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{{f5samplesTest
 
|DRA_sample_Accession=CAGE@SAMD00005353
Data sources used in FANTOM5 SSTAR
DRA_sample_Accession2=CAGE@SAMD00005555
 
|HumanCAGEScanFiles=NCig10017;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.pairs.bed.gz
 
|accession_numbers=CAGE;DRX008716;DRR009588;DRZ001013;DRZ002398;DRZ012363;DRZ013748
=== CAGE peaks ===
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005388,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230
* CAGE peak location (with the robust threshold) , annotation, and expression
|ancestors_in_cell_lineage_facet=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/CAGE_peaks/hg19.cage_peak_phase1and2combined_tpm_ann.osc.txt.gz Human]</span>
|ancestors_in_disease_facet=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/CAGE_peaks/mm9.cage_peak_phase1and2combined_tpm_ann.osc.txt.gz Mouse]</span>
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010030
* Ontology-based sample term enrichment analysis
|comment=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Sample_ontology_enrichment_of_CAGE_peaks/ Human]</span>
|created_by=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Sample_ontology_enrichment_of_CAGE_peaks/ Mouse]</span>
|creation_date=
 
|data_phase=2
=== Genes ===
|datafreeze_phase=2
* Transcription factors (curated list)
|def=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Transcription_factors/TF2CLUSTER_human_official.xls Human]</span>
|expression_enrichment_score=chr19:48325184..48325211,+!p1@CRX!2.52!333.44!CRX;;chr22:38380543..38380569,-!p1@SOX10!2.31!203.14!SOX10;;chr14:24553835..24553850,-!p1@NRL!2.25!177.91!NRL;;chr14:57277178..57277203,-!p1@OTX2!2.21!159.46!OTX2;;chr3:69985734..69985749,+!p2@MITF!2.18!149.24!MITF;;chr9:77112244..77112262,+!p1@RORB!2.09!137.45!RORB;;chr7:100065686..100065701,-!p2@TSC22D4!1.92!81.27!TSC22D4;;chr12:54779511..54779577,-!p5@ZNF385A!1.91!80.41!ZNF385A;;chr17:53342311..53342400,+!p1@HLF!1.90!88.35!HLF;;chr6:1389789..1389821,+!p1@FOXF2!1.80!84.56!FOXF2;;chr11:125034640..125034655,+!p1@PKNOX2!1.73!53.04!PKNOX2;;chr13:72441315..72441454,-!p1@DACH1!1.71!97.99!DACH1;;chr2:223163706..223163730,-!p1@PAX3!1.71!49.75!PAX3;;chr4:111544219..111544240,-!p1@PITX2!1.71!49.75!PITX2;;chr11:61522844..61522875,+!p2@C11orf9!1.70!49.53!C11orf9;;chr6:10415276..10415341,-!p2@TFAP2A!1.68!57.40!TFAP2A;;chr2:182545234..182545252,-!p1@NEUROD1!1.68!47.17!NEUROD1;;chr15:72102881..72102925,+!p1@NR2E3!1.68!47.10!NR2E3;;chr19:46801639..46801699,+!p1@HIF3A!1.68!46.75!HIF3A;;chr6:10412600..10412637,-!p1@TFAP2A!1.66!73.26!TFAP2A;;chr20:62680984..62680999,-!p1@SOX18!1.66!58.54!SOX18;;chr18:56940611..56940660,-!p1@RAX!1.66!44.67!RAX;;chr19:3772220..3772236,-!p1@RAX2!1.65!44.10!RAX2;;chr2:45168875..45168916,+!p1@SIX3!1.65!43.67!SIX3;;chr14:76842457..76842494,+!p1@ESRRB!1.64!42.89!ESRRB;;chr2:45168834..45168847,+!p2@SIX3!1.63!41.81!SIX3;;chr11:31825588..31825613,-!p8@PAX6!1.63!41.24!PAX6;;chr15:42749722..42749739,-!p2@ZFP106!1.58!65.12!ZFP106;;chr22:41763452..41763466,+!p2@TEF!1.58!36.67!TEF;;chr12:26277817..26277863,-!p2@BHLHE41!1.57!48.96!BHLHE41;;chr4:111558135..111558198,-!p2@PITX2!1.57!36.52!PITX2;;chr6:391743..391759,+!p1@IRF4!1.55!34.31!IRF4;;chr2:45169193..45169219,+!p3@SIX3!1.52!32.09!SIX3;;chr5:92918919..92918942,+!p1@NR2F1!1.51!136.66!NR2F1;;chr11:31832658..31832681,-!p1@PAX6!1.51!31.45!PAX6;;chrY:21906594..21906622,-!p1@KDM5D!1.50!30.88!KDM5D;;chr2:145277882..145277967,-!p3@ZEB2!1.47!48.68!ZEB2;;chr9:126774018..126774055,+!p1@LHX2!1.46!27.95!LHX2;;chr1:197886461..197886558,+!p1@LHX9!1.45!27.45!LHX9;;chr1:40105299..40105326,-!p1@HEYL!1.45!27.09!HEYL;;chr6:10412392..10412409,-!p4@TFAP2A!1.44!30.31!TFAP2A;;chr14:57277098..57277116,-!p3@OTX2!1.43!26.09!OTX2;;chr11:61520075..61520136,+!p1@C11orf9!1.42!52.96!C11orf9;;chr5:134369879..134369898,-!p2@PITX1!1.42!25.52!PITX1;;chr1:216896752..216896778,-!p1@ESRRG!1.42!25.45!ESRRG;;chr11:31839488..31839515,-!p3@PAX6!1.42!25.23!PAX6;;chr11:16133391..16133439,-!p6@SOX6!1.42!25.16!SOX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.41!85.84!BHLHE41;;chr3:25469724..25469773,+!p1@RARB!1.41!35.74!RARB;;chr19:37837218..37837237,+!p5@HKR1!1.41!24.95!HKR1;;chr3:52002194..52002250,-!p5@PCBP4!1.39!23.66!PCBP4;;chr9:114287433..114287513,+!p1@ZNF483!1.38!58.04!ZNF483;;chr12:52445218..52445237,+!p1@NR4A1!1.37!274.47!NR4A1;;chr11:113930425..113930471,+!p1@ZBTB16!1.36!31.31!ZBTB16;;chr6:10415484..10415508,-!p3@TFAP2A!1.33!20.23!TFAP2A;;chr21:39870339..39870443,-!p1@ERG!1.32!20.01!ERG;;chr17:59477233..59477263,+!p1@TBX2!1.31!58.61!TBX2;;chr3:25470156..25470227,+!p2@RARB!1.30!18.73!RARB;;chr17:38256799..38256815,-!p3@NR1D1!1.29!33.09!NR1D1;;chr5:92919100..92919135,+!p3@NR2F1!1.29!22.44!NR2F1;;chr14:74706150..74706155,+!p1@VSX2!1.29!18.30!VSX2;;chr17:7492684..7492778,-!p2@SOX15!1.28!37.38!SOX15;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.28!17.94!PEG3;;chr6:1389824..1389840,+!p3@FOXF2!1.27!17.58!FOXF2;;chr17:38256822..38256851,-!p1@NR1D1!1.25!129.94!NR1D1;;chr8:10588010..10588030,-!p1@SOX7!1.23!16.15!SOX7;;chr11:31832862..31832884,-!p2@PAX6!1.23!16.01!PAX6;;chr4:174451370..174451387,-!p1@HAND2!1.22!15.51!HAND2;;chr1:47903709..47903764,+!p1@BC169308!1.21!17.44!FOXD2;;chr1:2461692..2461710,-!p1@HES5!1.21!15.30!HES5;;chr2:180726040..180726052,-!p2@ZNF385B!1.20!14.87!ZNF385B;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.30!ZNF385A;;chr2:166326200..166326216,+!p1@CSRNP3!1.19!21.37!CSRNP3;;chr12:125003087..125003141,-!p4@NCOR2!1.19!18.51!NCOR2;;chr4:87928413..87928433,+!p3@AFF1!1.18!86.13!AFF1;;chr16:79634624..79634642,-!p1@MAF!1.18!54.97!MAF;;chr3:114819124..114819200,-!p3@ZBTB20!1.18!32.59!ZBTB20;;chr2:63277948..63277974,+!p1@OTX1!1.18!14.01!OTX1;;chr17:59477275..59477286,+!p3@TBX2!1.17!18.51!TBX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.17!13.79!TFAP2B;;chr16:67198683..67198698,+!p2@HSF4!1.17!13.72!HSF4;;chr17:53344980..53345011,+!p3@HLF!1.17!13.65!HLF;;chr6:1610293..1610310,+!p1@FOXC1!1.16!22.52!FOXC1;;chr6:126070769..126070801,+!p1@HEY2!1.16!15.37!HEY2;;chr1:170632285..170632309,+!p1@PRRX1!1.16!15.15!PRRX1;;chr11:8040739..8040815,+!p4@TUB!1.15!13.22!TUB;;chr17:53344945..53344977,+!p2@HLF!1.15!13.08!HLF;;chr19:49140609..49140643,-!p1@DBP!1.14!72.05!DBP;;chr6:1312325..1312340,+!p1@FOXQ1!1.14!20.94!FOXQ1;;chr4:81118647..81118666,+!p1@PRDM8!1.14!16.87!PRDM8;;chr1:2985760..2985774,+!p1@PRDM16!1.14!12.94!PRDM16;;chr11:47400078..47400106,-!p1@SPI1!1.14!12.72!SPI1;;chr7:63505799..63505904,+!p1@ZNF727!1.14!12.65!ZNF727;;chr5:134369905..134369972,-!p1@PITX1!1.13!19.37!PITX1;;chr12:26277929..26277955,-!p3@BHLHE41!1.13!17.94!BHLHE41;;chr11:125034605..125034636,+!p2@PKNOX2!1.13!12.58!PKNOX2;;chr16:67198633..67198671,+!p1@HSF4!1.13!12.37!HSF4;;chr12:55413751..55413765,+!p1@NEUROD4!1.12!12.15!NEUROD4;;chr19:3772263..3772274,-!p2@RAX2!1.12!12.08!RAX2;;chr3:52001448..52001478,-!p2@PCBP4!1.11!165.54!PCBP4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.11!12.72!GLIS1;;chr2:45169233..45169244,+!p10@SIX3!1.11!12.01!SIX3;;chr3:69985792..69985803,+!p7@MITF!1.11!11.87!MITF;;chr14:24551143..24551178,-!p6@NRL!1.11!11.87!NRL;;chr5:71803177..71803255,-!p1@ZNF366!1.10!11.58!ZNF366;;chr1:214161272..214161322,+!p1@PROX1!1.09!16.08!PROX1;;chr1:165414325..165414369,-!p1@RXRG!1.09!11.29!RXRG;;chr21:47063625..47063658,+!p1@PCBP3!1.08!48.10!PCBP3;;chr8:80679993..80680011,-!p1@HEY1!1.07!15.87!HEY1;;chr16:85932760..85932775,+!p1@IRF8!1.07!10.72!IRF8;;chr7:44143925..44143970,+!p1@AEBP1!1.06!236.02!AEBP1;;chr1:10856639..10856662,-!p2@CASZ1!1.06!10.51!CASZ1;;chr11:113930291..113930339,+!p2@ZBTB16!1.05!16.87!ZBTB16;;chr19:38085768..38085821,+!p1@ZNF540!1.04!15.22!ZNF540;;chr9:126773880..126773895,+!p2@LHX2!1.04!10.08!LHX2;;chr11:31832807..31832823,-!p4@PAX6!1.04!10.08!PAX6;;chr9:129376233..129376251,+!p2@LMX1B!1.04!9.86!LMX1B;;chr5:158526917..158526932,-!p1@EBF1!1.03!24.52!EBF1;;chr3:114866084..114866118,-!p2@ZBTB20!1.02!34.95!ZBTB20;;chr2:71127699..71127744,+!p1@VAX2!1.02!19.58!VAX2;;chr3:126076242..126076257,-!p1@KLF15!1.02!11.79!KLF15;;chr4:149363494..149363543,-!p1@NR3C2!1.02!9.36!NR3C2;;chrX:101186981..101187030,-!p1@ZMAT1!1.01!30.73!ZMAT1;;chr8:55370487..55370503,+!p1@SOX17!1.01!9.22!SOX17;;chr6:10412576..10412599,-!p5@TFAP2A!1.01!9.15!TFAP2A;;chr4:111563076..111563124,-!p8@PITX2!1.01!9.15!PITX2;;chr1:61548069..61548102,+!p3@NFIA!1.00!22.44!NFIA;;chr2:45169143..45169167,+!p5@SIX3!1.00!9.08!SIX3;;chr17:70117153..70117174,+!p1@SOX9!0.99!92.13!SOX9;;chr15:61521417..61521460,-!p2@RORA!0.99!19.94!RORA;;chr3:126076264..126076305,-!p2@KLF15!0.99!12.37!KLF15;;chr19:46800289..46800327,+!p2@HIF3A!0.99!8.86!HIF3A;;chr9:126774058..126774081,+!p3@LHX2!0.99!8.72!LHX2;;chr1:170633348..170633399,+!p2@PRRX1!0.98!11.65!PRRX1;;chr5:92919068..92919082,+!p5@NR2F1!0.98!10.29!NR2F1;;chr3:128212033..128212051,-!p1@GATA2!0.98!8.58!GATA2;;chr10:119302232..119302265,+!p1@EMX2!0.98!8.58!EMX2;;chr16:79633894..79633954,-!p3@MAF!0.97!16.23!MAF;;chr16:79634595..79634620,-!p2@MAF!0.97!15.37!MAF;;chr5:92918956..92918969,+!p4@NR2F1!0.97!9.22!NR2F1;;chr3:181429704..181429722,+!p1@SOX2!0.97!8.36!SOX2;;chr19:16435625..16435682,+!p1@KLF2!0.96!266.46!KLF2;;chr17:59477197..59477212,+!p2@TBX2!0.96!14.22!TBX2;;chr1:10754477..10754517,-!p1@CASZ1!0.96!13.58!CASZ1;;chr12:54785054..54785072,-!p4@ZNF385A!0.96!9.29!ZNF385A;;chr7:35293685..35293718,-!p1@TBX20!0.96!8.22!TBX20;;chr2:45168856..45168867,+!p7@SIX3!0.96!8.15!SIX3;;chr13:72441074..72441172,-!p2@DACH1!0.96!8.08!DACH1;;chr6:1389989..1390019,+!p2@FOXF2!0.95!7.93!FOXF2;;chr2:88752207..88752218,-!p1@FOXI3!0.95!7.86!FOXI3;;chr2:46524897..46524911,+!p2@EPAS1!0.94!22.23!EPAS1;;chr1:61548374..61548415,+!p4@NFIA!0.94!14.80!NFIA;;chr13:100634031..100634045,+!p1@ZIC2!0.94!7.79!ZIC2;;chr11:125034586..125034604,+!p3@PKNOX2!0.94!7.72!PKNOX2;;chr5:88178983..88179012,-!p1@MEF2C!0.93!60.04!MEF2C;;chr16:86600426..86600441,+!p1@FOXC2!0.93!18.94!FOXC2;;chr7:44143978..44143989,+!p2@AEBP1!0.93!14.22!AEBP1;;chr18:42260840..42260860,+!p2@SETBP1!0.93!7.51!SETBP1;;chr2:63277978..63277995,+!p2@OTX1!0.92!7.29!OTX1;;chr9:102584159..102584174,+!p2@NR4A3!0.91!13.15!NR4A3;;chr19:49140572..49140594,-!p2@DBP!0.91!11.51!DBP;;chr3:42947600..42947680,+!p1@ZNF662!0.91!10.51!ZNF662;;chr2:68592406..68592424,+!p1@PLEK!0.91!7.22!PLEK;;chr8:40755333..40755352,-!p1@ZMAT4!0.91!7.08!ZMAT4;;chr20:25062773..25062779,-!p3@VSX1!0.91!7.08!VSX1;;chr2:45168997..45169020,+!p4@SIX3!0.90!7.00!SIX3;;chr3:25469815..25469866,+!p3@RARB!0.90!7.00!RARB;;chr15:53082521..53082549,-!p1@ONECUT1!0.90!6.93!ONECUT1;;chr11:31832610..31832639,-!p5@PAX6!0.90!6.93!PAX6;;chr3:193853927..193853944,+!p1@HES1!0.89!232.30!HES1;;chr19:45971246..45971265,+!p1@FOSB!0.89!132.59!FOSB;;chr7:149470641..149470694,-!p1@ZNF467!0.89!32.09!ZNF467;;chr10:111987079..111987115,+!p3@MXI1!0.89!9.36!MXI1;;chr5:92918768..92918783,+!p8@NR2F1!0.89!6.79!NR2F1;;chr3:21792682..21792720,-!p1@ZNF385D!0.89!6.79!ZNF385D;;chr3:69986115..69986119,+!p12@MITF!0.89!6.72!MITF;;chr11:113930401..113930422,+!p3@ZBTB16!0.89!6.72!ZBTB16;;chr5:92918894..92918912,+!p2@NR2F1!0.88!22.59!NR2F1;;chr1:61547894..61547968,+!p2@NFIA!0.88!20.01!NFIA;;chr12:24715376..24715432,-!p1@SOX5!0.88!8.36!SOX5;;chr4:149363544..149363583,-!p3@NR3C2!0.88!7.72!NR3C2;;chr2:45236540..45236577,-!p1@SIX2!0.88!6.65!SIX2;;chr4:54966328..54966335,+!p1@GSX2!0.88!6.65!GSX2;;chr1:10856665..10856683,-!p4@CASZ1!0.88!6.65!CASZ1;;chr4:8873545..8873583,-!p1@HMX1!0.88!6.58!HMX1;;chr18:52989031..52989079,-!p2@TCF4!0.87!15.65!TCF4;;chr7:113726357..113726443,+!p1@FOXP2!0.87!11.51!FOXP2;;chr20: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!p14@PAX6!0.42!1.64!PAX6;;chr11:8040818..8040840,+!p5@TUB!0.42!1.64!TUB;;chr2:180726291..180726311,-!p1@ZNF385B!0.42!1.64!ZNF385B;;chr4:111558887..111558892,-!p14@PITX2!0.42!1.64!PITX2;;chr15:31658288..31658338,+!p4@KLF13!0.42!1.64!KLF13;;chr16:52581025..52581072,-!p1@TOX3!0.42!1.64!TOX3;;chr18:52988979..52988993,-!p18@TCF4!0.42!1.64!TCF4;;chr20:30193083..30193098,+!p1@ID1!0.41!188.05!ID1;;chr7:137686791..137686821,-!p1@CREB3L2!0.41!67.47!CREB3L2;;chr9:137218281..137218340,+!p1@RXRA!0.41!65.54!RXRA;;chr1:211432700..211432753,+!p1@RCOR3!0.41!42.67!RCOR3;;chr19:23578226..23578285,-!p1@ZNF91!0.41!38.60!ZNF91;;chr2:27805880..27805967,+!p1@ZNF512!0.41!32.16!ZNF512;;chr6:126112074..126112144,+!p1@NCOA7!0.41!30.59!NCOA7;;chr6:157100031..157100112,+!p2@ARID1B!0.41!12.22!ARID1B;;chr19:9546227..9546257,-!p2@ZNF266!0.41!11.44!ZNF266;;chr7:101459230..101459243,+!p2@CUX1!0.41!11.01!CUX1;;chr12:54772960..54773015,-!p3@ZNF385A!0.41!10.86!ZNF385A;;chr15:71184724..71184778,-!p1@THAP10!0.41!8.01!THAP10;;chr19:2819854..2819891,+!p1@ZNF554!0.41!7.65!ZNF554;;chr9:3525867..3525902,-!p3@RFX3!0.41!7.51!RFX3;;chr19:20188776..20188826,+!p1@ZNF90!0.41!5.58!ZNF90;;chr3:14989050..14989069,+!p2@NR2C2!0.41!4.86!NR2C2;;chr15:74833584..74833626,+!p1@ARID3B!0.41!4.72!ARID3B;;chr11:47279504..47279563,+!p1@NR1H3!0.41!4.65!NR1H3;;chr7:150946015..150946070,-!p3@SMARCD3!0.41!4.36!SMARCD3;;chr9:2017420..2017433,+!p6@SMARCA2!0.41!3.79!SMARCA2;;chr7:74072193..74072218,+!p4@GTF2I!0.41!3.29!GTF2I;;chr17:7382891..7382905,-!p7@ZBTB4!0.41!3.22!ZBTB4;;chr19:45261550..45261641,+!p6@BCL3!0.41!3.22!BCL3;;chr1:226595648..226595659,-!p3@PARP1!0.41!3.22!PARP1;;chr2:85981222..85981259,+!p2@ATOH8!0.41!3.14!ATOH8;;chr19:36980756..36980795,-!p3@ZNF566!0.41!3.07!ZNF566;;chr7:86781858..86781879,+!p3@DMTF1!0.41!3.07!DMTF1;;chr1:204042275..204042286,+!p4@SOX13!0.41!2.93!SOX13;;chr15:37390482..37390572,-!p7@MEIS2!0.41!2.50!MEIS2;;chr15:67418047..67418093,+!p4@SMAD3!0.41!2.22!SMAD3;;chr6:106546808..106546833,