FFCP PHASE1:Hg19::chr17:47074793..47074870,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10642 | |EntrezGene=10642 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28866 | |HGNC=28866 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000510023_5end | |association_with_transcript=0bp_to_ENST00000510023_5end | ||
|cluster_id=chr17:47074793..47074870,+ | |||
|coexpression_cluster_id=C2417 | |||
|description=CAGE_peak_1_at_IGF2BP1_5end | |description=CAGE_peak_1_at_IGF2BP1_5end | ||
|id=chr17:47074793..47074870,+ | |id=chr17:47074793..47074870,+ | ||
|ontology_enrichment_celltype=CL:0000055!9.97e-20!180;CL:0000548!2.38e-12!679;CL:0000004!2.38e-12!679;CL:0000255!2.38e-12!679;CL:0000012!1.09e-11!682;CL:0002321!1.38e-11!248;CL:0000220!6.69e-11!246;CL:0000183!1.36e-09!59;CL:0000222!2.05e-09!119;CL:0000393!3.52e-09!60;CL:0000211!3.52e-09!60;CL:0000144!3.66e-08!625;CL:0000187!6.74e-08!54;CL:0000680!9.71e-08!57;CL:0000056!9.71e-08!57;CL:0000355!9.71e-08!57;CL:0000133!9.37e-07!59 | |ontology_enrichment_celltype=CL:0000055!9.97e-20!180;CL:0000548!2.38e-12!679;CL:0000004!2.38e-12!679;CL:0000255!2.38e-12!679;CL:0000012!1.09e-11!682;CL:0002321!1.38e-11!248;CL:0000220!6.69e-11!246;CL:0000183!1.36e-09!59;CL:0000222!2.05e-09!119;CL:0000393!3.52e-09!60;CL:0000211!3.52e-09!60;CL:0000144!3.66e-08!625;CL:0000187!6.74e-08!54;CL:0000680!9.71e-08!57;CL:0000056!9.71e-08!57;CL:0000355!9.71e-08!57;CL:0000133!9.37e-07!59 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.36e-10,250;CL:0000393,4.09e-09,61;CL:0000211,4.09e-09,61;CL:0000222,1.57e-08,121;CL:0000187,8.85e-08,55;CL:0000680,1.96e-07,58;CL:0000056,1.96e-07,58;CL:0000355,1.96e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!7.86e-12!22;DOID:2994!7.86e-12!22;DOID:0050687!2.61e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:3095;4.10e-12;22!DOID:2994;4.10e-12;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.03e-12,22;DOID:2994,4.03e-12,22;DOID:0050687,2.20e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0005256!3.46e-08!143;UBERON:0003914!3.72e-08!118;UBERON:0002049!7.91e-08!79;UBERON:0007798!7.91e-08!79;UBERON:0004290!9.50e-08!70;UBERON:0003104!2.19e-07!238;UBERON:0009142!2.19e-07!238;UBERON:0000490!3.59e-07!138;UBERON:0000914!4.14e-07!83;UBERON:0002329!4.14e-07!83;UBERON:0003077!4.14e-07!83;UBERON:0003059!4.14e-07!83;UBERON:0007282!4.14e-07!83;UBERON:0009618!4.14e-07!83;UBERON:0007285!4.14e-07!83;UBERON:0001134!4.34e-07!61;UBERON:0002036!4.34e-07!61;UBERON:0003082!4.34e-07!61 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,3.45e-10,160;UBERON:0009142,3.45e-10,160;UBERON:0007503,2.59e-09,78;UBERON:0000490,2.95e-07,148;UBERON:0002329,3.80e-07,71;UBERON:0003059,3.80e-07,71;UBERON:0007282,3.80e-07,71;UBERON:0004290,3.80e-07,71;UBERON:0009618,3.80e-07,71;UBERON:0002049,4.05e-07,78;UBERON:0007798,4.05e-07,78;UBERON:0007524,5.25e-07,73;UBERON:0005256,5.97e-07,122;UBERON:0003914,6.57e-07,117;UBERON:0003077,7.95e-07,72;UBERON:0007285,7.95e-07,72 | |||
