Personal tools

FFCP PHASE1:Mm9::chr2:58998895..58998938,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
Line 1: Line 1:
{{FFCP
{{FFCP
|id=chr2:58998895..58998938,+
|short_description=p1@Pkp4
|description=CAGE_peak_1_at_Pkp4_5end
|association_with_transcript=0bp_to_ENSMUST00000102754,ENSMUST00000123908,ENSMUST00000128233,ENSMUST00000137790,ENSMUST00000168631,ENSMUST00000169005,NM_026361,NM_175464,uc008jsz.1,uc008jta.1,uc008jtb.1,uc008jtc.1,uc008jtd.1_5end
|EntrezGene=227937
|EntrezGene=227937
|HGNC=
|HGNC=
|UniProt=Q68FH0,A2AS44,Q05D18,Q3UIX3,A2AS45
|UniProt=Q68FH0,A2AS44,Q05D18,Q3UIX3,A2AS45
|association_with_transcript=0bp_to_ENSMUST00000102754,ENSMUST00000123908,ENSMUST00000128233,ENSMUST00000137790,ENSMUST00000168631,ENSMUST00000169005,NM_026361,NM_175464,uc008jsz.1,uc008jta.1,uc008jtb.1,uc008jtc.1,uc008jtd.1_5end
|description=CAGE_peak_1_at_Pkp4_5end
|id=chr2:58998895..58998938,+
|ontology_enrichment_disease=
|phase1_expression=18.4171174170513,45.0178275854776,33.2149444754361,38.4129548359674,39.5707626657614,11.9194283057442,10.2789561862031,1.80772652818207,7.32101355188667,10.5329036844897,1.36974374580404,1.27635454392538,0.513602189793617,1.22388563386596,0.999329285446988,0.202475267389826,0.699561878128147,0.630924330716475,0.685572168028694,0,10.6304112688837,0.595745707205312,0.522399578277871,6.55968933452967,7.11168771308227,22.3950466004858,16.7997178502039,15.7293999860699,10.6413114895569,16.6339885641554,5.76499327703792,3.81018404075779,0.61506478758457,0,3.17736781726402,3.49092755252834,4.08338712524738,0,0,0,0.588231488031014,0,0,0.755380907853464,0.709638518536602,2.0190142737785,3.9119567217402,5.66865406589161,3.29529274101708,5.44403717407994,5.17949760013841,11.5002051491977,0.167782606057736,1.45072428402269,2.68875039313971,0.771778308107841,3.72493471920384,4.12537673821954,4.85559506063035,4.23192783417626,3.1691570175309,1.69422266034566,0.889294796111139,2.6996991518442,0,0.7104801149461,0.599200221036809,3.84218305321555,4.66603255388149,3.10513658162888,3.15487442027073,12.2829923293636,16.7860091123226,3.30725157880376,3.35459148563827,2.75765635983006,16.5173821499083,30.2618991261895,26.7275367865864,6.19865552331911,8.5083508550241,4.68822033501084,30.9893128891533,16.8828783009504,27.0452898564954,11.1958862479994,13.2405663143166,7.08317894136142,6.81535739998656,4.08086424576642,7.8263411949453,2.58127163094416,2.03991400112325,10.7940638327563,9.09686984426737,12.5447528387254,8.70755404816862,3.91989741929533,4.67614808285164,4.59341446863442,23.380007682929,2.56652954828636,0,7.11066703153331,4.11332977921307,5.06719730950197,3.53867111510348,15.4148237620731,1.55362730188303,4.15637989381509,4.68410382268567,3.04465478312141,3.92046345335299,3.91878865436819,5.05631440683531,4.14699751387929,4.20231445148436,8.24216334443496,0,4.52947179852746,3.3126227769059,2.90925151881133,7.45567044872489,31.3275452802355,35.6059401582874,15.5828803677241,0.718890747035522,1.19980546198682,1.14363204365758,18.574039286198,23.33253074375,6.40837195775608,18.7730265807659,17.6443665557928,24.9345653471472,22.7137768294861,9.57290020192973,5.84712761867437,9.35074206204597,9.6803253707778,6.63614259109789,5.74755261083682,7.74267158163002,9.64510834148576,16.192686798016,13.7081680704789,12.9308379892426,9.8307280880826,2.58681591519411,1.89106080167819,6.33424046990216,4.3839146485515,8.06337022754234,3.48252166522167,5.96768195583036,4.97585667046233,0.702213187313235,0.51469581422943,1.13665399758237,4.97101854085205,7.97388603935727,12.064158117888,7.33908680314152,14.9540816128027,14.3468414985262,16.9749779667798,18.5108646965737,21.8351190226607,18.1015834904828,16.7450813360677,18.8079638146385,17.5439984910399,8.34290438105992,19.1915178827332,19.9775451135921,8.64398743985989,19.1642894130603,14.8092317331585,4.05247676016945,6.27039014023184,4.38149368495117,6.85723983719365,5.55945109612176,10.2721838100782,18.506633400236,12.0230236948528,15.5827829456167,13.5290400987983,14.2323783596958,19.7740269903929,11.4553166433588,15.5330193138406,3.98302592001472,6.28366819353509,4.50830942692322,7.33144780243131,7.17624202520215,12.9751266797089,17.2635746349222,45.7591458736767,39.0926832325023