+!p3@PRDM1!0.41!2.22!PRDM1;;chr19:44764031..44764072,+!p1@ZNF233!0.41!2.14!ZNF233;;chr1:167298425..167298440,+!p8@POU2F1!0.41!1.57!POU2F1;;chr16:54964899..54964914,+!p2@IRX5!0.41!1.57!IRX5;;chr17:7387486..7387497,-!p11@ZBTB4!0.41!1.57!ZBTB4;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.41!1.57!MEF2B;;chr12:125003168..125003180,-!p15@NCOR2!0.41!1.57!NCOR2;;chr13:100623375..100623425,-!p1@ZIC5!0.41!1.57!ZIC5;;chr14:33408493..33408525,+!p4@NPAS3!0.41!1.57!NPAS3;;chr9:22447422..22447483,+!p1@DMRTA1!0.41!1.57!DMRTA1;;chr7:42192043..42192057,-!p10@GLI3!0.41!1.57!GLI3;;chr12:12764773..12764852,+!p1@CREBL2!0.40!56.97!CREBL2;;chr5:132299313..132299334,-!p1@AFF4!0.40!42.74!AFF4;;chrX:70586140..70586218,+!p1@TAF1!0.40!41.96!TAF1;;chr15:77197655..77197716,-!p1@SCAPER!0.40!19.94!SCAPER;;chr20:3388238..3388323,-!p1@C20orf194!0.40!15.65!C20orf194;;chr19:52901094..52901134,+!p1@ZNF528!0.40!14.65!ZNF528;;chr19:11071546..11071624,+!p2@SMARCA4!0.40!11.79!SMARCA4;;chr12:53774567..53774658,+!p2@SP1!0.40!10.51!SP1;;chr13:74708504..74708549,-!p1@KLF12!0.40!9.65!KLF12;;chr19:19976683..19976709,+!p1@ZNF253!0.40!9.51!ZNF253;;chr6:35227282..35227330,+!p2@ZNF76!0.40!7.79!ZNF76;;chr10:114710244..114710257,+!p3@TCF7L2!0.40!5.58!TCF7L2;;chr15:60884747..60884774,-!p3@RORA!0.40!4.93!RORA;;chr15:64752804..64752842,+!p2@ZNF609!0.40!4.65!ZNF609;;chr20:48807091..48807123,+!p7@CEBPB!0.40!4.29!CEBPB;;chr19:56879472..56879529,+!p2@ZNF542!0.40!4.22!ZNF542;;chr1:151043266..151043295,+!p2@GABPB2!0.40!4.15!GABPB2;;chr1:935398..935465,-!p2@HES4!0.40!4.00!HES4;;chr19:15560730..15560772,-!p3@WIZ!0.40!3.93!WIZ;;chr15:37391271..37391376,-!p5@MEIS2!0.40!3.50!MEIS2;;chr19:12476469..12476509,-!p2@ZNF442!0.40!3.14!ZNF442;;chr9:4299552..4299598,-!p5@GLIS3!0.40!3.14!GLIS3;;chr17:38498510..38498540,+!p7@RARA!0.40!1.93!RARA;;chr19:20844356..20844365,-!p3@ZNF626!0.40!1.86!ZNF626;;chr15:67458491..67458505,+!p18@SMAD3!0.40!1.50!SMAD3;;chr17:45810594..45810608,+!p1@TBX21!0.40!1.50!TBX21;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.40!1.50!ZNF177;;chr1:164528276..164528286,+!p14@PBX1!0.40!1.50!PBX1;;chr1:217250308..217250349,-!p9@ESRRG!0.40!1.50!ESRRG;;chr1:61330997..61331017,+!p17@NFIA!0.40!1.50!NFIA;;chr5:3595977..3595999,+!p1@IRX1!0.40!1.50!IRX1;;chr7:149470297..149470337,-!p3@ZNF467!0.40!1.50!ZNF467;;chr7:64342913..64342935,+!p2@ZNF273!0.40!1.50!ZNF273;;chr11:128457446..128457461,-!p4@ETS1!0.40!1.50!ETS1;;chr11:47399947..47399961,-!p3@SPI1!0.40!1.50!SPI1;;chr3:193854202..193854232,+!p2@HES1!0.40!1.50!HES1;;chr4:57522598..57522664,-!p3@HOPX!0.40!1.50!HOPX;;chrX:153363125..153363182,-!p1@MECP2!0.39!59.75!MECP2;;chr17:73780879..73780963,+!p1@UNK!0.39!37.31!UNK;;chr17:40428359..40428462,-!p1@STAT5B!0.39!27.88!STAT5B;;chr6:41514305..41514359,+!p2@FOXP4!0.39!18.16!FOXP4;;chr19:57901208..57901280,+!p1@ZNF548!0.39!17.15!ZNF548;;chr2:148778590..148778647,+!p2@MBD5!0.39!16.23!MBD5;;chr14:89883509..89883587,-!p2@FOXN3!0.39!14.80!FOXN3;;chr6:108880956..108881011,+!p1@FOXO3!0.39!14.15!FOXO3;;chr13:45151259..45151326,-!p2@TSC22D1!0.39!12.87!TSC22D1;;chr5:132299339..132299359,-!p4@AFF4!0.39!9.72!AFF4;;chr9:117160738..117160782,-!p2@AKNA!0.39!8.58!AKNA;;chr5:137804484..137804498,+!p2@EGR1!0.39!8.36!EGR1;;chr13:41635285..41635356,-!p3@ELF1!0.39!8.36!ELF1;;chr4:38665883..38665922,+!p3@KLF3!0.39!7.79!KLF3;;chr19:12405645..12405685,-!p1@ZNF44!0.39!7.29!ZNF44;;chr6:108881012..108881034,+!p3@FOXO3!0.39!7.29!FOXO3;;chr2:148778570..148778589,+!p4@MBD5!0.39!6.15!MBD5;;chr6:15246200..15246214,+!p2@JARID2!0.39!5.50!JARID2;;chr14:74253834..74253862,-!p5@C14orf43!0.39!4.86!C14orf43;;chr19:52408285..52408310,-!p3@ZNF649!0.39!4.57!ZNF649;;chr4:121843985..121844024,-!p2@PRDM5!0.39!4.22!PRDM5;;chr16:3313791..3313834,+!p2@ZNF263!0.39!4.22!ZNF263;;chr1:8483821..8483845,-!p11@RERE!0.39!3.79!RERE;;chr7:148823387..148823440,-!p1@ZNF425!0.39!3.29!ZNF425;;chr19:57019215..57019250,+!p1@ZNF471!0.39!2.64!ZNF471;;chr11:64764435..64764449,-!p1@BATF2!0.39!2.36!BATF2;;chr1:44679370..44679422,+!p3@DMAP1!0.39!2.22!DMAP1;;chr18:56531584..56531646,+!p4@ZNF532!0.39!2.22!ZNF532;;chr14:75746722..75746777,+!p2@FOS!0.39!2.07!FOS;;chr16:86544113..86544145,+!p1@FOXF1!0.39!2.00!FOXF1;;chr2:66662895..66662907,+!p3@MEIS1!0.39!2.00!MEIS1;;chr3:5021026..5021035,+!p5@BHLHE40!0.39!2.00!BHLHE40;;chr5:92920456..92920488,+!p9@NR2F1!0.39!1.86!NR2F1;;chr4:57522166..57522260,-!p2@HOPX!0.39!1.79!HOPX;;chr22:31739291..31739311,-!p2@PATZ1!0.39!1.43!PATZ1;;chr2:231090433..231090469,+!p1@SP140!0.39!1.43!SP140;;chr2:45169024..45169033,+!p12@SIX3!0.39!1.43!SIX3;;chr3:141151009..141151033,+!p10@ZBTB38!0.39!1.43!ZBTB38;;chr3:147111505..147111529,+!p6@ZIC1!0.39!1.43!ZIC1;;chr1:165414259..165414273,-!p6@RXRG!0.39!1.43!RXRG;;chr1:201979743..201979762,+!p1@ELF3!0.39!1.43!ELF3;;chrX:66763914..66763933,+!p3@AR!0.39!1.43!AR;;chrX:47225841..47225861,+!p@chrX:47225841..47225861,+!0.39!1.43!ZNF157;;chr10:131762504..131762555,-!p1@EBF3!0.39!1.43!EBF3;;chr10:28034739..28034756,-!p1@MKX!0.39!1.43!MKX;;chr11:65554528..65554546,+!p1@OVOL1!0.39!1.43!OVOL1;;chr12:85674018..85674039,+!p3@ALX1!0.39!1.43!ALX1;;chr13:41635759..41635774,-!p21@ELF1!0.39!1.43!ELF1;;chr14:60975914..60975925,+!p5@SIX6!0.39!1.43!SIX6;;chr7:15726296..15726315,-!p1@MEOX2!0.39!1.43!MEOX2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.39!1.43!SEBOX;;chr17:37934365..37934387,-!p2@IKZF3!0.39!1.43!IKZF3;;chr18:45663438..45663456,-!p3@ZBTB7C!0.39!1.43!ZBTB7C;;chr19:37837185..37837191,+!p10@HKR1!0.39!1.43!HKR1;;chr2:43453734..43453751,-!p1@ZFP36L2!0.38!233.23!ZFP36L2;;chr6:15246261..15246312,+!p1@JARID2!0.38!52.75!JARID2;;chr20:39946279..39946356,-!p1@ZHX3!0.38!32.88!ZHX3;;chr19:57791806..57791875,+!p1@ZNF460!0.38!26.37!ZNF460;;chr18:32820990..32821031,+!p1@ZNF397!0.38!21.23!ZNF397;;chr15:96873892..96873919,+!p4@NR2F2!0.38!20.87!NR2F2;;chr6:41514078..41514158,+!p1@FOXP4!0.38!19.08!FOXP4;;chr4:87856191..87856208,+!p2@AFF1!0.38!16.58!AFF1;;chr13:41240717..41240735,-!p2@FOXO1!0.38!14.37!FOXO1;;chr19:57831829..57831890,+!p1@ZNF543!0.38!12.87!ZNF543;;chr1:249132512..249132547,+!p2@ZNF672!0.38!12.29!ZNF672;;chr3:44519131..44519186,-!p1@ZNF445!0.38!11.44!ZNF445;;chr19:58400372..58400411,-!p1@ZNF814!0.38!10.72!ZNF814;;chr19:19843900..19843928,-!p1@ZNF14!0.38!10.29!ZNF14;;chr16:29816957..29817031,+!p7@MAZ!0.38!9.15!MAZ;;chr19:12721513..12721572,-!p1@ZNF490!0.38!8.51!ZNF490;;chr19:37407212..37407280,+!p1@ZNF568!0.38!8.01!ZNF568;;chr19:44598498..44598529,+!p1@ZNF224!0.38!6.29!ZNF224;;chr3:5020939..5020952,+!p2@BHLHE40!0.38!6.15!BHLHE40;;chr6:106534192..106534224,+!p1@PRDM1!0.38!5.50!PRDM1;;
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Transcription_factors/TF2CLUSTER_mouse_official.xls Mouse]</span>
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000966;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970
 
