FFCP PHASE1:Hg19::chr10:112064630..112064650,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10285 | |EntrezGene=10285 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16900 | |HGNC=16900 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=13bp_to_ENST00000460483_5end | |association_with_transcript=13bp_to_ENST00000460483_5end | ||
|cluster_id=chr10:112064630..112064650,- | |||
|description=CAGE_peak_2_at_SMNDC1_5end | |description=CAGE_peak_2_at_SMNDC1_5end | ||
|id=chr10:112064630..112064650,- | |id=chr10:112064630..112064650,- | ||
|ontology_enrichment_celltype=CL:0000037!1.48e-36!172;CL:0000566!1.48e-36!172;CL:0002032!9.94e-35!165;CL:0000837!9.94e-35!165;CL:0000988!4.53e-33!182;CL:0000738!5.26e-31!140;CL:0000763!3.38e-29!112;CL:0000049!3.38e-29!112;CL:0002087!1.96e-25!119;CL:0002057!4.16e-25!42;CL:0000860!2.49e-24!45;CL:0000766!1.31e-22!76;CL:0002031!2.18e-22!124;CL:0002009!3.41e-21!65;CL:0002194!4.52e-20!63;CL:0000576!4.52e-20!63;CL:0000040!4.52e-20!63;CL:0000559!4.52e-20!63;CL:0000557!3.29e-19!71;CL:0000839!4.53e-17!70;CL:0000219!3.57e-11!390;CL:0000063!3.60e-11!578;CL:0000134!9.65e-11!358;CL:0002320!2.96e-09!365;CL:0000003!6.23e-07!722 | |ontology_enrichment_celltype=CL:0000037!1.48e-36!172;CL:0000566!1.48e-36!172;CL:0002032!9.94e-35!165;CL:0000837!9.94e-35!165;CL:0000988!4.53e-33!182;CL:0000738!5.26e-31!140;CL:0000763!3.38e-29!112;CL:0000049!3.38e-29!112;CL:0002087!1.96e-25!119;CL:0002057!4.16e-25!42;CL:0000860!2.49e-24!45;CL:0000766!1.31e-22!76;CL:0002031!2.18e-22!124;CL:0002009!3.41e-21!65;CL:0002194!4.52e-20!63;CL:0000576!4.52e-20!63;CL:0000040!4.52e-20!63;CL:0000559!4.52e-20!63;CL:0000557!3.29e-19!71;CL:0000839!4.53e-17!70;CL:0000219!3.57e-11!390;CL:0000063!3.60e-11!578;CL:0000134!9.65e-11!358;CL:0002320!2.96e-09!365;CL:0000003!6.23e-07!722 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.51e-19;33!CL:0002057;1.51e-19;33!CL:0000576;3.05e-16;48!CL:0000473;2.37e-13;39!CL:0000234;2.37e-13;39!CL:0000766;4.79e-11;69!CL:0000763;7.52e-10;100!CL:0002087;1.53e-08;104!CL:0000738;5.40e-08;136!CL:0000988;5.47e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.51e-36,168;CL:0002032,9.93e-35,161;CL:0000837,9.93e-35,161;CL:0000988,2.58e-33,177;CL:0000738,4.59e-31,136;CL:0000763,2.34e-29,108;CL:0000049,2.34e-29,108;CL:0002087,1.66e-25,115;CL:0000860,4.07e-25,42;CL:0002057,4.07e-25,42;CL:0000766,6.61e-23,72;CL:0002031,2.15e-22,120;CL:0002009,1.42e-21,61;CL:0000473,2.34e-21,48;CL:0000234,2.34e-21,48;CL:0002194,1.96e-20,59;CL:0000576,1.96e-20,59;CL:0000040,1.96e-20,59;CL:0000559,1.96e-20,59;CL:0000557,1.91e-19,67;CL:0000839,3.02e-17,66;CL:0000219,4.01e-11,386;CL:0000134,1.04e-10,354;CL:0002320,3.15e-09,361 | |||
|ontology_enrichment_development_v019=CL:0002057;6.01e-19;42!CL:0000049;7.93e-09;108 | |||