,38.7467094714454,18.3800628794032,5.00535317148282,3.93117990226406,5.39669069723649,4.46292267054706,4.3411888755435,5.0925170356284,6.04161888646702,5.35046248357617,6.58947391651396,12.9391385874619,15.2577788544086,8.7370548472077,15.912469310668,9.86685774370517,20.7450714186248,8.86815312799702,6.63219941196697,7.65935389277522,11.712410918488,11.0304416695596,9.5478566741835,8.56957107189649,11.5128852236101,8.35466263762812,11.5161638617363,12.2780171866265,10.4872521418072,12.2606337124786,12.43981903801,6.03165135757089,2.17562273527484,2.45882136509518,5.24279817978992,41.1009510368747,37.507739709505,2.95082901678016,6.31177318010932,3.15508219416257,1.95219372148319,3.44677436372478,2.15071918157297,3.34198011123591,1.69845918473299,3.64329631507405,3.50707029493574,4.34816555741176,13.8168166061377,5.10984306749767,5.52003371368491,7.65568708961808,8.41347627159931,3.98235415019888,3.64170954232472,4.83717691143602,5.84675747243284,3.54362271456927,4.91896236710284,11.1124166062335,12.3601468022352,10.3384239731569,9.16506598013866,7.37930260024991,20.6271086496374,9.19186935535228,7.56256594931503,3.75140182969988,4.92975180572662,3.54680467284547,6.0645397984704,6.91105886528908,5.48036908406279,2.81606049676452,3.60114520468494,18.5243854366168,6.10079135883476,10.8181165886257,8.56443533979813,7.87857470420701,8.20704498725306,19.2377352175701,49.1377050327851,2.39219233116994,3.50857675537478,3.33350149265481,1.31857919903284,1.6403307326523,2.51655990527175,2.03974115992626,2.93898049879682,2.62579950228405,4.77335309007557,4.4287039101359,8.74273708645449,11.2325554454673,10.8725913927524,10.6997656235627,11.7331981354794,16.7786515122432,17.0141362289619,10.628427809927,42.8724126029979,1.12738587736838,3.73791365109947,3.64008679005615,5.63908446197738,5.29555276258697,6.42033276864957,6.45464812551647,5.208175393758,3.46035836604846,2.17425708743405,1.15212002503146,3.16011120628178,5.0681303822541,6.47079030138412,4.93699127315621,4.65469408735452,3.9736270956253,3.00488623799922,3.83992770653901,3.63479219813331,3.04827226619999,2.31900225814733,3.8983152295901,2.88635524920988,2.80504565235765,5.8949899739955,3.55177525398503,4.84454825691169,3.02192309455341,6.76163579112667,15.3899629869969,13.0037653229758,14.5770497773765,9.02829787263654,7.90652579663893,6.90487854760765,4.58316410751517,7.21783365843488,6.85082519770642,4.5323633843382,7.42524750254986,4.05289082901798,6.34399372577886,9.31968561153276,4.25528125095124,4.38927360741134,4.60980735536162,7.53630822911712,5.8691685535835,6.06683577885047,6.22290837844523,6.38708677440572,5.45562656306086,9.34979683526051,7.60437899670719,7.54505365544305,6.9294715527713,6.08238947846258,6.54764346093991,1.90517476513229,8.11190281613988,11.3816440073586,8.24171801606613,7.94874168725746,5.48590803816665,9.40621772644489,9.77588378784016,8.57543858130738,7.0582035311498,9.05376304440939,8.96347067076586,4.20911538300549,8.41985505844343,5.61142271657738,8.42308628681636,8.76689893142515,6.95692773388472,7.90177890048427,7.13754460630223,8.49355964989016,6.78401664491684,9.66919743217342,9.18183993930448,5.07360263974886,5.10109238364927
|phase1_expression=18.4171174170513,45.0178275854776,33.2149444754361,38.4129548359674,39.5707626657614,11.9194283057442,10.2789561862031,1.80772652818207,7.32101355188667,10.5329036844897,1.36974374580404,1.27635454392538,0.513602189793617,1.22388563386596,0.999329285446988,0.202475267389826,0.699561878128147,0.630924330716475,0.685572168028694,0,10.6304112688837,0.595745707205312,0.522399578277871,6.55968933452967,7.11168771308227,22.3950466004858,16.7997178502039,15.7293999860699,10.6413114895569,16.6339885641554,5.76499327703792,3.81018404075779,0.61506478758457,0,3.17736781726402,3.49092755252834,4.08338712524738,0,0,0,0.588231488031014,0,0,0.755380907853464,0.709638518536602,2.0190142737785,3.9119567217402,5.66865406589161,3.29529274101708,5.44403717407994,5.17949760013841,11.5002051491977,0.167782606057736,1.45072428402269,2.68875039313971,0.771778308107841,3.72493471920384,4.12537673821954,4.85559506063035,4.23192783417626,3.1691570175309,1.69422266034566,0.889294796111139,2.6996991518442,0,0.7104801149461,0.599200221036809,3.84218305321555,4.66603255388149,3.10513658162888,3.15487442027073,12.2829923293636,16.7860091123226,3.30725157880376,3.35459148563827,2.75765635983006,16.5173821499083,30.2618991261895,26.7275367865864,6.19865552331911,8.5083508550241,4.68822033501084,30.9893128891533,16.8828783009504,27.0452898564954,11.1958862479994,13.2405663143166,7.08317894136142,6.81535739998656,4.08086424576642,7.8263411949453,2.58127163094416,2.03991400112325,10.7940638327563,9.09686984426737,12.5447528387254,8.70755404816862,3.91989741929533,4.67614808285164,4.59341446863442,23.380007682929,2.56652954828636,0,7.11066703153331,4.11332977921307,5.06719730950197,3.53867111510348,15.4148237620731,1.55362730188303,4.15637989381509,4.68410382268567,3.04465478312141,3.92046345335299,3.91878865436819,5.05631440683531,4.14699751387929,4.20231445148436,8.24216334443496,0,4.52947179852746,3.3126227769059,2.90925151881133,7.45567044872489,31.3275452802355,35.6059401582874,15.5828803677241,0.718890747035522,1.19980546198682,1.14363204365758,18.574039286198,23.33253074375,6.40837195775608,18.7730265807659,17.6443665557928,24.9345653471472,22.7137768294861,9.57290020192973,5.84712761867437,9.35074206204597,9.6803253707778,6.63614259109789,5.74755261083682,7.74267158163002,9.64510834148576,16.192686798016,13.7081680704789,12.9308379892426,9.8307280880826,2.58681591519411,1.89106080167819,6.33424046990216,4.3839146485515,8.06337022754234,3.48252166522167,5.96768195583036,4.97585667046233,0.702213187313235,0.51469581422943,1.13665399758237,4.97101854085205,7.97388603935727,12.064158117888,7.33908680314152,14.9540816128027,14.3468414985262,16.9749779667798,18.5108646965737,21.8351190226607,18.1015834904828,16.7450813360677,18.8079638146385,17.5439984910399,8.34290438105992,19.1915178827332,19.9775451135921,8.64398743985989,19.1642894130603,14.8092317331585,4.05247676016945,6.27039014023184,4.38149368495117,6.85723983719365,5.55945109612176,10.2721838100782,18.506633400236,12.0230236948528,15.5827829456167,13.5290400987983,14.2323783596958,19.7740269903929,11.4553166433588,15.5330193138406,3.98302592001472,6.28366819353509,4.50830942692322,7.33144780243131,7.17624202520215,12.9751266797089,17.2635746349222,45.7591458736767,39.0926832325023,38.7467094714454,18.3800628794032,5.00535317148282,3.93117990226406,5.39669069723649,4.46292267054706,4.3411888755435,5.0925170356284,6.04161888646702,5.35046248357617,6.58947391651396,12.9391385874619,15.2577788544086,8.7370548472077,15.912469310668,9.86685774370517,20.7450714186248,8.86815312799702,6.63219941196697,7.65935389277522,11.712410918488,11.0304416695596,9.5478566741835,8.56957107189649,11.5128852236101,8.35466263762812,11.5161638617363,12.2780171866265,10.4872521418072,12.2606337124786,12.43981903801,6.03165135757089,2.17562273527484,2.45882136509518,5.24279817978992,41.1009510368747,37.507739709505,2.95082901678016,6.31177318010932,3.15508219416257,1.95219372148319,3.44677436372478,2.15071918157297,3.34198011123591,1.69845918473299,3.64329631507405,3.50707029493574,4.34816555741176,13.8168166061377,5.10984306749767,5.52003371368491,7.65568708961808,8.41347627159931,3.98235415019888,3.64170954232472,4.83717691143602,5.84675747243284,3.54362271456927,4.91896236710284,11.1124166062335,12.3601468022352,10.3384239731569,9.16506598013866,7.37930260024991,20.6271086496374,9.19186935535228,7.56256594931503,3.75140182969988,4.92975180572662,3.54680467284547,6.0645397984704,6.91105886528908,5.48036908406279,2.81606049676452,3.60114520468494,18.5243854366168,6.10079135883476,10.8181165886257,8.56443533979813,7.87857470420701,8.20704498725306,19.2377352175701,49.1377050327851,2.39219233116994,3.50857675537478,3.33350149265481,1.31857919903284,1.6403307326523,2.51655990527175,2.03974115992626,2.93898049879682,2.62579950228405,4.77335309007557,4.4287039101359,8.74273708645449,11.2325554454673,10.8725913927524,10.6997656235627,11.7331981354794,16.7786515122432,17.0141362289619,10.628427809927,42.8724126029979,1.12738587736838,3.73791365109947,3.64008679005615,5.63908446197738,5.29555276258697,6.42033276864957,6.45464812551647,5.208175393758,3.46035836604846,2.17425708743405,1.15212002503146,3.16011120628178,5.0681303822541,6.47079030138412,4