FFCP PHASE1:Mm9::chr1:174128019..174128042,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=176 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:174128019..174128042,- | |||
|description=CAGE_peak_at_chr1:174128019..174128042,- | |description=CAGE_peak_at_chr1:174128019..174128042,- | ||
|id=chr1:174128019..174128042,- | |id=chr1:174128019..174128042,- | ||
|ontology_enrichment_celltype=CL:0000055!5.72e-18!50;CL:0000221!3.48e-16!44;CL:0000133!3.48e-16!44;CL:0002319!8.07e-16!43;CL:0002321!4.81e-12!70;CL:0000220!4.81e-12!70;CL:0000393!2.71e-11!39;CL:0000211!2.71e-11!39;CL:0000117!2.93e-10!23;CL:0000337!2.93e-10!23;CL:0000333!1.98e-09!10;CL:0000095!1.98e-09!10;CL:0000243!1.98e-09!10;CL:0000123!1.98e-09!10;CL:0000125!1.98e-09!10;CL:0000030!1.98e-09!10;CL:0000339!1.98e-09!10;CL:0000540!9.40e-09!33;CL:0000047!9.40e-09!33;CL:0000031!9.40e-09!33;CL:0000404!9.40e-09!33;CL:0002453!1.38e-08!8;CL:0000548!1.40e-07!115;CL:0000004!1.40e-07!115;CL:0000255!1.40e-07!115;CL:0002371!6.00e-07!118;CL:0000128!9.26e-07!6;CL:0000126!9.26e-07!6;CL:0000127!9.26e-07!6 | |ontology_enrichment_celltype=CL:0000055!5.72e-18!50;CL:0000221!3.48e-16!44;CL:0000133!3.48e-16!44;CL:0002319!8.07e-16!43;CL:0002321!4.81e-12!70;CL:0000220!4.81e-12!70;CL:0000393!2.71e-11!39;CL:0000211!2.71e-11!39;CL:0000117!2.93e-10!23;CL:0000337!2.93e-10!23;CL:0000333!1.98e-09!10;CL:0000095!1.98e-09!10;CL:0000243!1.98e-09!10;CL:0000123!1.98e-09!10;CL:0000125!1.98e-09!10;CL:0000030!1.98e-09!10;CL:0000339!1.98e-09!10;CL:0000540!9.40e-09!33;CL:0000047!9.40e-09!33;CL:0000031!9.40e-09!33;CL:0000404!9.40e-09!33;CL:0002453!1.38e-08!8;CL:0000548!1.40e-07!115;CL:0000004!1.40e-07!115;CL:0000255!1.40e-07!115;CL:0002371!6.00e-07!118;CL:0000128!9.26e-07!6;CL:0000126!9.26e-07!6;CL:0000127!9.26e-07!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002453,1.42e-23,8;CL:0002319,3.37e-20,43;CL:0000221,1.22e-19,44;CL:0000133,1.22e-19,44;CL:0000333,1.42e-18,10;CL:0000095,1.42e-18,10;CL:0000243,1.42e-18,10;CL:0000123,1.42e-18,10;CL:0000125,1.42e-18,10;CL:0000030,1.42e-18,10;CL:0000339,1.42e-18,10;CL:0000128,7.31e-18,6;CL:0000126,7.31e-18,6;CL:0000127,7.31e-18,6;CL:0002321,1.68e-16,70;CL:0002194,1.81e-12,4;CL:0000766,1.81e-12,4;CL:0000234,1.81e-12,4;CL:0000576,1.81e-12,4;CL:0000235,1.81e-12,4;CL:0000864,1.81e-12,4;CL:0002009,1.81e-12,4;CL:0000040,1.81e-12,4;CL:0000559,1.81e-12,4;CL:0000117,1.94e-12,23;CL:0000337,1.94e-12,23;CL:0000393,1.14e-10,39;CL:0000211,1.14e-10,39;CL:0000723,5.18e-10,91;CL:0000048,5.18e-10,91;CL:0002614,2.78e-09,3;CL:0000034,4.24e-09,97;CL:0002092,4.62e-09,3;CL:0002540,4.62e-09,3;CL:0002494,4.68e-08,3;CL:0000737,4.68e-08,3;CL:0000746,4.68e-08,3;CL:0000513,4.68e-08,3;CL:0000540,5.10e-08,33;CL:0000047,5.10e-08,33;CL:0000031,5.10e-08,33;CL:0000404,5.10e-08,33;CL:0000219,1.09e-07,54;CL:0000878,2.63e-07,2;CL:0000129,2.63e-07,2;CL:0002605,3.44e-07,2;CL:0002604,3.44e-07,2;CL:0000473,4.16e-07,7;CL:0000557,4.16e-07,7;CL:0002603,5.14e-07,2;CL:0002476,8.68e-07,2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.27e-19!75;UBERON:0001016!2.27e-19!75;UBERON:0001017!2.58e-18!73;UBERON:0005743!2.58e-18!73;UBERON:0001049!2.86e-15!52;UBERON:0005068!2.86e-15!52;UBERON:0006241!2.86e-15!52;UBERON:0007135!2.86e-15!52;UBERON:0004121!4.69e-14!102;UBERON:0000924!4.69e-14!102;UBERON:0006601!4.69e-14!102;UBERON:0002020!1.13e-13!34;UBERON:0002616!3.52e-12!49;UBERON:0000955!1.14e-11!50;UBERON:0006238!1.14e-11!50;UBERON:0002346!1.85e-11!71;UBERON:0003075!1.85e-11!71;UBERON:0007284!1.85e-11!71;UBERON:0002791!2.43e-10!29;UBERON:0003528!2.43e-10!29;UBERON:0001893!2.43e-10!29;UBERON:0000033!1.32e-09!63;UBERON:0003080!1.16e-08!40;UBERON:0003076!1.38e-08!12;UBERON:0003057!1.38e-08!12;UBERON:0002780!2.52e-08!39;UBERON:0001890!2.52e-08!39;UBERON:0006240!2.52e-08!39;UBERON:0003056!1.36e-07!49;UBERON:0000025!3.70e-07!114;UBERON:0002619!4.67e-07!17;UBERON:0000956!6.38e-07!21;UBERON:0001869!6.38e-07!21;UBERON:0000203!6.38e-07!21 | |ontology_enrichment_uberon=UBERON:0000073!2.27e-19!75;UBERON:0001016!2.27e-19!75;UBERON:0001017!2.58e-18!73;UBERON:0005743!2.58e-18!73;UBERON:0001049!2.86e-15!52;UBERON:0005068!2.86e-15!52;UBERON:0006241!2.86e-15!52;UBERON:0007135!2.86e-15!52;UBERON:0004121!4.69e-14!102;UBERON:0000924!4.69e-14!102;UBERON:0006601!4.69e-14!102;UBERON:0002020!1.13e-13!34;UBERON:0002616!3.52e-12!49;UBERON:0000955!1.14e-11!50;UBERON:0006238!1.14e-11!50;UBERON:0002346!1.85e-11!71;UBERON:0003075!1.85e-11!71;UBERON:0007284!1.85e-11!71;UBERON:0002791!2.43e-10!29;UBERON:0003528!2.43e-10!29;UBERON:0001893!2.43e-10!29;UBERON:0000033!1.32e-09!63;UBERON:0003080!1.16e-08!40;UBERON:0003076!1.38e-08!12;UBERON:0003057!1.38e-08!12;UBERON:0002780!2.52e-08!39;UBERON:0001890!2.52e-08!39;UBERON:0006240!2.52e-08!39;UBERON:0003056!1.36e-07!49;UBERON:0000025!3.70e-07!114;UBERON:0002619!4.67e-07!17;UBERON:0000956!6.38e-07!21;UBERON:0001869!6.38e-07!21;UBERON:0000203!6.38e-07!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.97e-13,73;UBERON:0001016,2.90e-12,75;UBERON:0000073,5.65e-10,54;UBERON:0002020,1.20e-09,34;UBERON:0002038,2.78e-09,3;UBERON:0009663,2.78e-09,3;UBERON:0009661,2.78e-09,3;UBERON:0000125,2.78e-09,3;UBERON:0002308,2.78e-09,3;UBERON:0001049,4.18e-09,52;UBERON:0005068,4.18e-09,52;UBERON:0006241,4.18e-09,52;UBERON:0007135,4.18e-09,52;UBERON:0001948,5.45e-09,5;UBERON:0002315,5.45e-09,5;UBERON:0004121,1.04e-08,95;UBERON:0000924,1.04e-08,95;UBERON:0006601,1.04e-08,95;UBERON:0002371,4.03e-08,16;UBERON:0003076,5.72e-08,12;UBERON:0003057,5.72e-08,12;UBERON:0002240,1.70e-07,6;UBERON:0005174,1.70e-07,6;UBERON:0001137,1.70e-07,6;UBERON:0002950,4.73e-07,4;UBERON:0001891,4.73e-07,4;UBERON:0009616,4.73e-07,4;UBERON:0010286,4.73e-07,4;UBERON:0002204,6.13e-07,32;UBERON:0002346,8.35e-07,64;UBERON:0003075,8.35e-07,64;UBERON:0007284,8.35e-07,64 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0.183546752161682,2.34717403304412,13.9536100083486,6.81027166476863,10.4992145500113,2.79972843250725,5.75010257459886,0,0.725362142011344,0,1.54355661621568,1.14613375975503,1.03134418455488,1.01158230429799,0,0.633831403506179,1.0165335962074,0,1.7997994345628,5.93319817540185,2.1314403448383,11.3848041996994,13.4476406862544,0.414758449233911,2.43010688997043,0,2.28520787523043,2.20868540951614,0.367472397644862,0.479227355091182,2.75765635983006,0,0.766124028511126,1.68967186581868,0.659431438650969,0.640413505216868,0,3.90856198601933,4.50210088025344,1.98637722109853,1.76777151284201,1.85083185038834,0.372798891650601,0.908714319998209,0.302286240427142,0,0,0,0,0,0,0,0,0.259786004602869,0.35333957451034,0.281686839