|ontology_enrichment_disease=DOID:2531!1.60e-10!51;DOID:0060083!1.60e-10!51;DOID:1240!2.34e-08!39;DOID:8692!2.32e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.97e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.59e-10,51;DOID:0060083,1.59e-10,51;DOID:1240,2.32e-08,39;DOID:8692,2.31e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0002193!1.62e-19!112;UBERON:0002390!5.24e-19!102;UBERON:0003061!5.24e-19!102;UBERON:0002371!4.17e-17!80;UBERON:0001474!8.71e-17!86;UBERON:0004765!1.33e-13!101;UBERON:0001434!1.33e-13!101;UBERON:0002405!1.32e-12!115;UBERON:0002384!1.82e-08!375 | |ontology_enrichment_uberon=UBERON:0002193!1.62e-19!112;UBERON:0002390!5.24e-19!102;UBERON:0003061!5.24e-19!102;UBERON:0002371!4.17e-17!80;UBERON:0001474!8.71e-17!86;UBERON:0004765!1.33e-13!101;UBERON:0001434!1.33e-13!101;UBERON:0002405!1.32e-12!115;UBERON:0002384!1.82e-08!375 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.64e-19,108;UBERON:0002390,4.95e-19,98;UBERON:0003061,4.95e-19,98;UBERON:0002371,3.31e-17,76;UBERON:0002405,3.43e-17,93;UBERON:0001474,7.64e-17,82;UBERON:0004765,1.67e-14,90;UBERON:0001434,3.35e-12,100;UBERON:0002384,2.04e-08,371 | |||
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| ||
|short_description=p2@SMNDC1 | |short_description=p2@SMNDC1 | ||
}} | }} |
Latest revision as of 08:16, 16 September 2015
Short description: | p2@SMNDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMNDC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_ENST00000460483_5end |
EntrezGene: | SMNDC1 |
HGNC: | 16900 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.51e-36 | 168 |
hematopoietic oligopotent progenitor cell | 9.93e-35 | 161 |
hematopoietic multipotent progenitor cell | 9.93e-35 | 161 |
hematopoietic cell | 2.58e-33 | 177 |
leukocyte | 4.59e-31 | 136 |
myeloid cell | 2.34e-29 | 108 |
common myeloid progenitor | 2.34e-29 | 108 |
nongranular leukocyte | 1.66e-25 | 115 |
classical monocyte | 4.07e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.07e-25 | 42 |
myeloid leukocyte | 6.61e-23 | 72 |
hematopoietic lineage restricted progenitor cell | 2.15e-22 | 120 |
macrophage dendritic cell progenitor | 1.42e-21 | 61 |
defensive cell | 2.34e-21 | 48 |
phagocyte | 2.34e-21 | 48 |
monopoietic cell | 1.96e-20 | 59 |
monocyte | 1.96e-20 | 59 |
monoblast | 1.96e-20 | 59 |
promonocyte | 1.96e-20 | 59 |
granulocyte monocyte progenitor cell | 1.91e-19 | 67 |
myeloid lineage restricted progenitor cell | 3.02e-17 | 66 |
motile cell | 4.01e-11 | 386 |
mesenchymal cell | 1.04e-10 | 354 |
connective tissue cell | 3.15e-09 | 361 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.64e-19 | 108 |
hematopoietic system | 4.95e-19 | 98 |
blood island | 4.95e-19 | 98 |
bone marrow | 3.31e-17 | 76 |
immune system | 3.43e-17 | 93 |
bone element | 7.64e-17 | 82 |
skeletal element | 1.67e-14 | 90 |
skeletal system | 3.35e-12 | 100 |
connective tissue | 2.04e-08 | 371 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.59e-10 | 51 |
immune system cancer | 1.59e-10 | 51 |
leukemia | 2.32e-08 | 39 |
myeloid leukemia | 2.31e-07 | 31 |