.93699127315621,4.65469408735452,3.9736270956253,3.00488623799922,3.83992770653901,3.63479219813331,3.04827226619999,2.31900225814733,3.8983152295901,2.88635524920988,2.80504565235765,5.8949899739955,3.55177525398503,4.84454825691169,3.02192309455341,6.76163579112667,15.3899629869969,13.0037653229758,14.5770497773765,9.02829787263654,7.90652579663893,6.90487854760765,4.58316410751517,7.21783365843488,6.85082519770642,4.5323633843382,7.42524750254986,4.05289082901798,6.34399372577886,9.31968561153276,4.25528125095124,4.38927360741134,4.60980735536162,7.53630822911712,5.8691685535835,6.06683577885047,6.22290837844523,6.38708677440572,5.45562656306086,9.34979683526051,7.60437899670719,7.54505365544305,6.9294715527713,6.08238947846258,6.54764346093991,1.90517476513229,8.11190281613988,11.3816440073586,8.24171801606613,7.94874168725746,5.48590803816665,9.40621772644489,9.77588378784016,8.57543858130738,7.0582035311498,9.05376304440939,8.96347067076586,4.20911538300549,8.41985505844343,5.61142271657738,8.42308628681636,8.76689893142515,6.95692773388472,7.90177890048427,7.13754460630223,8.49355964989016,6.78401664491684,9.66919743217342,9.18183993930448,5.07360263974886,5.10109238364927
|short_description=p1@Pkp4
}}
}}

Revision as of 10:26, 18 April 2012

Short description:p1@Pkp4
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Pkp4_5end
Coexpression cluster:NA
Association with transcript: 0bp_to_ENSMUST00000102754, ENSMUST00000123908, ENSMUST00000128233, ENSMUST00000137790, ENSMUST00000168631, ENSMUST00000169005, NM_026361, NM_175464, uc008jsz.1, uc008jta.1, uc008jtb.1, uc008jtc.1, uc008jtd.1_5end
EntrezGene:Pkp4
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Pkp4

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G718.42
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I545.02
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I633.21
CD326+ enterocyte, pool1.CNhs13542.11848-124I338.41
CD326+ enterocyte, pool2.CNhs13197.11849-124I439.57
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I711.92
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I810.28
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E91.81
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E77.32
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F210.53
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E61.37
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F11.28
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.51
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E81.22
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A11.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.20
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.70
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.63
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.69
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A310.63
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.60
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.52
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D16.56
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D27.11
GP2+ M cell, pool1.CNhs13228.11845-124H922.40
GP2+ M cell, pool2.CNhs13231.11846-124I116.80
GP2+ M cell, pool3.CNhs13240.11847-124I215.73
Ileum epithelium, pool1.CNhs13199.10252-104B910.64
Ileum epithelium, pool2.CNhs13232.10253-104C116.63
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C85.76
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I33.81
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.62
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F53.18
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F63.49
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F74.08
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.59
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.76
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.71
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B32.02
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B73.91
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C25.67
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B83.30
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C35.44
Mouse Astrocytes, donor2.CNhs12078.11552-120C45.18
