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{{CL
{{CL
|id=CL:1000280
|alt_id=
|name=smooth muscle cell of colon
|namespace=cell
|def="A smooth muscle cell that is part of the colon." [GOC:tfm]
|xref=FMA:15663
|is_a=CL:0002504
|synonym="non-striated muscle fiber of colon" EXACT [FMA:15663]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A smooth muscle cell that is part of the colon." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:1000280
|is_a=CL:1000279
|is_obsolete=
|located_in=
|located_in=
|name=smooth muscle cell of colon
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001155
|part_of=UBERON:0001155
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="non-striated muscle fiber of colon" EXACT [FMA:15663]
|union_of=
|xref=FMA:15663
}}
}}

Latest revision as of 16:46, 12 September 2014

Name:smooth muscle cell of colon
Namespace:FANTOM
Definition:"A smooth muscle cell that is part of the colon." [GOC:tfm]
Xrefs:
links:
FMA:15663
Synonyms: "non-striated muscle fiber of colon" EXACT [FMA:15663]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:1000279(smooth muscle cell of large intestine)
part_of:UBERON:0001155(colon)



Children


derives from:FF:0000181 (human smooth muscle of colon sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000280 (smooth muscle cell of colon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr12:52473515..52473526,+#_2ad417faac8e48c510ddd5173778c2e5p3@ENST00000546390, p3@uc009zme.1
8.98e-131FFCP PHASE1:Hg19::chr12:52473515..52473526,+#_2ad417faac8e48c510ddd5173778c2e5p3@ENST00000546390, p3@uc009zme.1
1.11e-98FFCP PHASE2:Hg19::chr20:49269691..49269695,+#_b17cab7ac0137e6f39fadef260a56d81p1@ENST00000435177
1.11e-98FFCP PHASE1:Hg19::chr20:49269691..49269695,+#_b17cab7ac0137e6f39fadef260a56d81p1@ENST00000435177
4.71e-66FFCP PHASE1:Hg19::chr12:52473502..52473510,+#_bb8298808b46dd5c4b63a2f0974e050ap2@ENST00000546390, p2@uc009zme.1
4.71e-66FFCP PHASE2:Hg19::chr12:52473502..52473510,+#_bb8298808b46dd5c4b63a2f0974e050ap2@ENST00000546390, p2@uc009zme.1
7.24e-50FFCP PHASE2:Hg19::chr3:177652390..177652395,+#_9c82a7ff3660dce9afec0da83fbb5675p1@ENST00000450500
7.24e-50FFCP PHASE1:Hg19::chr3:177652390..177652395,+#_9c82a7ff3660dce9afec0da83fbb5675p1@ENST00000450500
6.47e-47FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_d3398a3f28365609bbf41746fe258c4cp@chr13:94958134..94958164, +
6.47e-47FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_d3398a3f28365609bbf41746fe258c4cp@chr13:94958134..94958164, +
8.55e-40FFCP PHASE2:Hg19::chr2:114300263..114300269,-#_1da6c7ea075b368865caddbcfc1899b2p1@ENST00000416758
8.55e-40FFCP PHASE1:Hg19::chr2:114300263..114300269,-#_1da6c7ea075b368865caddbcfc1899b2p1@ENST00000416758
9.77e-40FFCP PHASE2:Hg19::chr16:86229885..86229905,+#_c921f9ef81a666c8d3384f3e9d74ea37p@chr16:86229885..86229905, +
9.77e-40FFCP PHASE1:Hg19::chr16:86229885..86229905,+#_c921f9ef81a666c8d3384f3e9d74ea37p@chr16:86229885..86229905, +
2.95e-37FFCP PHASE2:Hg19::chr16:86229916..86229943,+#_20a65d2d464f336e6b692165151b2551p@chr16:86229916..86229943, +