|phase1_expression=0.908391896352783,1.71280419112787,1.9733616573436,7.00513088471913,2.23480547213644,0,17.7309914717817,1.26343974685366,0,47.1809158082897,94.2031576762777,61.8189083128388,51.17079377632,9.2824764720035,14.5814845320283,22.8590549793604,23.5050865929351,25.5608531635581,20.0052447504108,37.5519227134203,40.1881361751178,25.3898324397251,11.4494394852423,16.0143077335275,18.9569385788152,22.00706085541,19.2936385207373,23.2983912688491,0,0,2.32224184974114,0,0,0,8.75379366557408,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0.224723484445085,0,0,0.639337125799041,0,0,0,0,0,0.622822248995575,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.1089232119982,10.356867509326,1.80719576192283,6.01605492763067,0.869079113764942,5.5670016293577,4.86634870302636,26.9424228917593,32.5942214269969,32.4110359207635,1.37528029272598,0,0,0,0,0,0,0,0,4.77029777680092,1.72046919021225,1.04142150482278,0.56530794192401,0,18.7080268519246,22.7804513525124,11.3703374034505,11.028754143288,12.0499420595281,0.402829317109147,0,2.92874469057803,0.735326160691737,2.43042584364528,34.737594302507,44.6813451526078,43.1301970251124,56.7271558623768,46.5140173188383,35.7243400664294,0,0,1.74437620857014,21.3697939228987,6.20489507156441,7.54732330635347,11.1866282092037,4.25602058638028,26.3518472066884,39.4971284199908,22.6934144543787,19.2950841947855,26.9421344139376,28.9327568510822,25.7307626996383,24.19938882816,42.4121791619172,4.99456122928513,3.99330275081114,3.13842229158782,20.3161682653713,27.8421464313186,26.4047516600227,2.65400422631361,22.4786800680535,1.13658359293342,0,2.22540236350701,1.82032272387605,2.87447256726495,10.9418474070143,25.1488224942648,1.38532057742091,3.07284334616587,0.30648779579902,3.00476117813194,15.993937825563,23.8588215466186,6.19316427573846,8.68920794754204,28.5086541280182,13.8090389179508,27.3098972448367,10.422543954569,36.793240428596,18.8053419961113,29.2823178123173,9.66523935744143,2.90962902273861,36.9209976217279,16.523344109333,11.6996808694236,0,0,0,98.7987019649723,112.120183999977,106.898427439957,103.868377125401,103.956190560759,113.142981313507,1.56449532329816,1.28648187638577,2.76269842704961,13.0023019848954,8.66255378003503,21.4135308072117,21.2416709498408,22.6550368090473,24.1543800283943,25.0561360706267,16.8462139568879,18.4718892179425,17.8561533264065,21.1610936320515,41.3367054589803,67.316051425654,15.6398124305932,44.1026134156626,0,0,0,0,80.4344388071963,23.504790010898,0,0,0,18.702865922023,42.6808879956525,3.11980435583874,23.0930147240437,22.60642897014,36.1618778246331,1.73239737313289,1.85194205030644,1.33177906564219,0,0,0,0,0,0,0.16798212819886,0,0,0,0.383382679165211,0,0,0,0,0,0,0,2.34434894420094,8.55362230113526,0.616964956219941,1.20137223137567,0.285826432630578,56.1776732570257,60.1624894989927,28.5285931843496,21.9761916788222,0,1.690605505112,5.31876233169741,4.16029747645464,30.0932627886706,19.858878483259,46.6238813278174,4.28933980974443,50.4638093014042,48.5711798700654,1.30294473717494,3.909311436168,32.4700267902706,0.602878754119172,0.871533458600294,0.299918973546171,0,0,0,15.5756156069529,17.2292903751171,7.13184525203592,4.05387658669222,5.34238438630997,0.179060963239896,0,0,0,0,7.6228387266739,3.90419561572865,1.54657762555539,4.85797169469611,5.74144876487847,0,0