:-0.367974304975;AHR_ARNT_ARNT2:-0.373827545303;NFY{A,B,C}:-0.383709664823;FOXM1:-0.406665494514;NKX3-1:-0.424628131505;RUNX1..3:-0.430605149196;STAT5{A,B}:-0.436449613124;NFKB1_REL_RELA:-0.454526055992;IRF1,2:-0.455393834483;HAND1,2:-0.458967052965;SREBF1,2:-0.509709000017;ALX4:-0.528918927906;SPIB:-0.53166228206;PAX8:-0.555415377183;ZNF143:-0.562695579785;NKX6-1,2:-0.56344973023;FOXN1:-0.586929115083;ZNF384:-0.597815106508;NR6A1:-0.63442252091;RXR{A,B,G}:-0.669830024855;MYB:-0.671531377646;AIRE:-0.690235546789;ELF1,2,4:-0.739752192425;bHLH_family:-0.758555500905;BPTF:-0.772705408527;NRF1:-0.773989717625;ATF5_CREB3:-0.826886517151;FOXD3:-0.847177979057;NFE2L1:-0.862284310734;FOX{I1,J2}:-0.881357806688;YY1:-0.976856695454;CREB1:-1.03262472731;TEF:-1.10301675841;ATF4:-1.1213943127;CDX1,2,4:-1.2137428412;ARID5B:-1.28136382811;STAT1,3:-1.55089744689;ELK1,4_GABP{A,B1}:-1.61754763109;ZBTB16:-2.39757054826 | |top_motifs=TBP:2.86600813357;HOX{A4,D4}:2.67568015851;NKX3-2:2.0808416266;NKX2-3_NKX2-5:1.83893883069;TFAP4:1.71359650873;T:1.68993138035;TFCP2:1.64537371677;FOXL1:1.6292187109;ZNF148:1.59889325352;SMAD1..7,9:1.57327870773;MYOD1:1.53657091561;TLX2:1.51806256169;FOXA2:1.51508742776;TGIF1:1.44959975705;MEF2{A,B,C,D}:1.44409796952;EBF1:1.41981232503;LEF1_TCF7_TCF7L1,2:1.41872202033;MYFfamily:1.40931513062;ZNF238:1.40028015731;FOSL2:1.31922530467;MAFB:1.31834391644;ESR1:1.31499773897;MAZ:1.29180563739;HMX1:1.23103561426;GCM1,2:1.22057499682;GLI1..3:1.21924891431;EP300:1.1926237759;PAX1,9:1.17576730167;FOX{F1,F2,J1}:1.17268109708;HOX{A5,B5}:1.17180003282;GTF2I:1.13928735675;FOX{D1,D2}:1.13046350778;TLX1..3_NFIC{dimer}:1.09982364404;XCPE1{core}:1.0820121762;SRF:1.08018458531;FOS_FOS{B,L1}_JUN{B,D}:1.05856246972;NFIX:1.03103654114;TAL1_TCF{3,4,12}:1.010684622;TOPORS:0.982131610711;VSX1,2:0.963746659578;TEAD1:0.960314589921;GFI1B:0.952267104528;TBX4,5:0.949804146781;SNAI1..3:0.944608356362;HNF1A:0.941156033402;EN1,2:0.940184659525;HLF:0.925195951602;SOX{8,9,10}:0.915844019838;NKX2-1,4:0.914424877358;MZF1:0.869087659047;NHLH1,2:0.858983384791;PATZ1:0.851720753168;SP1:0.810238738896;MYBL2:0.80186559755;RXRA_VDR{dimer}:0.795644045896;LHX3,4:0.795258813785;PAX5:0.791187379408;CUX2:0.764626170226;IKZF1:0.758894509679;GFI1:0.754626628426;GATA6:0.739584603725;PAX6:0.731513014607;TFAP2{A,C}:0.72632142781;DBP:0.714077694291;MTF1:0.709137488857;PRDM1:0.707708054578;CEBPA,B_DDIT3:0.702625401086;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.698554795305;RBPJ:0.676141814219;RREB1:0.663422768355;HNF4A_NR2F1,2:0.661099207538;ATF6:0.624779021126;NR5A1,2:0.620174934276;PBX1:0.595652284544;GTF2A1,2:0.590945005457;NANOG:0.535743558502;POU5F1:0.534482299871;NR1H4:0.527328679275;KLF4:0.522538115013;LMO2:0.52126108831;ESRRA:0.517967257315;TP53:0.441421988357;REST:0.392435130488;SOX5:0.391679411863;HSF1,2:0.387485908394;STAT2,4,6:0.373419949309;HIC1:0.328128408693;ZNF423:0.314359907422;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.311409735773;POU6F1:0.306708259269;NFE2L2:0.284843637412;GATA4:0.284654780999;CRX:0.280225156762;NFATC1..3:0.271052262542;ADNP_IRX_SIX_ZHX:0.261119702882;GZF1:0.25527540228;ATF2:0.248129463657;MED-1{core}:0.241526884783;EGR1..3:0.233326212079;IRF7:0.222744799557;PRRX1,2:0.219550870819;ZIC1..3:0.218116751791;POU3F1..4:0.211793987558;ZEB1:0.185565519837;TFAP2B:0.178489456987;NANOG{mouse}:0.177711016584;ALX1:0.175400873173;HBP1_HMGB_SSRP1_UBTF:0.169596704053;PAX2:0.15605975232;ZBTB6:0.130750451448;NFIL3:0.126594255244;MTE{core}:0.096830069546;HIF1A:0.0891026340216;NFE2:0.0731539712636;HOXA9_MEIS1:0.0731276734365;SOX2:0.0678679223103;RFX2..5_RFXANK_RFXAP:0.0260423978975;AR:-0.00380688362208;OCT4_SOX2{dimer}:-0.00763977969428;BREu{core}:-0.0098349771346;FOXO1,3,4:-0.0203784956087;IKZF2:-0.0224949369856;SPZ1:-0.03603279649;FOXP3:-0.0661525447395;HMGA1,2:-0.0799705996152;PITX1..3:-0.0825198266907;RFX1:-0.127944942922;ONECUT1,2:-0.13686085635;SOX17:-0.139398534188;NKX2-2,8:-0.143605834718;ZFP161:-0.143984521138;CDC5L:-0.161435727669;DMAP1_NCOR{1,2}_SMARC:-0.166479910233;TFDP1:-0.184930290953;JUN:-0.225494079707;PPARG:-0.238061506541;PAX4:-0.26175595645;E2F1..5:-0.262217686141;POU1F1:-0.273241800432;PDX1:-0.273980861074;FOXP1:-0.2747032797;SPI1:-0.278936008874;HES1:-0.287174760143;FOXQ1:-0.299975878048;EVI1:-0.304692528029;RORA:-0.313176429482;BACH2:-0.313586779505;NR3C1:-0.329798600183;ETS1,2:-0.359740426795;POU2F1..3:-0.365431985341;UFEwm:-0.367974304975;AHR_ARNT_ARNT2:-0.373827545303;NFY{A,B,C}:-0.383709664823;FOXM1:-0.406665494514;NKX3-1:-0.424628131505;RUNX1..3:-0.430605149196;STAT5{A,B}:-0.436449613124;NFKB1_REL_RELA:-0.454526055992;IRF1,2:-0.455393834483;HAND1,2:-0.458967052965;SREBF1,2:-0.509709000017;ALX4:-0.528918927906;SPIB:-0.53166228206;PAX8:-0.555415377183;ZNF143:-0.562695579785;NKX6-1,2:-0.56344973023;FOXN1:-0.586929115083;ZNF384:-0.597815106508;NR6A1:-0.63442252091;RXR{A,B,G}:-0.669830024855;MYB:-0.671531377646;AIRE:-0.690235546789;ELF1,2,4:-0.739752192425;bHLH_family:-0.758555500905;BPTF:-0.772705408527;NRF1:-0.773989717625;ATF5_CREB3:-0.826886517151;FOXD3:-0.847177979057;NFE2L1:-0.862284310734;FOX{I1,J2}:-0.881357806688;YY1:-0.976856695454;CREB1:-1.03262472731;TEF:-1.10301675841;ATF4:-1.1213943127;CDX1,2,4:-1.2137428412;ARID5B:-1.28136382811;STAT1,3:-1.55089744689;ELK1,4_GABP{A,B1}:-1.61754763109;ZBTB16:-2.39757054826 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:493-3B3;search_select_hide=table117:493-3B3 | |||
}} | }} | ||
Latest revision as of 19:17, 4 June 2020
| Name: | whole body, embryo E18 |
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| Species: | Mouse (Mus musculus) |
| Library ID: | CNhs10516 |
| Sample type: | developmental |
| Genomic View: | UCSC |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10516
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10516This sample isn't target for the analysis
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10516This sample isn't target for the analysis
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10516
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000302 (mouse embryonic day 18 sample)
0011375 (mouse whole body- embryo E18 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
FF:0000294 (mouse embryonic day 11 sample)