553361,1.28326477414318,0,0,0.432982082022428,0.253359865475099,0,0,0,0,0.173485326766136,0.304465478312141,0,0,0,0,0,0.144599356919912,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0.299581278809645,0.915001205637253,0.251308704225729,0,1.27857728665165,1.24672826735736,0.162241263067758,0,0,0.252722758433675,0,0,0,0.180062129805349,0,0.408218994907967,0,0.0937017245597288,0.258703370739016,0,0,0,0,0,0,0.411564272815887,0.398068533636986,0,0,0,0,0,0.180062061461015,0,0.787056926989615,0.154267112887378,0.232533944750408,0,0.116765342367169,0,0,0.162137619091711,0.146199987425332,0.219550115291051,0,0,0.205809224758569,0,0,0,0,0.128867461322093,0.201683524623343,0,0,0,0,0,0,0.38992817423824,0,0,0.199141273254367,0,0,1.1270773567308,0.203651327845314,0,0.140271639780637,0,0,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0.179397413521912,0,0.369506380333209,0,0,0,0.469380496577004,0,0,0,0,0,0,0,0.172684981865896,0,6.03165135757089,2.17562273527484,0,0,0.642202359951168,0.35163505977661,0,0,0,0,0.215423397732799,0.238968797952552,0.222798674082394,0,0,0.292255857911312,0.790575555893047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0,0,0,0,0.304464949114599,0.23467170806371,0,0,0,0.161464426695906,0,0,0.164140899745061,0,0.741701208042039,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0,0,0,0,0.954670618015114,0.158167996790568,0.406638934253697,0.216010681643603,0.209088296014469,0,0,0,0.26175594198403,0,0,0,0,0.330916980914195,0,0.516639293910924,0.337912250981556,0,0,0,0,0.288030006257865,0.316011120628178,0,0.102710957164827,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0.179427713218951,0.335769232728157,0,0,0,0,0,0.564751842617067,0.920650473014354,0.572895513439397,0,1.37016503954128,0.755393897389701,0,0.900642406448441,0.453142408984205,0.51776031175182,0.103787347584177,0.399024873401031,0,0.243106717068294,0,0,0,0,0,0,0,0,0,0.192075457214608,0,0,0,0,0.412085900803307,0,0,0.354951612318675,0,0.145346416632329,0,0,0,0,0,0,0.118635018124174,0.0985044823755635,0,0,0,0,0,0.214871054048298,0.191288332068843,0,0 | |phase1_expression=0,0,0,0,0,0.16787927191189,0,0.129123323441576,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0.183546752161682,2.34717403304412,13.9536100083486,6.81027166476863,10.4992145500113,2.79972843250725,5.75010257459886,0,0.725362142011344,0,1.54355661621568,1.14613375975503,1.03134418455488,1.01158230429799,0,0.633831403506179,1.0165335962074,0,1.7997994345628,5.93319817540185,2.1314403448383,11.3848041996994,13.4476406862544,0.414758449233911,2.43010688997043,0,2.28520787523043,2.20868540951614,0.367472397644862,0.479227355091182,2.75765635983006,0,0.766124028511126,1.68967186581868,0.659431438650969,0.640413505216868,0,3.90856198601933,4.50210088025344,1.98637722109853,1.76777151284201,1.85083185038834,0.372798891650601,0.908714319998209,0.302286240427142,0,0,0,0,0,0,0,0,0.259786004602869,0.35333957451034,0.281686839553361,1.28326477414318,0,0,0.432982082022428,0.253359865475099,0,0,0,0,0.173485326766136,0.304465478312141,0,0,0,0,0,0.144599356919912,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0.299581278809645,0.915001205637253,0.251308704225729,0,1.27857728665165,1.24672826735736,0.162241263067758,0,0,0.252722758433675,0,0,0,0.180