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== Ancestors in FF ontology ==
== Ancestors in FF ontology ==
<!--
{{#if: {{{ancestors_in_cell_lineage_facet}}} |'''Cell_lineage'''<br>{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|
{{#if: {{{ancestors_in_cell_lineage_facet}}} |'''Cell_lineage'''<br>{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|
{{#set:ancestors_in_cell_lineage_facet=$}}CL:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}}
{{#set:ancestors_in_cell_lineage_facet=$}}CL:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}}
{{#if: {{{ancestors_in_disease_facet}}} |<br>'''Disease'''<br>{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|
{{#if: {{{ancestors_in_disease_facet}}} |<br>'''Disease'''<br>{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|
{{#set:ancestors_in_disease_facet=$}}DOID:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}}
{{#set:ancestors_in_disease_facet=$}}DOID:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}}
{{#if: {{{ancestors_in_anatomy_facet}}} |<br>'''Anatomy'''<br>{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|
{{#set:ancestors_in_anatomy_facet=$}}UBERON:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}}
-->


<table>
<table>
{{#if: {{{ancestors_in_anatomy_facet}}} |
<tr><th>Anatomy</th><th>Cell lineage</th> <th>Disease</th>
<tr><th>Anatomy</th><td>
<tr>
<th>
{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}}UBERON:{{#ask:[[id::$]]|?name=|format=list}}|;}}
{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}}UBERON:{{#ask:[[id::$]]|?name=|format=list}}|;}}
|}}
</th>
<th>
{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|{{#set:ancestors_in_cell_lineage_facet=$}}CL:{{#ask:[[id::$]]|?name=|format=list}}|;}}
</th>
<th>
{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|{{#set:ancestors_in_disease_facet=$}}DOID:{{#ask:[[id::$]]|?name=|format=list}}|;}}
</th>
 





Revision as of 02:15, 4 April 2012

Name:{{{name}}}
Species:{{{sample_species}}}
Genomic View:zenbu , UCSC



Top activities with MARA

{{#top_motifs_table01: {{{top_motifs}}}}}


Details

Transcriptome
Genomic view zenbu , UCSC
hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}
sample detail
species {{{sample_species}}}
strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition {{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}
RNA info
sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration {{{rna_concentration}}}

Ancestors in FF ontology

AnatomyCell lineage Disease

UBERON:

CL:

Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.DOID: