FFCP PHASE1:Hg19::chr10:50818288..50818298,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6572 | |EntrezGene=6572 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10936 | |HGNC=10936 | ||
|TSSclassifier=strong | |||
|UniProt=Q16572 | |UniProt=Q16572 | ||
|association_with_transcript=-48bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end | |association_with_transcript=-48bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end | ||
|cluster_id=chr10:50818288..50818298,+ | |||
|coexpression_cluster_id=C1313 | |||
|description=CAGE_peak_5_at_SLC18A3_5end | |description=CAGE_peak_5_at_SLC18A3_5end | ||
|id=chr10:50818288..50818298,+ | |id=chr10:50818288..50818298,+ | ||
|ontology_enrichment_celltype=CL:0002536!1.95e-10!2;CL:0002537!7.44e-10!5;CL:0000349!6.31e-08!3;CL:0002577!6.31e-08!3 | |ontology_enrichment_celltype=CL:0002536!1.95e-10!2;CL:0002537!7.44e-10!5;CL:0000349!6.31e-08!3;CL:0002577!6.31e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0002537;5.97e-33;5!CL:0002577;3.81e-25;3!CL:0000349;7.83e-24;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,6.67e-33,5;CL:0002577,2.64e-25,3;CL:0000349,7.13e-24,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!2.15e-23!10;DOID:169!3.38e-13!6;DOID:3095!4.08e-10!22;DOID:2994!4.08e-10!22 | |ontology_enrichment_disease=DOID:171!2.15e-23!10;DOID:169!3.38e-13!6;DOID:3095!4.08e-10!22;DOID:2994!4.08e-10!22 | ||
|ontology_enrichment_disease_v019=DOID:171;7.69e-17;10!DOID:3095;5.39e-08;22!DOID:2994;5.39e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,7.29e-17,10;DOID:3095,5.26e-08,22;DOID:2994,5.26e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0005631!4.20e-27!14;UBERON:0000158!4.20e-27!14;UBERON:0000305!1.21e-17!7;UBERON:0000013!8.25e-16!5;UBERON:0002410!8.25e-16!5;UBERON:0004871!2.08e-15!8;UBERON:0000478!3.85e-15!24;UBERON:0000988!7.60e-15!3;UBERON:0000924!1.42e-12!173;UBERON:0006601!1.42e-12!173;UBERON:0001987!8.24e-12!4;UBERON:0004340!8.24e-12!4;UBERON:0003124!1.76e-11!7;UBERON:0003076!6.19e-11!15;UBERON:0003057!6.19e-11!15;UBERON:0002148!8.96e-11!2;UBERON:0009662!8.96e-11!2;UBERON:0001875!1.61e-10!2;UBERON:0006514!1.61e-10!2;UBERON:0002346!7.90e-10!90;UBERON:0002298!9.25e-10!8;UBERON:0004121!1.89e-09!169;UBERON:0000073!5.88e-09!94;UBERON:0001016!5.88e-09!94;UBERON:0000010!7.92e-09!8;UBERON:0002308!9.34e-09!9;UBERON:0000125!9.34e-09!9;UBERON:0001049!9.87e-08!57;UBERON:0005068!9.87e-08!57;UBERON:0006241!9.87e-08!57;UBERON:0007135!9.87e-08!57;UBERON:0006331!1.87e-07!3;UBERON:0002240!2.66e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000305;9.03e-24;7!UBERON:0001987;3.91e-19;4!UBERON:0002346;5.15e-19;4!UBERON:0000923;5.15e-19;4!UBERON:0010316;5.15e-19;4!UBERON:0005291;5.15e-19;4!UBERON:0000478;6.54e-19;24!UBERON:0005631;7.28e-17;10!UBERON:0000158;7.28e-17;10!UBERON:0002050;2.02e-15;5!UBERON:0005423;2.02e-15;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.63e-32,14;UBERON:0000158,2.63e-32,14;UBERON:0000305,9.77e-24,7;UBERON:0004871,7.25e-21,8;UBERON:0001987,2.98e-19,4;UBERON:0004340,2.98e-19,4;UBERON:0000478,6.07e-19,24;UBERON:0003124,1.97e-11,7;UBERON:0004923,6.25e-07,66 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,1.41849132023278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,1.03473071292505,0,0,0,0,0,0,0,0,1.81876542867756,0,12.0956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,1.18785872333055,3.07160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.496771223531068,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,4.86197196080051,0,0,0,0,0,0,0.675769762612291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27894371303652,0.431299245586727,0.314531883711793,0.218419276384028,0,2.76347396132188,1.48722917110803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0,0,0,0,0.863710364874486,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329821550236287,0,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,1.41849132023278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,1.03473071292505,0,0,0,0,0,0,0,0,1.81876542867756,0,12.0956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,1.18785872333055,3.07160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.496771223531068,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,4.86197196080051,0,0,0,0,0,0,0.675769762612291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27894371303652,0.431299245586727,0.314531883711793,0.218419276384028,0,2.76347396132188,1.48722917110803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0,0,0,0,0.863710364874486,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329821550236287,0,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p5@SLC18A3 | |short_description=p5@SLC18A3 | ||
}} | }} |
Latest revision as of 10:09, 18 September 2015
Short description: | p5@SLC18A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SLC18A3_5end |
Coexpression cluster: | C1313_Placental_mesothelioma_amniotic_neuroectodermal_renal_chorionic_carcinosarcoma |
Association with transcript: | -48bp_to_ENST00000374115, NM_003055, uc001jhw.2_5end |
EntrezGene: | SLC18A3 |
HGNC: | 10936 |
UniProt: | Q16572 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 6.67e-33 | 5 |
placental epithelial cell | 2.64e-25 | 3 |
extraembryonic cell | 7.13e-24 | 19 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.63e-32 | 14 |
membranous layer | 2.63e-32 | 14 |
amnion | 9.77e-24 | 7 |
somatic layer of lateral plate mesoderm | 7.25e-21 | 8 |
placenta | 2.98e-19 | 4 |
allantois | 2.98e-19 | 4 |
extraembryonic structure | 6.07e-19 | 24 |
chorion | 1.97e-11 | 7 |
organ component layer | 6.25e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 7.29e-17 | 10 |
germ cell and embryonal cancer | 5.26e-08 | 22 |
germ cell cancer | 5.26e-08 | 22 |