2.95e-37FFCP PHASE1:Hg19::chr16:86229916..86229943,+#_20a65d2d464f336e6b692165151b2551p@chr16:86229916..86229943, +
9.1e-34FFCP PHASE1:Hg19::chr6:31304866..31304870,-#_3a77194d9e3920b96c4ed9d3fa4cc31ap@chr6:31304866..31304870, -
9.1e-34FFCP PHASE2:Hg19::chr6:31304866..31304870,-#_3a77194d9e3920b96c4ed9d3fa4cc31ap@chr6:31304866..31304870, -
4.53e-30FFCP PHASE2:Hg19::chr8:120079398..120079416,+#_e50b2666ed7fca121133d9ad71dcc5f8p3@COLEC10
4.53e-30FFCP PHASE1:Hg19::chr8:120079398..120079416,+#_e50b2666ed7fca121133d9ad71dcc5f8p3@COLEC10
4.07e-27FFCP PHASE2:Hg19::chr6:134210625..134210636,+#_c48893b0c614676a7f13772c54767ee7p6@TCF21
4.07e-27FFCP PHASE1:Hg19::chr6:134210625..134210636,+#_c48893b0c614676a7f13772c54767ee7p6@TCF21
7.88e-27FFCP PHASE2:Hg19::chr18:77557973..77557984,+#_e77c07e4036bf34bfe3846299b4968e2p@chr18:77557973..77557984, +
7.88e-27FFCP PHASE1:Hg19::chr18:77557973..77557984,+#_e77c07e4036bf34bfe3846299b4968e2p@chr18:77557973..77557984, +
5.75e-26FFCP PHASE2:Hg19::chr1:78401534..78401545,+#_193a33ca706a42eb8a3f42107cc2c7c7p@chr1:78401534..78401545, +
5.75e-26FFCP PHASE1:Hg19::chr1:78401534..78401545,+#_193a33ca706a42eb8a3f42107cc2c7c7p@chr1:78401534..78401545, +
2.34e-25FFCP PHASE2:Hg19::chr15:50149374..50149385,+#_54ab4938ace0964a41303b033a4e0e65p@chr15:50149374..50149385, +
2.34e-25FFCP PHASE1:Hg19::chr15:50149374..50149385,+#_54ab4938ace0964a41303b033a4e0e65p@chr15:50149374..50149385, +
2.64e-25FFCP PHASE1:Hg19::chr3:150966773..150966784,-#_d8d7d42d6c5e44c7d6ccacc9a7bd3933p7@P2RY14
2.64e-25FFCP PHASE2:Hg19::chr7:136759435..136759447,+#_d8d7d42d6c5e44c7d6ccacc9a7bd3933p@chr7:136759435..136759447, +
2.64e-25FFCP PHASE1:Hg19::chr7:136759435..136759447,+#_d8d7d42d6c5e44c7d6ccacc9a7bd3933p@chr7:136759435..136759447, +
2.64e-25FFCP PHASE2:Hg19::chr3:150966773..150966784,-#_d8d7d42d6c5e44c7d6ccacc9a7bd3933p7@P2RY14
6.22e-25FFCP PHASE2:Hg19::chr5:10237680..10237685,+#_2d3439050f2ecd5dff8b8eae839ba560p@chr5:10237680..10237685, +
6.22e-25FFCP PHASE1:Hg19::chr5:10237680..10237685,+#_2d3439050f2ecd5dff8b8eae839ba560p@chr5:10237680..10237685, +
3.62e-24FFCP PHASE2:Hg19::chr4:1167293..1167308,-#_01ca8bbf6e9713d702ee88e873c2e25ep18@SPON2
3.62e-24FFCP PHASE1:Hg19::chr4:1167293..1167308,-#_01ca8bbf6e9713d702ee88e873c2e25ep18@SPON2
5.35e-24FFCP PHASE2:Hg19::chr16:86229728..86229756,+#_3ad79b83e9621be4b73874dd882e7e4bp@chr16:86229728..86229756, +
5.35e-24FFCP PHASE1:Hg19::chr16:86229728..86229756,+#_3ad79b83e9621be4b73874dd882e7e4bp@chr16:86229728..86229756, +
1.88e-23FFCP PHASE2:Hg19::chr3:150966718..150966738,-#_066140910d597e07ce356f133ca17700p9@P2RY14
1.88e-23FFCP PHASE1:Hg19::chr3:150966718..150966738,-#_066140910d597e07ce356f133ca17700p9@P2RY14
2.62e-23FFCP PHASE2:Hg19::chr8:109482025..109482032,+#_badcb449b5cf457fc52a99d135b56c0fp@chr8:109482025..109482032, +
2.62e-23FFCP PHASE1:Hg19::chr8:109482025..109482032,+#_badcb449b5cf457fc52a99d135b56c0fp@chr8:109482025..109482032, +
3.09e-23FFCP PHASE2:Hg19::chr4:120549834..120549846,-#_eb23ba9035383407e0726a4b1b21ec73p15@PDE5A