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0003056,UBERON:0010316
* Gene details (obtained from EntrezGene)
|fonse_cell_line=
** <span class="plainlinks">[ftp://ftp.ncbi.nih.gov/gene/DATA/ Human and Mouse]</span>
|fonse_cell_line_closure=
 
|fonse_cellprecursor=
=== Coexpression module ===
|fonse_cellprecursor_closure=
* FFCP member list
|fonse_developsfrom=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/SYNC015_combined_clustertables.txt Human]</span>
|fonse_developsfrom_closure=UBERON:0003056
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mouse_filtered2_p75_m22_T.clusters.txt Mouse]</span>
|fonse_disease=
* Sample ontology enrichment analysis
|fonse_disease_closure=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Sample_ontology_enrichment_of_coexpression_clusters/ human]</span>
|fonse_isa=EFO:0002091,FF:0010030
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Sample_ontology_enrichment_of_coexpression_clusters/ mouse]</span>
|fonse_isa_closure=EFO:0000001,EFO:0000683,EFO:0002091,FF:0000001,FF:0000004,FF:0000101,FF:0000102,FF:0000210,FF:0000998,FF:0010030,FF:10030-101E3,UBERON:0000061,UBERON:0000465,UBERON:0000468,UBERON:0000479,UBERON:0000966,UBERON:0001062,UBERON:0004121,UBERON:0005388,UBERON:0007023,snap:Role,snap:SpecificallyDependentContinuant
* GOStat results on Coexpression module
|fonse_location=FF:0010030,UBERON:0000479,UBERON:0001802,UBERON:0005743
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/hg19_co-expression_GOstats.tar.gz human]</span>
|fonse_location_closure=FF:0000998,FF:0010030,UBERON:0000019,UBERON:0000020,UBERON:0000033,UBERON:0000047,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000966,UBERON:0000970,UBERON:0001016,UBERON:0001032,UBERON:0001062,UBERON:0001444,UBERON:0001456,UBERON:0001802,UBERON:0002104,UBERON:0004121,UBERON:0004456,UBERON:0005388,UBERON:0005743,UBERON:0007023
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mm9_co-expression_GOstats.tar.gz mouse]</span>
|fonse_organ=
* Pathway enrichment analysis
|fonse_organ_closure=UBERON:0000019,UBERON:0000020,UBERON:0000047,UBERON:0000970
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/hg19_co-expression_modules.tar.gz human]</span>
|fonse_organismsubdivision=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mm9_co-expression_modules.tar.gz mouse]</span>
|fonse_organismsubdivision_closure=UBERON:0000033,UBERON:0000153,UBERON:0001444,UBERON:0001456
* TFBS overrepresentation
|fonse_sampletype=FF:0000004
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/hg19.novel_motif.coexpression_clusters_overrepresentation.txt.gz human_novel_motif]</span>
|fonse_sampletype_closure=FF:0000004
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/hg19.KNOWN_JASPAR_130.coexpression_clusters_overrepresentation.txt.gz human_jaspar_motif]</span>
|fonse_stage=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mm9.novel_motif.coexpression_clusters_overrepresentation.txt.gz mouse_novel_motif]</span>
|fonse_stage_closure=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/mm9.KNOWN_JASPAR_130.coexpression_clusters_overrepresentation.txt.gz  mouse_jaspar_motif]</span>
|fonse_system=
* <span class="plainlinks">[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/ENCODE_TF_ChIP-seq_peak_enrichment_coexprclusterencode.filtered.csv.gz ENCODE_TF_ChIP-seq_peak enrichment analysis]</span>
|fonse_system_closure=UBERON:0001016,UBERON:0001032,UBERON:0002104,UBERON:0004456
* Relative expression of the co-expression module
|fonse_taxon=FF:0000210
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/coexpression_DPI_cluster_scores_median_human_Aug3_2012.txt.gz human]</span>
|fonse_taxon_closure=FF:0000210
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Co-expression_clusters/coexpression_DPI_cluster_scores_median_mouse_Oct9_2012.txt.gz mouse]</span>
|fonse_treatment=
 
|fonse_treatment_closure=
=== Motifs ===
|has_quality=
* Novel motifs GREAT analysis results
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg19.nobarcode.bam
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_GREAT_analysis_results/hg19.table.txt Human]</span>
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg19.ctss.bed.gz
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_GREAT_analysis_results/mm9.table.txt Mouse]</span>
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg19.nobarcode.rdna.fa.gz
* Novel motifs Significance of the correlation with CAGE expression
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg38.nobarcode.bam
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_Significance_of_the_correlation_with_CAGE_expression/hg19.pvalues.txt Human]</span>
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg38.nobarcode.ctss.bed.gz
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/novel_Significance_of_the_correlation_with_CAGE_expression/mm9.pvalues.txt Mouse]</span>
|id=FF:10030-101E3
* Jaspar motifs Significance of the correlation with CAGE expression
|is_a=EFO:0002091;;FF:0010030
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/jaspar_Significance_of_the_correlation_with_CAGE_expression/hg19.pvalues.txt Human]</span>
|is_obsolete=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/jaspar_Significance_of_the_correlation_with_CAGE_expression/mm9.pvalues.txt Mouse]</span>
|library_id=CNhs10636
 
|library_id_phase_based=2:CNhs10636
=== Sample ===
|microRNAs=
* sample name and attributes
|microRNAs_nn=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase2.6/basic/HumanSamples2.0.sdrf.xlsx Human]</span>
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10030
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase2.6/basic/MouseSamples2.3.sdrf.xlsx Mouse]</span>
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10030
* <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Transcription_factors/ Transcription factors, relative expression]</span>
|name=retina, adult, pool1
* <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/ HOMER motifs]</span>
|namespace=FANTOM5
* Repeat family, relative expression
|part_of=
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Repeat_expression/DPI_cluster_scores_human_median_by_repFamilies_Aug06_2012.txt.gz human]</span>
|profile_cagescan=NCig10017,,,
** <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Repeat_expression/DPI_cluster_scores_mouse_median_by_repFamilies_Aug06_2012.txt.gz mouse]</span>
|profile_hcage=CNhs10636,LSID657,release008,COMPLETED
 
|profile_rnaseq=
=== Ontology ===
|profile_srnaseq=,,,
* <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Ontology/ Sample ontology(FF), Cell ontology(CL), Human disease ontology(DOID) and Uber anatomy ontology (UBERON)]</span>
|refex=http://refex.dbcls.jp/genelist.php?lang
* <span class="plainlinks">[https://fantom.gsc.riken.jp/5/datafiles/phase2.0/extra/Ontology/ Ontology mapping: FF sample <--> CL, DOID, UBERON, FF term]</span>
|repeat_enrich_byfamily=0.0299826682885844,0.154989455230581,0,0,0.0149913341442922,0,0,-0.102289624614459,0.0299826682885844,-0.165624015796002,-0.282403560576942,0,0.0299826682885844,0,0.0299826682885844,0,0,0,0,0,0.109209282410089,0.0299826682885844,0,0,-0.0206206939096631,0,0,0,0.222561752798203,0.0580284054719272,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0.0580284054719272,-0.134500541423327,0,0,0,0,0,0,0,0,0.118473051083163,0,0.109209282410089,0,0.234204722446876,0,0.201800923397112,0.0580284054719272,-0.0969923612426051,0,0,0.07884484769328,0.0580284054719272,0,0,0,0,0,0,0,0.0843723556258797,0,0,0,0,0.109209282410089,0,0,0.0644158505812354,0,0.0843723556258797,0,0.0580284054719272,0.0421861778129399,0,0.171121365957288,0.190268617787406,0.120955799424427,0,0.176188474906377,0.392715109753491,0.159746843200522,0.0149913341442922,0,0.0290142027359636,0.0580284054719272,0.0569541039928744,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0299826682885844,0,0.0753286810094995,0,0,0,-0.0746322330355034,-0.303138128798803,0,0,0,0.0149913341442922,0,0
 