,0,10.551468287846,12.0040925054323,18.446021611582,0.207970861530807,0.356857977594324,0.788512075169673,0,18.3577120833909,6.82222512167955,10.3473071292505,25.2405727443466,20.2806085395873,5.82120216936155,34.6568048709051,54.5598043859261,0,0,0,25.4627160014858,18.3078983461547,34.1701031462539,0,2.76231551918512,2.24528075546459,1.92208723883551,6.65219423786715,5.14732547659544,0,18.1967438687134,3.01854933032316,11.9084376220023,15.058378446325,3.95115286763861,119.892573994889,0,0,1.14814448164607,4.73437036817464,3.8026080338233,26.1695775486299,16.7893434887624,51.7670847656724,40.918982902913,16.4660541072886,34.120015221269,27.385086549519,19.2165165330904,40.0990856994752,29.53316169228,28.0946273358718,2.29388645740534,0.831076008928724,41.1929548688808,0,0,17.4386085079145,41.0018307124632,17.2450549172081,1.13345112812495,5.21945949464557,7.5908739926941,0.574265537996172,0,0,18.5607779120874,11.0915004322544,13.3548197011733,30.8753922365349,14.93141403669,19.4322369845066,23.60777579426,20.1212400561626,0,0,0,0.2023155617111,10.6914476338376,26.7590494806044,6.2733354314454,0.308033580176089,6.38767236380426,8.69932992075073,1.11194531462352,5.29562080945368,18.980076837343,19.615524332561,16.9660872592204,29.4282460008034,14.5499255931533,5.40945521474092,3.13979456079692,18.1671182159148,25.257406735717,30.3955998051871,6.67202189191943,7.92551605865041,0.421258456238981,27.7951231281066,3.89941583410055,8.45201174054043,10.5104931784149,14.1405431953713,2.26016233240486,3.85955740482287,0.6634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| ||
|short_description=p1@IGF2BP1 | |short_description=p1@IGF2BP1 | ||
}} | }} |
Latest revision as of 19:42, 15 September 2015
Short description: | p1@IGF2BP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IGF2BP1_5end |
Coexpression cluster: | C2417_rhabdomyosarcoma_teratocarcinoma_neuroectodermal_neuroepithelioma_colon_medulloblastoma_testic |
Association with transcript: | 0bp_to_ENST00000510023_5end |
EntrezGene: | IGF2BP1 |
HGNC: | 28866 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.36e-10 | 250 |
electrically responsive cell | 4.09e-09 | 61 |
electrically active cell | 4.09e-09 | 61 |
mesodermal cell | 1.57e-08 | 121 |
muscle cell | 8.85e-08 | 55 |
muscle precursor cell | 1.96e-07 | 58 |
myoblast | 1.96e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.96e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 3.45e-10 | 160 |
entire embryonic mesenchyme | 3.45e-10 | 160 |
epithelial vesicle | 2.59e-09 | 78 |
unilaminar epithelium | 2.95e-07 | 148 |
somite | 3.80e-07 | 71 |
presomitic mesoderm | 3.80e-07 | 71 |
presumptive segmental plate | 3.80e-07 | 71 |
dermomyotome | 3.80e-07 | 71 |
trunk paraxial mesoderm | 3.80e-07 | 71 |
vasculature | 4.05e-07 | 78 |
vascular system | 4.05e-07 | 78 |
dense mesenchyme tissue | 5.25e-07 | 73 |
trunk mesenchyme | 5.97e-07 | 122 |
epithelial tube | 6.57e-07 | 117 |
paraxial mesoderm | 7.95e-07 | 72 |
presumptive paraxial mesoderm | 7.95e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.03e-12 | 22 |
germ cell cancer | 4.03e-12 | 22 |
cell type cancer | 2.20e-07 | 143 |