3.09e-23FFCP PHASE1:Hg19::chr4:120549834..120549846,-#_eb23ba9035383407e0726a4b1b21ec73p15@PDE5A
4.66e-22FFCP PHASE2:Hg19::chr9:113137742..113137746,-#_6ca5da21852c720fb9cfde7cc7cda8ebp@chr9:113137742..113137746, -
4.66e-22FFCP PHASE1:Hg19::chr9:113137742..113137746,-#_6ca5da21852c720fb9cfde7cc7cda8ebp@chr9:113137742..113137746, -
1.59e-21FFCP PHASE2:Hg19::chr3:150966697..150966714,-#_2bca9f60b7632c005185b2ee9286612bp8@P2RY14
1.59e-21FFCP PHASE1:Hg19::chr3:150966697..150966714,-#_2bca9f60b7632c005185b2ee9286612bp8@P2RY14
1.76e-21FFCP PHASE1:Hg19::chr3:150966861..150966873,-#_097870e4b71a3649c5d676c9bde4d0d4p6@P2RY14
1.76e-21FFCP PHASE2:Hg19::chr3:150966861..150966873,-#_097870e4b71a3649c5d676c9bde4d0d4p6@P2RY14
2.67e-21FFCP PHASE1:Hg19::chr18:77557932..77557943,+#_47851cb201f5179223165979d1456a2cp@chr18:77557932..77557943, +
2.67e-21FFCP PHASE2:Hg19::chr18:77557932..77557943,+#_47851cb201f5179223165979d1456a2cp@chr18:77557932..77557943, +
5.41e-21FFCP PHASE1:Hg19::chr1:246151834..246151867,-#_3933fb540058c2d3f58ff11b2c21edd8p4@SMYD3
5.41e-21FFCP PHASE2:Hg19::chr1:246151834..246151867,-#_3933fb540058c2d3f58ff11b2c21edd8p4@SMYD3
7.12e-21FFCP PHASE2:Hg19::chr5:52096217..52096226,+#_5331f587918e051f681ee1c4cee16f35p11@PELO
7.12e-21FFCP PHASE1:Hg19::chr5:52096217..52096226,+#_5331f587918e051f681ee1c4cee16f35p11@PELO
7.42e-21FFCP PHASE2:Hg19::chr5:34915414..34915420,+#_d324b08294d56c3a5ce196c45cc31665p4@BRIX1
7.42e-21FFCP PHASE1:Hg19::chr5:34915414..34915420,+#_d324b08294d56c3a5ce196c45cc31665p4@BRIX1
1.07e-20FFCP PHASE2:Hg19::chr8:120079417..120079436,+#_cf9e0674e4b66f47af9abeef5ef95674p2@COLEC10
1.07e-20FFCP PHASE1:Hg19::chr8:120079417..120079436,+#_cf9e0674e4b66f47af9abeef5ef95674p2@COLEC10
5.27e-20FFCP PHASE2:Hg19::chr6:134210095..134210147,-#_52f99020e9c1a2f2876947c1af70f15bp1@uc003qeg.1
5.27e-20FFCP PHASE1:Hg19::chr6:134210095..134210147,-#_52f99020e9c1a2f2876947c1af70f15bp1@uc003qeg.1
6.54e-20FFCP PHASE2:Hg19::chr9:118701892..118701903,+#_66092f0b55ff5a8e96913d379640d5f1p@chr9:118701892..118701903, +
6.54e-20FFCP PHASE1:Hg19::chr9:118701892..118701903,+#_66092f0b55ff5a8e96913d379640d5f1p@chr9:118701892..118701903, +
8.67e-20FFCP PHASE2:Hg19::chr15:50193489..50193500,-#_2f76cbf149e01bcbfea63dd019de5e0fp@chr15:50193489..50193500, -
8.67e-20FFCP PHASE1:Hg19::chr15:50193489..50193500,-#_2f76cbf149e01bcbfea63dd019de5e0fp@chr15:50193489..50193500, -
6.34e-19FFCP PHASE2:Hg19::chr9:118701819..118701835,+#_6618a44a13e4485c037c9b9623858dfap@chr9:118701819..118701835, +
6.34e-19FFCP PHASE1:Hg19::chr9:118701819..118701835,+#_6618a44a13e4485c037c9b9623858dfap@chr9:118701819..118701835, +
2.53e-18FFCP PHASE2:Hg19::chr7:150574212..150574225,-#_b5fb68c6947c8034c298a7515c13fa33p@chr7:150574212..150574225, -
2.53e-18FFCP PHASE1:Hg19::chr7:150574212..150574225,-#_b5fb68c6947c8034c298a7515c13fa33p@chr7:150574212..150574225, -
2.81e-18FFCP PHASE2:Hg19::chr1:246023808..246023820,-#_bdb21505e3a0800cba2087314c253df9p@chr1:246023808..246023820, -
2.81e-18FFCP PHASE1:Hg19::chr1:246023808..246023820,-#_bdb21505e3a0800cba2087314c253df9p@chr1:246023808..246023820, -