Mouse Astrocytes, donor3.CNhs12107.11633-122C411.50
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.17
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I91.45
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A12.69
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.77
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E13.72
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C54.13
Mouse Granule cells, donor1.CNhs12131.11713-123C34.86
Mouse Granule cells, donor2.CNhs12357.11731-123E34.23
Mouse Granule cells, donor3.CNhs12108.11636-122C73.17
Mouse Meningeal cells, donor1.CNhs12132.11716-123C61.69
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.89
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C72.70
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.71
Mouse Microglia, donor1.CNhs12629.11718-123C80.60
Mouse Microglia, donor2.CNhs12634.11736-123E83.84
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D54.67
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F53.11
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D93.15
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F112.28
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D516.79
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D23.31
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F23.35
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D62.76
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D316.52
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F330.26
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D726.73
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D46.20
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F48.51
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D84.69
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E430.99
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E516.88
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I627.05
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D611.20
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F613.24
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E17.08
Mouse Schwann, donor1.CNhs12507.11728-123D96.82
Mouse Schwann, donor2.CNhs12573.11746-123F94.08
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G37.83
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F72.58
Mouse hepatocyte, donor1.CNhs13078.11714-123C42.04
Mouse hepatocyte, donor3.CNhs12615.11637-122C810.79
Mouse hepatocyte, donor6.CNhs13090.11822-124F49.10
Mouse hepatocyte, donor8.CNhs13091.11824-124F612.54
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A78.71
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I73.92
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E34.68
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I84.59
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G623.38
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H12.57
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B67.11
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G14.11
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G25.07
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G33.54
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B615.41
accessory axillary lymph node, adult.CNhs10475.1063-29H91.55
adrenal gland, adult.CNhs10508.49-24D74.16
adrenal gland, embryo E14.CNhs11038.406-44C54.68
adrenal gland, embryo E16.CNhs11004.1254-43D63.04
adrenal gland, embryo E17.CNhs11043.1263-45I13.92
adrenal gland, embryo E18.CNhs11026.1262-18F53.92
adrenal gland, neonate N00.CNhs11191.1311-23C15.06
adrenal gland, neonate N25.CNhs11223.1377-27I34.15
amnion, adult pregnant day17.5.CNhs10488.583-22A84.20
aorta, adult.CNhs10498.46-23H18.24
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F54.53
bone (os femoris), neonate N16.CNhs11225.1525-43A63.31
bone (os femoris), neonate N20.CNhs11195.1350-25C32.91
cecum, adult.CNhs10467.37-13H47.46
cerebellum, adult.CNhs10494.15-8B231.33
cerebellum, neonate N30.CNhs11135.1395-42I235.61
colon, adult.CNhs10468.36-18H715.58
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.72
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D11.20
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D41.14