|repeat_enrich_byname=0.0580284054719272,0.176188474906377,0.0299826682885844,0.0299826682885844,0.0569541039928744,0.176188474906377,0.0580284054719272,0.0843723556258797,0.0580284054719272,0.0843723556258797,0.132702316438765,0.109209282410089,0.0580284054719272,0,0,0,0.297097462104507,0.11968090542823,0.143434957413806,-0.0591427868975921,0,0,0.456039959725412,0.0580284054719272,0.63942647840532,0.0580284054719272,0.120955799424427,0.215713921073337,0.0843723556258797,0.0580284054719272,0.285376144391994,0.0299826682885844,0.106084855494311,0,0.84510658057945,0.0836188439410081,0.0299826682885844,0.108510647383493,0,0.0328821810282982,0.341017181160356,0.0299826682885844,0.190327136935256,0.353910704190108,0.0580284054719272,0.0580284054719272,0,0.196400697720283,0.169678918513704,0.0580284054719272,0.0341099714368402,0.302802255743552,0.884597857774535,0.44374107155065,0.168909262180957,0,0.0299826682885844,0,0.111803746428184,-0.0536572916014647,0.0299826682885844,0,0.215078329440455,0.651401285737894,0,0,1.4708627344174,1.87700028576311,0.0246388860264117,0.0467104609188515,0,-0.0734750822797351,0,0,0,0,0,0,0,0.176188474906377,0.234204722446876,0.0149913341442922,0.251940293321241,1.12238474551507,0.129132909727335,0.128573062730912,0.0299826682885844,0.176188474906377,0.0580284054719272,0.613990475269878,0.0843723556258797,0.154183881218585,-0.121345862635326,-0.00761104533675505,0.235130528793158,0.37866016327304,0.140861514578983,0.214442929570604,0.309261200949037,0.507219011519025,0.392715109753491,0.477544537579213,0.255141786046559,0.0665792882079856,0.190268617787406,0.303395638282092,0.256048436023077,-0.0818739367297885,0.183608813288308,0.403065582947812,0.207715723874724,0.0580284054719272,0.154989455230581,0.0774805287512777,0.287651017828159,0.154989455230581,0.151022622424184,0.432199814003432,0.532170727726985,0.269906523177604,0.306579402129282,0.197022790793288,-0.137893712295071,0.93472426697904,0.758437186841554,0.152195589972289,0.37563836714092,0.181156456387821,0.594452033732279,0.181381797928436,0.0532018447175324,0.154577819859782,-0.0715498357886075,0.0965040997271976,0.452937728338155,0.376779244519038,0.274519459932241,0.22520049744373,-0.00329773611918993,0.109209282410089,0.094165602714346,0.199617018348237,0.109209282410089,0,0,0.207977232744328,0.544276337390072,-0.0515368499310922,0.981180589260353,-0.0566670866491678,0.209444643300025,0.217850565717214,0,-0.00146789620549115,0.132702316438765,0.253233602521216,0.0301785774489828,0.288407577462076,0.204889663553,0.143748078847552,0.117902662505742,-0.0791406927822994,0.147569337763505,0.103779765327706,0.899488307426988,0.0581426105351418,0.412932564424799,-0.0655964650365468,0.158612456206117,0.294335473587462,0.389188832189086,0.154989455230581,0.541150765994355,0.542003821578921,0.223570570788632,0.270225634107653,0.0336963310192891,0.313694486558872,0.957935134238813,0.200699163045001,0.0996986392009061,0.15886217416727,0.0460479783501277,0.785924668927515,-0.20455921871736,0.139183193925583,0.208205126973533,1.10742158418011,0.109209282410089,0.0192663113837988,0.134249488729644,0.154989455230581,0.118612829726711,0.459643334648739,0.840795383214243,0.288120038180344,0.0580284054719272,0.0893507538385797,0.132702316438765,0.445123505596406,0.111881979615975,-0.205493369475804,0.0299826682885844,-0.173540195101346,-0.0475492142077899,-0.193863363666737,-0.0315987178090543,0,0,0.800629529108597,0.143961350853414,0.516832656580517,0.572498597463377,0.487348636395063,0.10355679318138,-0.0569256437664729,0.0979773755609796,0.470270103312393,0.131726404552974,0.301175811280661,0.19502604285613,0.154989455230581,0.295896587241102,0.0371837205513024,0.0299826682885844,0.197081853407027,0,0.154989455230581,0.248761734074618,0.711439361817986,0.0781419718767862,0.0843723556258797,0.0299826682885844,0,0.0571775119572321,0.0546046412050445,0,0.191216943813006,-0.190494556276683,0.00435265155210524,0.0843723556258797,-0.116540304277493,0,0.154989455230581,0,0,0.0299826682885844,0.124820825449516,0.176188474906377,0,-0.196599774803005,0.208750694332695,-0.0930347473878359,0,0.0580284054719272,0,0.0580284054719272,-0.0395349276470977,-0.048247106864143,0.215713921073337,0.102342015949244,0.0843723556258797,0,0,0.0299826682885844,0.0688484654413695,0,0,0.0149913341442922,0.0149913341442922,-0.0277477887650796,-0.280014687862306,0,0,0.0299826682885844,-0.27695440160179,0,0.0580284054719272,0,0.145376658371041,0.0425867217446814,0,0.0174010163953689,-0.0562394197667595,0.0580284054719272,0.0524899499517919,0.78957576630407,0.0717004507602619,0.158515787086075,-0.276389561289467,0.124316063549044,0.0843723556258797,0,0.660967396690318,0,0,-0.177499806899074,0,0,0.342461965362665,0,0,0,0.0580284054719272,0.143619167615954,0,0.321005246974775,0.0421861778129399,0,0.0580284054719272,0,0,0.316420805089006,0,0.154989455230581,0,0.0571775119572321,0.0299826682885844,0.0898357616229348,0.0404782597802542,0.0580284054719272,0,0,0,0,0,0.0299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=== CAGEd-oPOSSUM ===
|rna_box=101
* <span class="plainlinks">[https://cagedop.cmmt.ubc.ca/CAGEd_oPOSSUM/results/precomputed/human/index.html Human]</span>
|rna_catalog_number=Cat:636579
* <span class="plainlinks">[https://cagedop.cmmt.ubc.ca/CAGEd_oPOSSUM/results/precomputed/mouse/index.html Mouse]</span>
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=9100123A
|rna_od260/230=
|rna_od260/280=
|rna_position=E3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.01E+05
|rna_weight_ug=25
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Clontech
|sample_description=
|sample_dev_stage=24-65 years old adult
|sample_disease=normal
|sample_donor(cell lot)=25 pool
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.30133010591408e-277!GO:0005737;cytoplasm;1.71647743829993e-163!GO:0044444;cytoplasmic part;5.22372438043518e-105!GO:0043226;organelle;3.50907245233294e-99!GO:0043229;intracellular organelle;6.57130491238487e-99!GO:0043227;membrane-bound organelle;3.76547413520504e-95!GO:0043231;intracellular membrane-bound organelle;3.76547413520504e-95!GO:0005515;protein binding;2.67460595818888e-73!GO:0044422;organelle part;1.96464533533148e-62!GO:0044446;intracellular organelle part;2.24508555032461e-61!GO:0032991;macromolecular complex;1.90036206025078e-50!GO:0031090;organelle membrane;2.70936047314544e-41!GO:0016043;cellular component organization and biogenesis;1.25910104728152e-40!GO:0005739;mitochondrion;5.884835752904e-37!GO:0033036;macromolecule localization;6.24799531347386e-35!GO:0015031;protein transport;4.93973490344632e-34!GO:0030529;ribonucleoprotein complex;5.79714967400781e-34!GO:0003723;RNA binding;1.17859873927062e-33!GO:0008104;protein localization;1.83720829897799e-32!GO:0045184;establishment of protein localization;5.68925730998829e-32!GO:0044238;primary metabolic process;1.69925456781894e-29!GO:0044237;cellular metabolic process;3.00048118962655e-29!GO:0043233;organelle lumen;3.00048118962655e-29!GO:0031974;membrane-enclosed lumen;3.00048118962655e-29!GO:0046907;intracellular transport;5.9710536564398e-29!GO:0043234;protein complex;1.49832787928378e-28!GO:0031967;organelle envelope;4.44485772542463e-28!GO:0044429;mitochondrial part;5.09826238566158e-28!GO:0031975;envelope;6.04179064941848e-28!GO:0044428;nuclear part;2.3088446743925e-27!GO:0048770;pigment granule;2.33169472246419e-27!GO:0042470;melanosome;2.33169472246419e-27!GO:0005829;cytosol;1.35607505200998e-25!GO:0006886;intracellular protein transport;6.09681477258923e-24!GO:0019538;protein metabolic process;3.55768109517584e-23!GO:0016192;vesicle-mediated transport;2.36128149521533e-22!GO:0016071;mRNA metabolic process;3.70754495680187e-22!GO:0051649;establishment of cellular localization;5.69325424398572e-22!GO:0043170;macromolecule metabolic process;9.74175426495105e-22!GO:0051641;cellular localization;1.46141071486386e-21!GO:0005634;nucleus;6.06413663551137e-21!GO:0005740;mitochondrial envelope;6.73367445710165e-21!GO:0031966;mitochondrial membrane;1.38314159646532e-20!GO:0006119;oxidative phosphorylation;2.88731182663125e-20!GO:0008380;RNA splicing;1.60563191219949e-19!GO:0044260;cellular macromolecule metabolic process;3.06350785325857e-19!GO:0005840;ribosome;3.77630462188306e-19!GO:0019866;organelle inner membrane;4.06195704198265e-19!GO:0044267;cellular protein metabolic process;1.543750267515e-18!GO:0031982;vesicle;1.9674747574623e-18!GO:0031988;membrane-bound vesicle;2.06291206817264e-18!GO:0005743;mitochondrial inner membrane;2.38609777465985e-18!GO:0005794;Golgi apparatus;4.2971966577396e-18!GO:0009058;biosynthetic process;4.91455715994703e-18!GO:0016023;cytoplasmic membrane-bound vesicle;5.41272433513344e-18!GO:0031410;cytoplasmic vesicle;5.47229824577739e-18!GO:0006397;mRNA processing;1.12371557577457e-17!GO:0006396;RNA processing;1.16354158614187e-17!GO:0012505;endomembrane system;2.91940622161956e-17!GO:0065003;macromolecular complex assembly;3.28087386887155e-17!GO:0006412;translation;1.17799550347074e-16!GO:0005783;endoplasmic reticulum;1.69089234761474e-16!GO:0044249;cellular biosynthetic process;1.78187560906394e-16!GO:0003735;structural constituent of ribosome;4.49207307184152e-16!GO:0031981;nuclear lumen;4.76124182454517e-16!GO:0008134;transcription factor binding;1.08670544831819e-15!GO:0022607;cellular component assembly;1.08670544831819e-15!GO:0033279;ribosomal subunit;6.99403881120286e-15!GO:0006996;organelle organization and biogenesis;4.58983514090136e-14!GO:0005746;mitochondrial respiratory chain;1.9335387554429e-13!GO:0044455;mitochondrial membrane part;2.15727858675296e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;2.81161593719231e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.56420619102235e-13!GO:0009059;macromolecule biosynthetic process;4.71940210486433e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.65319364498485e-13!GO:0005681;spliceosome;5.71770399874119e-13!GO:0016462;pyrophosphatase activity;6.20277970783896e-13!GO:0017111;nucleoside-triphosphatase activity;1.14046760408872e-12!GO:0000166;nucleotide binding;1.73371244398383e-12!GO:0050136;NADH dehydrogenase (quinone) activity;2.02040262987956e-12!GO:0003954;NADH dehydrogenase activity;2.02040262987956e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.02040262987956e-12!GO:0050953;sensory perception of light stimulus;2.82681717146037e-12!GO:0007601;visual perception;2.82681717146037e-12!