062129805349,0,0.408218994907967,0,0.0937017245597288,0.258703370739016,0,0,0,0,0,0,0.411564272815887,0.398068533636986,0,0,0,0,0,0.180062061461015,0,0.787056926989615,0.154267112887378,0.232533944750408,0,0.116765342367169,0,0,0.162137619091711,0.146199987425332,0.219550115291051,0,0,0.205809224758569,0,0,0,0,0.128867461322093,0.201683524623343,0,0,0,0,0,0,0.38992817423824,0,0,0.199141273254367,0,0,1.1270773567308,0.203651327845314,0,0.140271639780637,0,0,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0.179397413521912,0,0.369506380333209,0,0,0,0.469380496577004,0,0,0,0,0,0,0,0.172684981865896,0,6.03165135757089,2.17562273527484,0,0,0.642202359951168,0.35163505977661,0,0,0,0,0.215423397732799,0.238968797952552,0.222798674082394,0,0,0.292255857911312,0.790575555893047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0,0,0,0,0.304464949114599,0.23467170806371,0,0,0,0.161464426695906,0,0,0.164140899745061,0,0.741701208042039,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0,0,0,0,0.954670618015114,0.158167996790568,0.406638934253697,0.216010681643603,0.209088296014469,0,0,0,0.26175594198403,0,0,0,0,0.330916980914195,0,0.516639293910924,0.337912250981556,0,0,0,0,0.288030006257865,0.316011120628178,0,0.102710957164827,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0,0.179427713218951,0.335769232728157,0,0,0,0,0,0.564751842617067,0.920650473014354,0.572895513439397,0,1.37016503954128,0.755393897389701,0,0.900642406448441,0.453142408984205,0.51776031175182,0.103787347584177,0.399024873401031,0,0.243106717068294,0,0,0,0,0,0,0,0,0,0.192075457214608,0,0,0,0,0.412085900803307,0,0,0.354951612318675,0,0.145346416632329,0,0,0,0,0,0,0.118635018124174,0.0985044823755635,0,0,0,0,0,0.214871054048298,0.191288332068843,0,0 | ||
|short_description=p@chr1:174128019..174128042,- | |short_description=p@chr1:174128019..174128042,- | ||
}} | }} |
Latest revision as of 07:13, 5 August 2015
Short description: | p@chr1:174128019..174128042, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:174128019..174128042, - |
Coexpression cluster: | MCL_coexpression_mm9:176 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.97e-13 | 73 |
nervous system | 2.90e-12 | 75 |
regional part of nervous system | 5.65e-10 | 54 |
gray matter | 1.20e-09 | 34 |
substantia nigra | 2.78e-09 | 3 |
telencephalic nucleus | 2.78e-09 | 3 |
midbrain nucleus | 2.78e-09 | 3 |
neural nucleus | 2.78e-09 | 3 |
nucleus of brain | 2.78e-09 | 3 |
neural tube | 4.18e-09 | 52 |
neural rod | 4.18e-09 | 52 |
future spinal cord | 4.18e-09 | 52 |
neural keel | 4.18e-09 | 52 |
regional part of spinal cord | 5.45e-09 | 5 |
gray matter of spinal cord | 5.45e-09 | 5 |
ectoderm-derived structure | 1.04e-08 | 95 |
ectoderm | 1.04e-08 | 95 |
presumptive ectoderm | 1.04e-08 | 95 |
bone marrow | 4.03e-08 | 16 |
posterior neural tube | 5.72e-08 | 12 |
chordal neural plate | 5.72e-08 | 12 |
spinal cord | 1.70e-07 | 6 |
dorsal region element | 1.70e-07 | 6 |
dorsum | 1.70e-07 | 6 |
regional part of midbrain | 4.73e-07 | 4 |
midbrain | 4.73e-07 | 4 |
presumptive midbrain | 4.73e-07 | 4 |
midbrain neural tube | 4.73e-07 | 4 |
musculoskeletal system | 6.13e-07 | 32 |
neurectoderm | 8.35e-07 | 64 |
neural plate | 8.35e-07 | 64 |
presumptive neural plate | 8.35e-07 | 64 |