corpora quadrigemina, adult.CNhs10501.16-22A418.57
corpus striatum, adult.CNhs10487.19-21D823.33
corpus striatum, neonate N00.CNhs11226.630-43F16.41
cortex, adult.CNhs10473.12-14D518.77
cortex, neonate N30.CNhs11107.1392-42F217.64
diencephalon, adult.CNhs10482.20-12F224.93
diencephalon, neonate N30.CNhs11201.1388-42B222.71
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B19.57
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A25.85
epididymis, adult.CNhs10490.58-23B29.35
eyeball, adult.CNhs10484.31-12G49.68
eyeball, embryo E12.CNhs11016.345-16C66.64
eyeball, embryo E14.CNhs10521.399-16E25.75
eyeball, embryo E15.CNhs10593.426-16C97.74
eyeball, embryo E17.CNhs11023.1261-18D49.65
eyeball, neonate N00.CNhs11207.633-15C616.19
eyeball, neonate N01.CNhs11140.1532-43E713.71
eyeball, neonate N02.CNhs11205.1551-44G812.93
eyeball, neonate N16.CNhs11188.777-19A29.83
forelimb, embryo E11.CNhs10596.335-25E22.59
forelimb, embryo E12.CNhs10600.359-14H21.89
forelimb, embryo E13.CNhs10589.384-1E26.33
forelimb, embryo E14.CNhs10577.413-26A84.38
forelimb, embryo E15.CNhs11007.437-20E78.06
forelimb, embryo E17.CNhs10598.1517-43C43.48
forelimb, embryo E18.CNhs11008.1520-43B55.97
gonad, embryo E13.CNhs11044.1564-45I64.98
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.70
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.51
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D51.14
heart, embryo E11.CNhs10586.331-24E94.97
heart, embryo E12.CNhs11015.353-12F57.97
heart, embryo E13.CNhs11013.376-3I912.06
heart, embryo E14.CNhs10597.403-26D47.34
heart, embryo E15.CNhs11017.431-16C814.95
heart, embryo E16.CNhs11021.457-17C614.35
heart, embryo E17.CNhs11025.479-18E516.97
heart, embryo E18.CNhs11030.1283-20G318.51
heart, neonate N00.CNhs11213.639-21E321.84
heart, neonate N03.CNhs11221.1349-25I218.10
heart, neonate N10.CNhs11118.749-24G116.75
heart, neonate N16.CNhs11209.782-15G118.81
heart, neonate N20.CNhs11127.821-26I617.54
heart, neonate N25.CNhs11196.1351-25D38.34
heart, neonate N30.CNhs11202.1390-42D219.19
hippocampus, adult.CNhs10478.13-16E819.98
hippocampus, neonate N00.CNhs11228.627-43G18.64
intestinal mucosa, adult.CNhs10506.860-29I319.16
intestine, adult.CNhs10496.178-9A314.81
intestine, embryo E12.CNhs11019.1251-16I54.05
intestine, embryo E13.CNhs11010.381-16D56.27
intestine, embryo E15.CNhs10602.976-16D84.38
intestine, embryo E16.CNhs10585.463-22H46.86
intestine, embryo E17.CNhs10582.482-18D35.56
intestine, embryo E18.CNhs10526.1289-20F710.27
intestine, neonate N00.CNhs11126.644-26D118.51
intestine, neonate N01.CNhs11192.1322-23E912.02
intestine, neonate N06.CNhs11102.688-20B815.58
intestine, neonate N07.CNhs11095.720-20F213.53
intestine, neonate N10.CNhs11098.755-23A514.23
intestine, neonate N20.CNhs11187.827-18D119.77
intestine, neonate N25.CNhs11121.1352-25E311.46
intestine, neonate N30.CNhs11131.1384-42G115.53
kidney, embryo E14.CNhs10606.411-4I93.98
kidney, embryo E15.CNhs10997.434-16F86.28
kidney, embryo E16.CNhs10584.464-22A54.51
kidney, embryo E17.CNhs11028.483-18I27.33
kidney, embryo E18.CNhs11001.1288-20C77.18
kidney, neonate N00.CNhs11214.646-21G712.98
kidney, neonate N10.CNhs11206.758-6D517.26
kidney, neonate N20.CNhs11113.832-19I145.76
kidney, neonate N25.CNhs11122.1353-25F339.09
kidney, neonate N30.CNhs11203.1385-42H138.75
liver, adult pregnant day01.CNhs10466.508-5B218.38
liver, embryo E12.CNhs10601.355-15F85.01
liver, embryo E13.CNhs10524.378-3H63.93
liver, embryo E14.CNhs10594.409-16E15.40
liver, embryo E15.CNhs10520.433-16D74.46
liver, embryo E16.CNhs10523.462-17F54.34
liver, embryo E17.CNhs10510.481-18A35.09
liver, embryo E18.CNhs10579.499-43G46.04
liver, neonate N00.CNhs11117.641-24F45.35
liver, neonate N03.CNhs11123.1345-25G26.59
liver, neonate N06.CNhs11101.684-20A812.94
liver, neonate N07.CNhs11103.716-20H215.26
liver, neonate N10.CNhs11115.751-24B98.74
liver, neonate N20.CNhs11220.823-25A315.91
liver, neonate N25.CNhs11198.1368-26H19.87
liver, neonate N30.CNhs11106.1382-42D120.75
lung, adult.CNhs10474.28-22B18.87
lung, embryo E12.CNhs10522.354-16G26.63
lung, embryo E14.CNhs10604.404-26F87.66
lung, embryo E15.CNhs11020.432-17C511.71
lung, embryo E16.CNhs10998.458-17B611.03
lung, embryo E17.CNhs10605.480-44A69.55