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.82681717146037e-12!GO:0005654;nucleoplasm;1.11661136697157e-11!GO:0048193;Golgi vesicle transport;2.24022998299649e-11!GO:0044445;cytosolic part;2.97073078359419e-11!GO:0008092;cytoskeletal protein binding;6.74416310097533e-11!GO:0044451;nucleoplasm part;8.03608427863165e-11!GO:0006605;protein targeting;1.07777763936796e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.30318351829055e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.38130478404953e-10!GO:0045271;respiratory chain complex I;1.38130478404953e-10!GO:0005747;mitochondrial respiratory chain complex I;1.38130478404953e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.67132880293175e-10!GO:0042773;ATP synthesis coupled electron transport;1.67132880293175e-10!GO:0044265;cellular macromolecule catabolic process;2.03342178003069e-10!GO:0043283;biopolymer metabolic process;2.03342178003069e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.85673028670543e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.30064304122556e-10!GO:0005773;vacuole;3.52745292018274e-10!GO:0044432;endoplasmic reticulum part;3.71433729624764e-10!GO:0006511;ubiquitin-dependent protein catabolic process;4.49982312080591e-10!GO:0019941;modification-dependent protein catabolic process;5.62331282912577e-10!GO:0043632;modification-dependent macromolecule catabolic process;5.62331282912577e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.67103626063605e-10!GO:0006457;protein folding;6.34568523731892e-10!GO:0019829;cation-transporting ATPase activity;7.42928229230708e-10!GO:0044257;cellular protein catabolic process;9.48590443935454e-10!GO:0010467;gene expression;1.00907251175604e-09!GO:0048523;negative regulation of cellular process;2.08031498078573e-09!GO:0031980;mitochondrial lumen;2.6428654797416e-09!GO:0005759;mitochondrial matrix;2.6428654797416e-09!GO:0003924;GTPase activity;2.80757439307846e-09!GO:0022618;protein-RNA complex assembly;3.50999734733241e-09!GO:0015986;ATP synthesis coupled proton transport;5.50362529087448e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.50362529087448e-09!GO:0015935;small ribosomal subunit;5.9448488800115e-09!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.56410362077364e-09!GO:0003712;transcription cofactor activity;6.99433233076593e-09!GO:0009055;electron carrier activity;8.39440325338679e-09!GO:0006512;ubiquitin cycle;8.84764575996083e-09!GO:0016874;ligase activity;9.12047040626755e-09!GO:0008565;protein transporter activity;9.90109211645865e-09!GO:0043412;biopolymer modification;1.13639018122642e-08!GO:0000323;lytic vacuole;1.1648128061374e-08!GO:0005764;lysosome;1.1648128061374e-08!GO:0044248;cellular catabolic process;1.22034996140165e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.29831038675462e-08!GO:0006461;protein complex assembly;1.29942082352512e-08!GO:0006464;protein modification process;1.33054126636055e-08!GO:0051082;unfolded protein binding;1.60756026349622e-08!GO:0005768;endosome;1.63100861383004e-08!GO:0051186;cofactor metabolic process;1.9010052078041e-08!GO:0030036;actin cytoskeleton organization and biogenesis;2.7244369780699e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.85186707396816e-08!GO:0032553;ribonucleotide binding;3.44787464412875e-08!GO:0032555;purine ribonucleotide binding;3.44787464412875e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.53327971657272e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.53327971657272e-08!GO:0000502;proteasome complex (sensu Eukaryota);3.53327971657272e-08!GO:0043687;post-translational protein modification;3.6320637735995e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.93823086938513e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.93823086938513e-08!GO:0005635;nuclear envelope;4.38917728068218e-08!GO:0008135;translation factor activity, nucleic acid binding;4.72457073553048e-08!GO:0043228;non-membrane-bound organelle;5.40148774796517e-08!GO:0043232;intracellular non-membrane-bound organelle;5.40148774796517e-08!GO:0017076;purine nucleotide binding;5.45466619398188e-08!GO:0016044;membrane organization and biogenesis;7.25846836197296e-08!GO:0031965;nuclear membrane;7.88900879866578e-08!GO:0048519;negative regulation of biological process;9.65523873275206e-08!GO:0043285;biopolymer catabolic process;1.00588860519654e-07!GO:0006913;nucleocytoplasmic transport;1.01080722796262e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.04984558844193e-07!GO:0005789;endoplasmic reticulum membrane;1.10163635201738e-07!GO:0048475;coated membrane;1.22182549328705e-07!GO:0030117;membrane coat;1.22182549328705e-07!GO:0006366;transcription from RNA polymerase II promoter;1.29948086795843e-07!GO:0009057;macromolecule catabolic process;1.40390820852351e-07!GO:0016604;nuclear body;1.51917872576574e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.70501294428936e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.70501294428936e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.79598229603711e-07!GO:0030029;actin filament-based process;2.06093718495697e-07!GO:0006793;phosphorus metabolic process;2.1397823621597e-07!GO:0006796;phosphate metabolic process;2.1397823621597e-07!GO:0051169;nuclear transport;2.20540367666682e-07!GO:0009141;nucleoside triphosphate metabolic process;2.22027780884538e-07!GO:0030163;protein catabolic process;2.38295499013639e-07!GO:0044431;Golgi apparatus part;3.30503695413824e-07!GO:0006732;coenzyme metabolic process;3.55525747087361e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.55525747087361e-07!GO:0007264;small GTPase mediated signal transduction;3.63346490195146e-07!GO:0045333;cellular respiration;3.67358779563187e-07!GO:0006754;ATP biosynthetic process;4.57596687758986e-07!GO:0006753;nucleoside phosphate metabolic process;4.57596687758986e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.61433114035918e-07!GO:0016607;nuclear speck;4.64412423607069e-07!GO:0051179;localization;4.93751891871962e-07!GO:0006164;purine nucleotide biosynthetic process;5.14098701519321e-07!GO:0009150;purine ribonucleotide metabolic process;5.18822084857072e-07!GO:0006163;purine nucleotide metabolic process;5.2845546866134e-07!GO:0031252;leading edge;6.18318111117994e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;6.80929861790858e-07!GO:0000375;RNA splicing, via transesterification reactions;6.80929861790858e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.80929861790858e-07!GO:0006810;transport;7.04571367249447e-07!GO:0006446;regulation of translational initiation;7.30015545632572e-07!GO:0015934;large ribosomal subunit;7.48637474969072e-07!GO:0009060;aerobic respiration;9.44807946908196e-07!GO:0016564;transcription repressor activity;1.17576089860715e-06!GO:0003779;actin binding;1.17576089860715e-06!GO:0006897;endocytosis;1.24630744237396e-06!GO:0010324;membrane invagination;1.24630744237396e-06!GO:0009259;ribonucleotide metabolic process;1.32557187907662e-06!GO:0005798;Golgi-associated vesicle;1.46462631330771e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.76804422874162e-06!GO:0009966;regulation of signal transduction;2.3167986103591e-06!GO:0008639;small protein conjugating enzyme activity;2.48054124128931e-06!GO:0009260;ribonucleotide biosynthetic process;2.56530612379329e-06!GO:0046034;ATP metabolic process;2.71805107013169e-06!GO:0004842;ubiquitin-protein ligase activity;2.76806497678391e-06!GO:0012506;vesicle membrane;2.95669228542536e-06!GO:0017038;protein import;3.89714673742851e-06!GO:0005793;ER-Golgi intermediate compartment;3.99495850237747e-06!GO:0003743;translation initiation factor activity;4.17098332224221e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.31320470476385e-06!GO:0030120;vesicle coat;4.39324412472481e-06!GO:0030662;coated vesicle membrane;4.39324412472481e-06!GO:0019787;small conjugating protein ligase activity;5.12295348148268e-06!GO:0045045;secretory pathway;5.66813988485016e-06!GO:0030695;GTPase regulator activity;6.42363086995176e-06!GO:0005770;late endosome;6.68820377169803e-06!GO:0006413;translational initiation;6.92532336639744e-06!GO:0048471;perinuclear region of cytoplasm;6.99714347776575e-06!GO:0044433;cytoplasmic vesicle part;7.11770482526133e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.20451525434484e-06!GO:0005905;coated pit;8.71788493865072e-06!GO:0006099;tricarboxylic acid cycle;1.09405927273556e-05!GO:0046356;acetyl-CoA catabolic process;1.09405927273556e-05!GO:0032561;guanyl ribonucleotide binding;1.19408503614551e-05!GO:0019001;guanyl nucleotide binding;1.19408503614551e-05!GO:0009056;catabolic process;1.22282965993327e-05!GO:0008047;enzyme activator activity;1.23371879073873e-05!GO:0051234;establishment of localization;1.25065850031387e-05!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.3502997161305e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.48799471628649e-05!GO:0008654;phospholipid biosynthetic process;1.52452212845271e-05!GO:0019867;outer membrane;1.59965464619065e-05!GO:0030659;cytoplasmic vesicle membrane;1.76726215567502e-05!GO:0044440;endosomal part;1.83568904033483e-05!GO:0010008;endosome membrane;1.83568904033483e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.8660780590494e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.93904625592457e-05!GO:0015399;primary active transmembrane transporter activity;1.93904625592457e-05!GO:0016310;phosphorylation;1.93925756903703e-05!GO:0005525;GTP binding;1.96399599633053e-05!GO:0005083;small GTPase regulator activity;2.0583646845011e-05!GO:0044453;nuclear membrane part;2.15381228353359e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;2.31936545831407e-05!GO:0012501;programmed cell death;2.38516642743088e-05!GO:0019899;enzyme binding;2.7613316357092e-05!GO:0009109;coenzyme catabolic process;2.76844960278807e-05!GO:0042623;ATPase activity, coupled;2.81940670886552e-05!GO:0006915;apoptosis;3.10508469656187e-05!GO:0022890;inorganic cation transmembrane transporter activity;3.51557644422652e-05!GO:0008219;cell death;3.60609462730449e-05!GO:0016265;death;3.60609462730449e-05!GO:0016887;ATPase activity;3.60609462730449e-05!GO:0005761;mitochondrial ribosome;3.73868763564749e-05!GO:0000313;organellar ribosome;3.73868763564749e-05!GO:0003714;transcription corepressor activity;4.34110273483017e-05!GO:0006084;acetyl-CoA metabolic process;4.5727796699917e-05!GO:0007010;cytoskeleton organization and biogenesis;4.5727796699917e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.63292049037341e-05!GO:0045259;proton-transporting ATP synthase complex;4.68052595602775e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.9622989115995e-05!GO:0043492;ATPase activity, coupled to movement of substances;5.24992187046493e-05!GO:0031968;organelle outer membrane;5.28433557565529e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.42800073426042e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;5.50773046729434e-05!GO:0050789;regulation of biological process;5.76474916838343e-05!GO:0050794;regulation of cellular process;5.95106005894023e-05!GO:0016881;acid-amino acid ligase activity;6.30304201641925e-05!GO:0006606;protein import into nucleus;6.33615202886949e-05!GO:0030133;transport vesicle;6.46254738532589e-05!GO:0007265;Ras protein signal transduction;7.14875798156598e-05!GO:0005791;rough endoplasmic reticulum;7.26992887848472e-05!GO:0003713;transcription coactivator activity;8.14244906409967e-05!GO:0000902;cell morphogenesis;8.57155395912771e-05!GO:0032989;cellular structure morphogenesis;8.57155395912771e-05!GO:0016049;cell growth;9.46184314222494e-05!GO:0008361;regulation of cell size;9.93544848682171e-05!GO:0051187;cofactor catabolic process;0.000109060053830886!GO:0032940;secretion by cell;0.000117728251691806!GO:0006613;cotranslational protein targeting to membrane;0.000118432592754741!GO:0051170;nuclear import;0.000128406293724125!GO:0016491;oxidoreductase activity;0.000129361079983883!GO:0000139;Golgi membrane;0.000135146262642681!GO:0051188;cofactor biosynthetic process;0.000162738225652037!GO:0032559;adenyl ribonucleotide binding;0.000181762124211712!GO:0006752;group transfer coenzyme metabolic process;0.000189848874171417!GO:0016481;negative regulation of transcription;0.000203218612378493!GO:0015980;energy derivation by oxidation of organic compounds;0.000212853421087663!GO:0043566;structure-specific DNA binding;0.000219730834940962!