FFCP PHASE1:Hg19::chr10:71930222..71930280,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56681 | |EntrezGene=56681 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10534 | |HGNC=10534 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NR31,E9PBN0,B4DQ19 | |UniProt=Q9NR31,E9PBN0,B4DQ19 | ||
|association_with_transcript=0bp_to_ENST00000373239,ENST00000373241,ENST00000373242,ENST00000395026,ENST00000458634_5end | |association_with_transcript=0bp_to_ENST00000373239,ENST00000373241,ENST00000373242,ENST00000395026,ENST00000458634_5end | ||
|cluster_id=chr10:71930222..71930280,- | |||
|description=CAGE_peak_1_at_SAR1A_5end | |description=CAGE_peak_1_at_SAR1A_5end | ||
|id=chr10:71930222..71930280,- | |id=chr10:71930222..71930280,- | ||
|ontology_enrichment_celltype=CL:0000055!1.09e-22!180;CL:0000048!6.80e-19!430;CL:0000723!4.30e-18!436;CL:0000057!6.23e-18!75;CL:0000034!1.27e-16!444;CL:0000680!4.15e-12!57;CL:0000056!4.15e-12!57;CL:0000355!4.15e-12!57;CL:0000187!2.24e-11!54;CL:0000393!1.02e-09!60;CL:0000211!1.02e-09!60;CL:0000144!1.64e-09!625;CL:0000136!2.05e-09!15;CL:0002371!3.09e-09!591;CL:0000134!3.46e-09!358;CL:0000192!8.22e-09!42;CL:0000514!8.22e-09!42;CL:0002320!8.41e-09!365;CL:0000183!3.08e-08!59;CL:0002620!3.30e-08!23;CL:0000359!3.59e-08!32;CL:0000548!1.21e-07!679;CL:0000004!1.21e-07!679;CL:0000255!1.21e-07!679;CL:0000012!4.34e-07!682;CL:0000499!4.83e-07!27 | |ontology_enrichment_celltype=CL:0000055!1.09e-22!180;CL:0000048!6.80e-19!430;CL:0000723!4.30e-18!436;CL:0000057!6.23e-18!75;CL:0000034!1.27e-16!444;CL:0000680!4.15e-12!57;CL:0000056!4.15e-12!57;CL:0000355!4.15e-12!57;CL:0000187!2.24e-11!54;CL:0000393!1.02e-09!60;CL:0000211!1.02e-09!60;CL:0000144!1.64e-09!625;CL:0000136!2.05e-09!15;CL:0002371!3.09e-09!591;CL:0000134!3.46e-09!358;CL:0000192!8.22e-09!42;CL:0000514!8.22e-09!42;CL:0002320!8.41e-09!365;CL:0000183!3.08e-08!59;CL:0002620!3.30e-08!23;CL:0000359!3.59e-08!32;CL:0000548!1.21e-07!679;CL:0000004!1.21e-07!679;CL:0000255!1.21e-07!679;CL:0000012!4.34e-07!682;CL:0000499!4.83e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000136;4.26e-09;13!CL:0002620;3.34e-08;23!CL:0000057;7.47e-08;73!CL:0000359;1.12e-07;32!CL:0000860;1.56e-07;33!CL:0002057;1.56e-07;33!CL:0000499;1.73e-07;28!CL:0000187;7.38e-07;55!CL:0000192;8.32e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,6.78e-19,427;CL:0000057,2.06e-18,76;CL:0000723,4.31e-18,433;CL:0000034,1.29e-16,441;CL:0000680,3.00e-12,58;CL:0000056,3.00e-12,58;CL:0000355,3.00e-12,58;CL:0000187,1.62e-11,55;CL:0000393,7.31e-10,61;CL:0000211,7.31e-10,61;CL:0000136,2.05e-09,15;CL:0000134,4.44e-09,354;CL:0000192,5.99e-09,43;CL:0000514,5.99e-09,43;CL:0002320,1.08e-08,361;CL:0002620,3.30e-08,23;CL:0000359,3.59e-08,32;CL:0000499,1.72e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000514;8.32e-07;43!CL:0000355;9.78e-07;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.38e-16!83;UBERON:0002329!2.38e-16!83;UBERON:0003077!2.38e-16!83;UBERON:0003059!2.38e-16!83;UBERON:0007282!2.38e-16!83;UBERON:0009618!2.38e-16!83;UBERON:0007285!2.38e-16!83;UBERON:0004290!1.63e-13!70;UBERON:0000486!6.76e-12!82;UBERON:0003102!1.22e-11!95;UBERON:0001134!1.68e-11!61;UBERON:0002036!1.68e-11!61;UBERON:0003082!1.68e-11!61;UBERON:0002204!3.86e-11!167;UBERON:0002385!7.07e-11!63;UBERON:0001015!7.07e-11!63;UBERON:0000383!7.07e-11!63;UBERON:0005256!8.77e-10!143;UBERON:0000926!7.90e-09!448;UBERON:0004120!7.90e-09!448;UBERON:0006603!7.90e-09!448;UBERON:0002384!1.51e-08!375;UBERON:0002199!6.87e-08!45;UBERON:0002416!6.87e-08!45;UBERON:0000468!8.75e-08!659 | |ontology_enrichment_uberon=UBERON:0000914!2.38e-16!83;UBERON:0002329!2.38e-16!83;UBERON:0003077!2.38e-16!83;UBERON:0003059!2.38e-16!83;UBERON:0007282!2.38e-16!83;UBERON:0009618!2.38e-16!83;UBERON:0007285!2.38e-16!83;UBERON:0004290!1.63e-13!70;UBERON:0000486!6.76e-12!82;UBERON:0003102!1.22e-11!95;UBERON:0001134!1.68e-11!61;UBERON:0002036!1.68e-11!61;UBERON:0003082!1.68e-11!61;UBERON:0002204!3.86e-11!167;UBERON:0002385!7.07e-11!63;UBERON:0001015!7.07e-11!63;UBERON:0000383!7.07e-11!63;UBERON:0005256!8.77e-10!143;UBERON:0000926!7.90e-09!448;UBERON:0004120!7.90e-09!448;UBERON:0006603!7.90e-09!448;UBERON:0002384!1.51e-08!375;UBERON:0002199!6.87e-08!45;UBERON:0002416!6.87e-08!45;UBERON:0000468!8.75e-08!659 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,7.73e-14,73;UBERON:0002329,1.17e-13,71;UBERON:0003059,1.17e-13,71;UBERON:0007282,1.17e-13,71;UBERON:0004290,1.17e-13,71;UBERON:0009618,1.17e-13,71;UBERON:0003077,1.97e-13,72;UBERON:0007285,1.97e-13,72;UBERON:0003102,1.04e-12,99;UBERON:0000486,4.80e-12,83;UBERON:0000926,1.12e-11,315;UBERON:0004120,1.12e-11,315;UBERON:0006603,1.12e-11,315;UBERON:0001134,1.21e-11,62;UBERON:0002036,1.21e-11,62;UBERON:0003082,1.21e-11,62;UBERON:0002385,5.07e-11,64;UBERON:0001015,5.07e-11,64;UBERON:0000383,5.07e-11,64;UBERON:0002204,9.39e-11,167;UBERON:0007503,4.45e-10,78;UBERON:0005256,6.97e-10,122;UBERON:0002384,1.94e-08,371;UBERON:0002199,2.41e-08,46;UBERON:0002416,2.41e-08,46;UBERON:0000490,1.93e-07,148;UBERON:0004923,3.15e-07,66;UBERON:0003104,4.09e-07,160;UBERON:0009142,4.09e-07,160 | |||
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| ||
|short_description=p1@SAR1A | |short_description=p1@SAR1A | ||
}} | }} |
Latest revision as of 01:46, 19 September 2015
Short description: | p1@SAR1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SAR1A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000373239, ENST00000373241, ENST00000373242, ENST00000395026, ENST00000458634_5end |
EntrezGene: | SAR1A |
HGNC: | 10534 |
UniProt: | Q9NR31E9PBN0B4DQ19 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 6.78e-19 | 427 |
fibroblast | 2.06e-18 | 76 |
somatic stem cell | 4.31e-18 | 433 |
stem cell | 1.29e-16 | 441 |
muscle precursor cell | 3.00e-12 | 58 |
myoblast | 3.00e-12 | 58 |
multi-potent skeletal muscle stem cell | 3.00e-12 | 58 |
muscle cell | 1.62e-11 | 55 |
electrically responsive cell | 7.31e-10 | 61 |
electrically active cell | 7.31e-10 | 61 |
fat cell | 2.05e-09 | 15 |
mesenchymal cell | 4.44e-09 | 354 |
smooth muscle cell | 5.99e-09 | 43 |
smooth muscle myoblast | 5.99e-09 | 43 |
connective tissue cell | 1.08e-08 | 361 |
skin fibroblast | 3.30e-08 | 23 |
vascular associated smooth muscle cell | 3.59e-08 | 32 |
stromal cell | 1.72e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 7.73e-14 | 73 |
somite | 1.17e-13 | 71 |
presomitic mesoderm | 1.17e-13 | 71 |
presumptive segmental plate | 1.17e-13 | 71 |
dermomyotome | 1.17e-13 | 71 |
trunk paraxial mesoderm | 1.17e-13 | 71 |
paraxial mesoderm | 1.97e-13 | 72 |
presumptive paraxial mesoderm | 1.97e-13 | 72 |
surface structure | 1.04e-12 | 99 |
multilaminar epithelium | 4.80e-12 | 83 |
mesoderm | 1.12e-11 | 315 |
mesoderm-derived structure | 1.12e-11 | 315 |
presumptive mesoderm | 1.12e-11 | 315 |
skeletal muscle tissue | 1.21e-11 | 62 |
striated muscle tissue | 1.21e-11 | 62 |
myotome | 1.21e-11 | 62 |
muscle tissue | 5.07e-11 | 64 |
musculature | 5.07e-11 | 64 |
musculature of body | 5.07e-11 | 64 |
musculoskeletal system | 9.39e-11 | 167 |
epithelial vesicle | 4.45e-10 | 78 |
trunk mesenchyme | 6.97e-10 | 122 |
connective tissue | 1.94e-08 | 371 |
integument | 2.41e-08 | 46 |
integumental system | 2.41e-08 | 46 |
unilaminar epithelium | 1.93e-07 | 148 |
organ component layer | 3.15e-07 | 66 |
mesenchyme | 4.09e-07 | 160 |
entire embryonic mesenchyme | 4.09e-07 | 160 |