lung, embryo E18.CNhs10583.1287-20I68.57
lung, neonate N00.CNhs11224.640-42C611.51
lung, neonate N06.CNhs11212.683-20E58.35
lung, neonate N07.CNhs11111.715-19A311.52
lung, neonate N10.CNhs11219.750-23E612.28
lung, neonate N20.CNhs11109.822-18A410.49
lung, neonate N25.CNhs11119.1359-25C712.26
lung, neonate N30.CNhs11133.1394-42H212.44
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A16.03
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A12.18
mammary gland, adult lactating day02.CNhs10480.595-22B62.46
mammary gland, adult pregnant day19.CNhs10476.588-5H25.24
medulla oblongata, adult.CNhs10477.17-12C241.10
medulla oblongata, neonate N30.CNhs11200.1396-42A337.51
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C72.95
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C26.31
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E13.16
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E21.95
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E33.45
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D72.15
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D83.34
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D91.70
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D43.64
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D53.51
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D64.35
olfactory brain, adult.CNhs10489.18-22I913.82
ovary, adult.CNhs10507.91-2I75.11
ovary, embryo E18.CNhs11040.505-44H75.52
ovary, neonate N00.CNhs11217.1299-22I47.66
oviduct, adult pregnant day01.CNhs10500.988-6G68.41
pancreas, adult.CNhs10486.34-16E43.98
pancreas, embryo E14.CNhs11012.405-44F43.64
pancreas, embryo E15.CNhs11042.1556-45F24.84
pancreas, embryo E16.CNhs11003.460-26E55.85
pancreas, embryo E17.CNhs10599.1558-45G33.54
pancreas, embryo E18.CNhs10580.1535-43I74.92
pancreas, neonate N00.CNhs11105.645-26G911.11
pancreas, neonate N01.CNhs11138.1531-43D712.36
pancreas, neonate N02.CNhs11139.1539-43D810.34
pancreas, neonate N16.CNhs11136.787-43B69.17
pancreas, neonate N25.CNhs11094.1555-45E27.38
pancreas, neonate N30.CNhs11182.1548-44H520.63
pituitary gland, adult.CNhs10493.21-1G89.19
pituitary gland, embryo E12.CNhs11018.346-16E67.56
pituitary gland, embryo E13.CNhs11009.370-44C73.75
pituitary gland, embryo E14.CNhs11037.398-44A54.93
pituitary gland, embryo E15.CNhs10592.427-16B93.55
pituitary gland, embryo E16.CNhs11036.449-43F66.06
pituitary gland, embryo E17.CNhs11039.1265-44F56.91
pituitary gland, neonate N00.CNhs11190.1308-22E95.48
placenta, adult pregnant day10.CNhs10472.539-13I72.82
placenta, adult pregnant day17.CNhs10464.577-18G33.60
prostate, adult.CNhs10470.859-1F818.52
skin, adult.CNhs10492.30-1C36.10
skin, neonate N00.CNhs11124.650-25G410.82
skin, neonate N03.CNhs11215.662-22H38.56
skin, neonate N06.CNhs11097.693-20I57.88
skin, neonate N10.CNhs11108.762-6C48.21
small intestine, neonate N16.CNhs11114.790-21I119.24
spinal cord, adult.CNhs10505.24-13C949.14
spleen, adult.CNhs10465.25-2G22.39
spleen, embryo E16.CNhs11035.461-43C13.51
spleen, embryo E18.CNhs11011.1271-21F23.33
spleen, neonate N10.CNhs11116.752-24D11.32
spleen, neonate N20.CNhs11112.824-19H11.64
spleen, neonate N25.CNhs11099.1354-25G32.52
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C62.04
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C92.94
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D32.63
stomach, adult.CNhs10503.33-1H64.77
stomach, embryo E12.CNhs10588.356-43E34.43
stomach, embryo E15.CNhs10603.1252-16G88.74
stomach, embryo E16.CNhs11022.459-17D411.23
stomach, embryo E17.CNhs11006.1035-18D510.87
stomach, embryo E18.CNhs10999.1286-20C610.70
stomach, neonate N03.CNhs11193.1340-24B811.73
stomach, neonate N07.CNhs11210.718-18A916.78
stomach, neonate N25.CNhs11104.1355-25E417.01
stomach, neonate N30.CNhs11134.1386-42I110.63
submandibular gland, adult.CNhs10469.59-29C142.87
testis, adult.CNhs10504.57-7G51.13
testis, embryo E13.CNhs11031.389-23F53.74
testis, embryo E15.CNhs11034.443-27C53.64
testis, embryo E16.CNhs11033.470-26G55.64
testis, embryo E17.CNhs11029.486-18I55.30
testis, embryo E18.CNhs11027.503-18G56.42
testis, neonate N00.CNhs11189.1300-22B76.45
testis, neonate N07.CNhs11222.726-26I45.21
testis, neonate N10.CNhs11204.763-44D93.46