9.46e-18FFCP PHASE1:Hg19::chr10:62677334..62677342,-#_a78f404c01d70a5879e3df5f1e43e162p@chr10:62677334..62677342, -
9.46e-18FFCP PHASE2:Hg19::chr4:120546882..120546885,-#_a78f404c01d70a5879e3df5f1e43e162p@chr4:120546882..120546885, -
9.46e-18FFCP PHASE1:Hg19::chr4:120546882..120546885,-#_a78f404c01d70a5879e3df5f1e43e162p@chr4:120546882..120546885, -
9.46e-18FFCP PHASE2:Hg19::chr10:62677334..62677342,-#_a78f404c01d70a5879e3df5f1e43e162p@chr10:62677334..62677342, -
1.21e-17FFCP PHASE1:Hg19::chr11:19441234..19441247,+#_60472a9ce153d60a1c90ee69a7c1229cp@chr11:19441234..19441247, +
1.21e-17FFCP PHASE2:Hg19::chr11:19441234..19441247,+#_60472a9ce153d60a1c90ee69a7c1229cp@chr11:19441234..19441247, +
1.51e-17FFCP PHASE1:Hg19::chr15:80800274..80800278,-#_515cdb06b8b168ed3bd6cce82001809fp@chr15:80800274..80800278, -
1.51e-17FFCP PHASE2:Hg19::chr15:80800274..80800278,-#_515cdb06b8b168ed3bd6cce82001809fp@chr15:80800274..80800278, -
2.0e-17FFCP PHASE2:Hg19::chr1:31842256..31842273,+#_2df567872c27f103b5ac795612db543cp@chr1:31842256..31842273, +
2.0e-17FFCP PHASE1:Hg19::chr1:31842256..31842273,+#_2df567872c27f103b5ac795612db543cp@chr1:31842256..31842273, +
2.07e-17FFCP PHASE2:Hg19::chr18:77557948..77557968,+#_d1012a7a2f5aa5f8efb6547992ddaa69p@chr18:77557948..77557968, +
2.07e-17FFCP PHASE1:Hg19::chr18:77557948..77557968,+#_d1012a7a2f5aa5f8efb6547992ddaa69p@chr18:77557948..77557968, +
3.48e-17FFCP PHASE1:Hg19::chr4:1165106..1165131,-#_31ab81fcbd9f81802c8c8fc04cf35167p15@SPON2
3.48e-17FFCP PHASE2:Hg19::chr4:1165106..1165131,-#_31ab81fcbd9f81802c8c8fc04cf35167p15@SPON2
4.46e-17FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_c62e13d3ce8f527559dbfc56e68fbea4p2@NKX2-3
4.46e-17FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_c62e13d3ce8f527559dbfc56e68fbea4p2@NKX2-3
5.3e-17FFCP PHASE2:Hg19::chr7:136759451..136759469,+#_bbb34935fa30a24d1ff8914042da0dd1p@chr7:136759451..136759469, +
5.3e-17FFCP PHASE1:Hg19::chr7:136759451..136759469,+#_bbb34935fa30a24d1ff8914042da0dd1p@chr7:136759451..136759469, +
8.36e-17FFCP PHASE2:Hg19::chr1:155225028..155225037,-#_d0b6fd9030d9e66a30d13bee37c8c182p7@FAM189B
8.36e-17FFCP PHASE1:Hg19::chr1:155225028..155225037,-#_d0b6fd9030d9e66a30d13bee37c8c182p7@FAM189B
1.05e-16FFCP PHASE2:Hg19::chr8:120079478..120079499,+#_29cdc37bdd8af329c190aa5698c747b3p1@COLEC10
1.05e-16FFCP PHASE1:Hg19::chr8:120079478..120079499,+#_29cdc37bdd8af329c190aa5698c747b3p1@COLEC10
1.88e-16FFCP PHASE2:Hg19::chr4:151503507..151503518,+#_f99c09fbf80ec03225689c89dceec170p6@MAB21L2
1.88e-16FFCP PHASE1:Hg19::chr4:151503507..151503518,+#_f99c09fbf80ec03225689c89dceec170p6@MAB21L2
2.92e-16FFCP PHASE2:Hg19::chr10:101292684..101292706,+#_1638a15a399972d92db91334f61acd49p1@NKX2-3
2.92e-16FFCP PHASE1:Hg19::chr10:101292684..101292706,+#_1638a15a399972d92db91334f61acd49p1@NKX2-3
4.41e-16FFCP PHASE2:Hg19::chr1:21766691..21766715,+#_9a0aef093e1f305ffd8e845e518421a4p3@NBPF3
4.41e-16FFCP PHASE1:Hg19::chr1:21766691..21766715,+#_9a0aef093e1f305ffd8e845e518421a4p3@NBPF3

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