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000225357981387507!GO:0051246;regulation of protein metabolic process;0.000234180098218027!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000234801317641364!GO:0030118;clathrin coat;0.000253457118231039!GO:0016568;chromatin modification;0.000255389489495606!GO:0006643;membrane lipid metabolic process;0.000255389489495606!GO:0005769;early endosome;0.000282290478027779!GO:0030554;adenyl nucleotide binding;0.000287240008171667!GO:0009117;nucleotide metabolic process;0.000305575133350042!GO:0005730;nucleolus;0.000321894329319308!GO:0005096;GTPase activator activity;0.000322135883404063!GO:0016791;phosphoric monoester hydrolase activity;0.000343809457449924!GO:0005741;mitochondrial outer membrane;0.00034987370462586!GO:0016563;transcription activator activity;0.000352629580772401!GO:0042578;phosphoric ester hydrolase activity;0.000368063129357865!GO:0045786;negative regulation of progression through cell cycle;0.000377949899871385!GO:0005774;vacuolar membrane;0.000387977717997792!GO:0051427;hormone receptor binding;0.000389313734012584!GO:0045893;positive regulation of transcription, DNA-dependent;0.000389918921276588!GO:0005524;ATP binding;0.00039900504994518!GO:0007243;protein kinase cascade;0.000405456331740753!GO:0006650;glycerophospholipid metabolic process;0.000443799452797598!GO:0007600;sensory perception;0.000462959086754199!GO:0050657;nucleic acid transport;0.000498757628698891!GO:0051236;establishment of RNA localization;0.000498757628698891!GO:0050658;RNA transport;0.000498757628698891!GO:0006644;phospholipid metabolic process;0.000512822246009418!GO:0006916;anti-apoptosis;0.000524154078793128!GO:0006403;RNA localization;0.000533093825940454!GO:0006323;DNA packaging;0.000629339180063864!GO:0009108;coenzyme biosynthetic process;0.000642221747999989!GO:0009583;detection of light stimulus;0.000690700004697453!GO:0007242;intracellular signaling cascade;0.000701663898979944!GO:0065007;biological regulation;0.00070342867173323!GO:0035257;nuclear hormone receptor binding;0.000715195764119062!GO:0030867;rough endoplasmic reticulum membrane;0.000725136779664296!GO:0019748;secondary metabolic process;0.000749458065944516!GO:0050962;detection of light stimulus during sensory perception;0.000759007285754176!GO:0050908;detection of light stimulus during visual perception;0.000759007285754176!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000866967488351025!GO:0045892;negative regulation of transcription, DNA-dependent;0.000867757749014489!GO:0030135;coated vesicle;0.000868405580832315!GO:0001726;ruffle;0.000902320287428396!GO:0005643;nuclear pore;0.000908932745138421!GO:0043069;negative regulation of programmed cell death;0.000914058506926281!GO:0009892;negative regulation of metabolic process;0.000929961068860538!GO:0009584;detection of visible light;0.000969923688186633!GO:0000245;spliceosome assembly;0.00100160109060754!GO:0016070;RNA metabolic process;0.00102601257003952!GO:0042802;identical protein binding;0.00105240677804138!GO:0008286;insulin receptor signaling pathway;0.00106234936681443!GO:0000151;ubiquitin ligase complex;0.0010833912827331!GO:0031324;negative regulation of cellular metabolic process;0.0010907569663295!GO:0031902;late endosome membrane;0.00109101761428427!GO:0043066;negative regulation of apoptosis;0.00110780813580654!GO:0015629;actin cytoskeleton;0.0011221167547154!GO:0046467;membrane lipid biosynthetic process;0.00113490650843982!GO:0030027;lamellipodium;0.00118060366869116!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00118436988582198!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00120760231445378!GO:0007167;enzyme linked receptor protein signaling pathway;0.0012736630779765!GO:0006091;generation of precursor metabolites and energy;0.00133275280099528!GO:0016126;sterol biosynthetic process;0.0013745708973573!GO:0001666;response to hypoxia;0.00141373679057797!GO:0008250;oligosaccharyl transferase complex;0.00155415403506919!GO:0051128;regulation of cellular component organization and biogenesis;0.00174098370744123!GO:0001558;regulation of cell growth;0.00177517205461721!GO:0005788;endoplasmic reticulum lumen;0.00178383304287188!GO:0045941;positive regulation of transcription;0.00182275581821037!GO:0046474;glycerophospholipid biosynthetic process;0.00192564162658016!GO:0065002;intracellular protein transport across a membrane;0.0019536959356787!GO:0005839;proteasome core complex (sensu Eukaryota);0.00202513871309164!GO:0030384;phosphoinositide metabolic process;0.00209970215801417!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0021368782616203!GO:0044437;vacuolar part;0.0021691366385896!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0021691366385896!GO:0007602;phototransduction;0.00220822596886675!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00222050999346232!GO:0016197;endosome transport;0.00224445320865405!GO:0003697;single-stranded DNA binding;0.00226718089554463!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00233763680276754!GO:0004667;prostaglandin-D synthase activity;0.00233763680276754!GO:0050802;circadian sleep/wake cycle, sleep;0.00233763680276754!GO:0022410;circadian sleep/wake cycle process;0.00233763680276754!GO:0042749;regulation of circadian sleep/wake cycle;0.00233763680276754!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00253356586087855!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00253356586087855!GO:0035258;steroid hormone receptor binding;0.00282477008446145!GO:0005765;lysosomal membrane;0.00290438589451699!GO:0046530;photoreceptor cell differentiation;0.00295460748512923!GO:0004721;phosphoprotein phosphatase activity;0.00299869268958931!GO:0006818;hydrogen transport;0.00313703924991515!GO:0009165;nucleotide biosynthetic process;0.00316537652569211!GO:0043623;cellular protein complex assembly;0.00327972504959956!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00331079074490128!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00331079074490128!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00331079074490128!GO:0006612;protein targeting to membrane;0.00342799168442586!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00351566587044728!GO:0051920;peroxiredoxin activity;0.00359365077566484!GO:0003724;RNA helicase activity;0.00361542246800171!GO:0019843;rRNA binding;0.00362692257217495!GO:0008287;protein serine/threonine phosphatase complex;0.00374243916020779!GO:0048468;cell development;0.00401450521224703!GO:0008154;actin polymerization and/or depolymerization;0.00405376879456721!GO:0046488;phosphatidylinositol metabolic process;0.00407916465461655!GO:0019904;protein domain specific binding;0.00416227634960801!GO:0051028;mRNA transport;0.00423679382286221!GO:0051056;regulation of small GTPase mediated signal transduction;0.00430395212402867!GO:0030532;small nuclear ribonucleoprotein complex;0.00430631783053366!GO:0051789;response to protein stimulus;0.00444607391798792!GO:0006986;response to unfolded protein;0.00444607391798792!GO:0030660;Golgi-associated vesicle membrane;0.00446757295057364!GO:0005667;transcription factor complex;0.00457556340200003!GO:0030658;transport vesicle membrane;0.00481211441326174!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00491187979805033!GO:0007040;lysosome organization and biogenesis;0.00492960863654065!GO:0015992;proton transport;0.00506833290171362!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00512498066367364!GO:0016311;dephosphorylation;0.00544322759219174!GO:0048066;pigmentation during development;0.00551140700000765!GO:0004576;oligosaccharyl transferase activity;0.00551185577089924!GO:0006891;intra-Golgi vesicle-mediated transport;0.00574671690385205!GO:0006259;DNA metabolic process;0.00584163941820946!GO:0044255;cellular lipid metabolic process;0.00609691356037762!GO:0046489;phosphoinositide biosynthetic process;0.00658334664761453!GO:0030518;steroid hormone receptor signaling pathway;0.00663072836014175!GO:0015631;tubulin binding;0.00688212596931585!GO:0032446;protein modification by small protein conjugation;0.00713048002379442!GO:0006629;lipid metabolic process;0.00717095786308352!GO:0007033;vacuole organization and biogenesis;0.00723117216749703!GO:0015630;microtubule cytoskeleton;0.00736225742769403!GO:0005885;Arp2/3 protein complex;0.00737957861012824!GO:0008610;lipid biosynthetic process;0.00743305388970135!GO:0030521;androgen receptor signaling pathway;0.00743825218602676!GO:0004298;threonine endopeptidase activity;0.00749384932712325!GO:0016567;protein ubiquitination;0.00761751958194842!GO:0004722;protein serine/threonine phosphatase activity;0.00765157757180291!GO:0006720;isoprenoid metabolic process;0.00766217981948421!GO:0006695;cholesterol biosynthetic process;0.00795414837456373!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00800928168327882!GO:0050811;GABA receptor binding;0.00812404351899711!GO:0008026;ATP-dependent helicase activity;0.00822020829680256!GO:0006414;translational elongation;0.00847973046508117!GO:0017166;vinculin binding;0.00856253661391335!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0086757832251883!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00868741526638416!GO:0004812;aminoacyl-tRNA ligase activity;0.00868741526638416!