testis, neonate N20.CNhs11110.839-18H32.17
testis, neonate N30.CNhs11130.1391-42E21.15
thymus, adult.CNhs10471.38-12B53.16
thymus, embryo E14.CNhs11041.402-44I45.07
thymus, embryo E15.CNhs11005.430-45I26.47
thymus, embryo E16.CNhs11002.456-26C54.94
thymus, embryo E17.CNhs10581.478-18C14.65
thymus, embryo E18.CNhs10595.1273-19G43.97
thymus, neonate N02.CNhs11181.1541-43F83.00
thymus, neonate N03.CNhs11137.2104-43C73.84
thymus, neonate N06.CNhs11197.681-26C43.63
thymus, neonate N07.CNhs11211.713-19D33.05
thymus, neonate N10.CNhs11194.748-24E42.32
thymus, neonate N20.CNhs11186.820-7A23.90
thymus, neonate N25.CNhs11125.1362-25G72.89
thymus, neonate N30.CNhs11132.1393-42G22.81
tongue, adult.CNhs10499.32-1B45.89
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H33.55
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F74.84
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G53.02
urinary bladder, adult.CNhs10481.879-12E46.76
uterus, adult pregnant day19.CNhs10497.590-15F515.39
uterus, adult.CNhs10509.92-27E513.00
vagina, adult.CNhs10502.89-27D514.58
vesicular gland, adult.CNhs10491.51-27F89.03
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A17.91
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A26.90
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A34.58
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D77.22
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A46.85
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A54.53
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A67.43
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A74.05
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A86.34
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A99.32
whole body, embryo E11.CNhs11014.324-5I84.26
whole body, embryo E12.CNhs10587.857-27C94.39
whole body, embryo E13.CNhs10512.372-23H24.61
whole body, embryo E14.5.CNhs10578.420-27D27.54
whole body, embryo E14.CNhs10519.395-14B15.87
whole body, embryo E16.CNhs10514.453-14F26.07
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G56.22
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G56.39
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G55.46
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G59.35
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G57.60
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G57.55
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G56.93
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G56.08
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G56.55
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G51.91
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G58.11
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G511.38
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G58.24
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G57.95
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G55.49
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G59.41
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G59.78
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G58.58
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G57.06
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G59.05
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G58.96
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G54.21
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G58.42
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G55.61
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G58.42
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G58.77
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G56.96
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G57.90
whole body, embryo E17.5.CNhs10513.490-9F97.14
whole body, embryo E17.CNhs10517.475-3I58.49
whole body, embryo E18.CNhs10516.493-3B36.78
whole body, neonate N00.CNhs10525.657-19C29.67
whole body, neonate N01.CNhs10576.659-23C69.18
whole body, neonate N06.CNhs10515.692-21D15.07
whole body, neonate N10.CNhs10518.761-6B45.10





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen


Uber anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen







Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr2:58998895..58998938,%2B&oldid=866916"