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== Ancestors in FF ontology == | == Ancestors in FF ontology == | ||
<!-- | |||
{{#if: {{{ancestors_in_cell_lineage_facet}}} |'''Cell_lineage'''<br>{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$| | {{#if: {{{ancestors_in_cell_lineage_facet}}} |'''Cell_lineage'''<br>{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$| | ||
{{#set:ancestors_in_cell_lineage_facet=$}}CL:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}} | {{#set:ancestors_in_cell_lineage_facet=$}}CL:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}} | ||
{{#if: {{{ancestors_in_disease_facet}}} |<br>'''Disease'''<br>{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$| | {{#if: {{{ancestors_in_disease_facet}}} |<br>'''Disease'''<br>{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$| | ||
{{#set:ancestors_in_disease_facet=$}}DOID:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}} | {{#set:ancestors_in_disease_facet=$}}DOID:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}} | ||
{{#if: {{{ancestors_in_anatomy_facet}}} |<br>'''Anatomy'''<br>{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$| | |||
{{#set:ancestors_in_anatomy_facet=$}}UBERON:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}} | |||
--> | |||
<table> | <table> | ||
<tr><th>Anatomy</th><th>Cell lineage</th> <th>Disease</th> | |||
<tr><th>Anatomy</th>< | <tr> | ||
<th> | |||
{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}}UBERON:{{#ask:[[id::$]]|?name=|format=list}}|;}} | {{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}}UBERON:{{#ask:[[id::$]]|?name=|format=list}}|;}} | ||
|}} | </th> | ||
<th> | |||
{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|{{#set:ancestors_in_cell_lineage_facet=$}}CL:{{#ask:[[id::$]]|?name=|format=list}}|;}} | |||
</th> | |||
<th> | |||
{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|{{#set:ancestors_in_disease_facet=$}}DOID:{{#ask:[[id::$]]|?name=|format=list}}|;}} | |||
</th> | |||
Revision as of 02:15, 4 April 2012
| Name: | {{{name}}} |
|---|---|
| Species: | {{{sample_species}}} |
| Genomic View: | zenbu , UCSC |
| Top activities with MARA |
|---|
|
{{#top_motifs_table01: {{{top_motifs}}}}} |
Details
| Transcriptome | |
| Genomic view | zenbu , UCSC |
|---|---|
| hCAGE | {{{profile_hcage}}} |
| RNA-seq | {{{profile_rnaseq}}} |
| smallRNA seq | {{{profile_srnaseq}}} |
| nanoCAGEscan | {{{profile_cagescan}}} |
| sample detail | |
| species | {{{sample_species}}} |
| strain | {{{sample_strain}}} |
| tissue | {{{sample_tissue}}} |
| dev_stage | {{{sample_dev_stage}}} |
| sex | {{{sample_sex}}} |
| age | {{{sample_age}}} |
| ethnicity | {{{sample_ethnicity}}} |
| cell_type | {{{sample_cell_type}}} |
| cell_line | {{{sample_cell_line}}} |
| collaboration | {{{sample_collaboration}}} |
| Experimental condition | {{{sample_experimental_condition}}} |
| disease | {{{sample_disease}}} |
| cell_lot | {{{sample_cell_lot}}} |
| cell_catalog | {{{sample_cell_catalog}}} |
| company | {{{sample_company}}} |
| donor(cell lot) | {{{sample_donor(cell lot)}}} |
| Note | {{{sample_note}}} |
| RNA info | |
| sample_id | {{{sample_id}}} |
| tube_id | {{{rna_tube_id}}} |
| box | {{{rna_box}}} |
| position | {{{rna_position}}} |
| lot_number | {{{rna_lot_number}}} |
| catalog_number | {{{rna_catalog_number}}} |
| RIN | {{{rna_rin}}} |
| OD260/230 | {{{rna_od260/230}}} |
| OD260/280 | {{{rna_od260/280}}} |
| sample_type | {{{rna_sample_type}}} |
| extraction_protocol | {{{rna_extraction_protocol}}} |
| weight_ug | {{{rna_weight_ug}}} |
| concentration | {{{rna_concentration}}} |
Ancestors in FF ontology
| Anatomy | Cell lineage | Disease |
|---|---|---|
|
UBERON: |
CL: |
Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.DOID: |