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00868741526638416!GO:0065009;regulation of a molecular function;0.00893328384614599!GO:0005048;signal sequence binding;0.00896611796343467!GO:0007266;Rho protein signal transduction;0.00910689794741006!GO:0043021;ribonucleoprotein binding;0.00919424659226473!GO:0051168;nuclear export;0.0093375329488721!GO:0006776;vitamin A metabolic process;0.00948215309660298!GO:0042981;regulation of apoptosis;0.00948215309660298!GO:0030134;ER to Golgi transport vesicle;0.00962372347161181!GO:0003690;double-stranded DNA binding;0.00982678826780086!GO:0006766;vitamin metabolic process;0.00982678826780086!GO:0046578;regulation of Ras protein signal transduction;0.00999208781020818!GO:0043488;regulation of mRNA stability;0.0100153107850607!GO:0043487;regulation of RNA stability;0.0100153107850607!GO:0030132;clathrin coat of coated pit;0.0102839623355213!GO:0003702;RNA polymerase II transcription factor activity;0.010398629517188!GO:0006402;mRNA catabolic process;0.0105689867230507!GO:0044262;cellular carbohydrate metabolic process;0.0105788631950783!GO:0043067;regulation of programmed cell death;0.0107235824397993!GO:0033116;ER-Golgi intermediate compartment membrane;0.011007299141713!GO:0030127;COPII vesicle coat;0.0111107661539638!GO:0012507;ER to Golgi transport vesicle membrane;0.0111107661539638!GO:0045454;cell redox homeostasis;0.0113395828790032!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0118609971128007!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0120483500800717!GO:0030137;COPI-coated vesicle;0.0123675164097876!GO:0033673;negative regulation of kinase activity;0.0133727935609828!GO:0006469;negative regulation of protein kinase activity;0.0133727935609828!GO:0018196;peptidyl-asparagine modification;0.0136519105118157!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0136519105118157!GO:0001523;retinoid metabolic process;0.0138155886198214!GO:0016101;diterpenoid metabolic process;0.0138155886198214!GO:0009416;response to light stimulus;0.0139812189086435!GO:0003729;mRNA binding;0.0141151496138326!GO:0043038;amino acid activation;0.0142544740050517!GO:0006418;tRNA aminoacylation for protein translation;0.0142544740050517!GO:0043039;tRNA aminoacylation;0.0142544740050517!GO:0006470;protein amino acid dephosphorylation;0.01440658652377!GO:0005099;Ras GTPase activator activity;0.0156128655461446!GO:0046983;protein dimerization activity;0.0156674446321233!GO:0004386;helicase activity;0.0157093708093032!GO:0040008;regulation of growth;0.016565484620552!GO:0008186;RNA-dependent ATPase activity;0.0165713624859847!GO:0051287;NAD binding;0.0166344456845793!GO:0005869;dynactin complex;0.0168445658620418!GO:0051252;regulation of RNA metabolic process;0.0169609772660442!GO:0016853;isomerase activity;0.0176723029709129!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0178281604336188!GO:0007603;phototransduction, visible light;0.018076971797528!GO:0033162;melanosome membrane;0.0181602107296481!GO:0045009;chitosome;0.0181602107296481!GO:0006509;membrane protein ectodomain proteolysis;0.0184931248307377!GO:0033619;membrane protein proteolysis;0.0184931248307377!GO:0051087;chaperone binding;0.0186427476320291!GO:0030663;COPI coated vesicle membrane;0.0191235253439078!GO:0030126;COPI vesicle coat;0.0191235253439078!GO:0016301;kinase activity;0.019960290841702!GO:0048593;camera-type eye morphogenesis;0.020655585600374!GO:0003746;translation elongation factor activity;0.020817483824473!GO:0050681;androgen receptor binding;0.0213990569350571!GO:0006607;NLS-bearing substrate import into nucleus;0.0214323819263315!GO:0048500;signal recognition particle;0.0214359105992702!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0215615411088883!GO:0009582;detection of abiotic stimulus;0.0223832574786779!GO:0048592;eye morphogenesis;0.0225084268180922!GO:0051540;metal cluster binding;0.023529115932486!GO:0051536;iron-sulfur cluster binding;0.023529115932486!GO:0030131;clathrin adaptor complex;0.0238977143977099!GO:0016788;hydrolase activity, acting on ester bonds;0.0239449805823564!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0239449805823564!GO:0030641;cellular hydrogen ion homeostasis;0.0247313998667644!GO:0016050;vesicle organization and biogenesis;0.0249757839540671!GO:0030119;AP-type membrane coat adaptor complex;0.0251514553286308!GO:0042574;retinal metabolic process;0.0255858315331633!GO:0043288;apocarotenoid metabolic process;0.0255858315331633!GO:0048154;S100 beta binding;0.0257674833814557!GO:0046930;pore complex;0.0257674833814557!GO:0006892;post-Golgi vesicle-mediated transport;0.0259037433827409!GO:0035035;histone acetyltransferase binding;0.0264305982910266!GO:0004192;cathepsin D activity;0.0268000883385499!GO:0046148;pigment biosynthetic process;0.0269149945254367!GO:0051726;regulation of cell cycle;0.0272453222992743!GO:0048487;beta-tubulin binding;0.0278824555098167!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0279449813988637!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0279449813988637!GO:0055083;monovalent inorganic anion homeostasis;0.0279449813988637!GO:0055064;chloride ion homeostasis;0.0279449813988637!GO:0030644;cellular chloride ion homeostasis;0.0279449813988637!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0280810779080842!GO:0015002;heme-copper terminal oxidase activity;0.0280810779080842!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0280810779080842!GO:0004129;cytochrome-c oxidase activity;0.0280810779080842!GO:0031901;early endosome membrane;0.0287018793875704!GO:0006635;fatty acid beta-oxidation;0.0290869909068614!GO:0030522;intracellular receptor-mediated signaling pathway;0.0295181599756456!GO:0005085;guanyl-nucleotide exchange factor activity;0.0295695754614397!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0300740196404805!GO:0043405;regulation of MAP kinase activity;0.0301709292215724!GO:0003676;nucleic acid binding;0.0307931147815654!GO:0030426;growth cone;0.0308079396692891!GO:0042461;photoreceptor cell development;0.0311260146178051!GO:0008139;nuclear localization sequence binding;0.031389218594869!GO:0051539;4 iron, 4 sulfur cluster binding;0.031389218594869!GO:0048489;synaptic vesicle transport;0.0317404960326652!GO:0004364;glutathione transferase activity;0.0317855787923128!GO:0006661;phosphatidylinositol biosynthetic process;0.0318641017571102!GO:0051270;regulation of cell motility;0.0319916887119856!GO:0006333;chromatin assembly or disassembly;0.032067602058163!GO:0007005;mitochondrion organization and biogenesis;0.0320854298970386!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0323355227733655!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0330441374948091!GO:0005813;centrosome;0.033089373072539!GO:0030100;regulation of endocytosis;0.0332207314557322!GO:0000059;protein import into nucleus, docking;0.0334445089616959!GO:0051348;negative regulation of transferase activity;0.0334625489764372!GO:0006672;ceramide metabolic process;0.0337683046334109!GO:0030041;actin filament polymerization;0.0337683046334109!GO:0048522;positive regulation of cellular process;0.0344622223169016!GO:0006582;melanin metabolic process;0.0344622223169016!GO:0006583;melanin biosynthetic process from tyrosine;0.0344622223169016!GO:0042438;melanin biosynthetic process;0.0344622223169016!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0345502981273769!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0349672223981429!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0349672223981429!GO:0030427;site of polarized growth;0.0354785078918509!GO:0000074;regulation of progression through cell cycle;0.0358287796346837!GO:0005100;Rho GTPase activator activity;0.0362902021535912!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0366659342087841!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0367396549620333!GO:0000096;sulfur amino acid metabolic process;0.036910303803292!GO:0016787;hydrolase activity;0.0371868563396018!GO:0004004;ATP-dependent RNA helicase activity;0.0379948196371632!GO:0004300;enoyl-CoA hydratase activity;0.0380528972432867!GO:0005874;microtubule;0.0384736122353444!GO:0006979;response to oxidative stress;0.0384736122353444!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0387430961556912!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0388587341343926!GO:0045047;protein targeting to ER;0.0388587341343926!GO:0030004;cellular monovalent inorganic cation homeostasis;0.0389193386932667!GO:0055067;monovalent inorganic cation homeostasis;0.0389193386932667!GO:0042440;pigment metabolic process;0.0399019006132362!GO:0031072;heat shock protein binding;0.0402655130990983!GO:0040011;locomotion;0.0403697499139535!GO:0006007;glucose catabolic process;0.0404690040785514!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0406727125164555!GO:0030125;clathrin vesicle coat;0.0409940233339419!GO:0030665;clathrin coated vesicle membrane;0.0409940233339419!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0417136634743356!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0418074044260697!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0418576878651021!GO:0004784;superoxide dismutase activity;0.0418576878651021!GO:0016859;cis-trans isomerase activity;0.0418982481774343!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0424761948900188!GO:0007030;Golgi organization and biogenesis;0.0436877987312598!GO:0008354;germ cell migration;0.0441919246851954!GO:0043087;regulation of GTPase activity;0.0446556583125285!GO:0051276;chromosome organization and biogenesis;0.0454110071679113!GO:0051049;regulation of transport;0.045534215695702!GO:0006721;terpenoid metabolic process;0.0462897420427014!GO:0030176;integral to endoplasmic reticulum membrane;0.0467400336074553!GO:0005912;adherens junction;0.0468354470994235!GO:0008601;protein phosphatase type 2A regulator activity;0.0468777251768553!GO:0005938;cell cortex;0.0473024199641286!GO:0003785;actin monomer binding;0.047330681667528!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0475242148793539!GO:0006376;mRNA splice site selection;0.0477057721208852!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0477057721208852!GO:0032906;transforming growth factor-beta2 production;0.0477831037152628!GO:0032909;regulation of transforming growth factor-beta2 production;0.0477831037152628!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0493358447602316!GO:0050790;regulation of catalytic activity;0.0493414002671036!GO:0005784;translocon complex;0.0494450641663821!GO:0042158;lipoprotein biosynthetic process;0.049926510989382!GO:0000159;protein phosphatase type 2A complex;0.049926510989382
|sample_id=10030
|sample_note=
|sample_sex=mixed
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=retina
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|xref=
}}

Latest revision as of 20:55, 16 February 2022

Data sources used in FANTOM5 SSTAR


CAGE peaks

  • CAGE peak location (with the robust threshold) , annotation, and expression
  • Ontology-based sample term enrichment analysis

Genes

Coexpression module

Motifs

  • Novel motifs GREAT analysis results
  • Novel motifs Significance of the correlation with CAGE expression
  • Jaspar motifs Significance of the correlation with CAGE expression

Sample

Ontology

CAGEd-oPOSSUM

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