FFCP PHASE1:Hg19::chr12:20910262..20910266,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:20910262..20910266,- | |||
|coexpression_cluster_id=C221 | |||
|description=CAGE_peak_at_chr12:20910262..20910266,- | |description=CAGE_peak_at_chr12:20910262..20910266,- | ||
|id=chr12:20910262..20910266,- | |id=chr12:20910262..20910266,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000319;8.74e-15;1!CL:0002591;1.84e-14;1!CL:0000159;4.85e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000319,8.17e-15,1;CL:0002591,2.41e-14,1;CL:0000159,4.69e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0001041;2.19e-07;30 | |||
|ontology_enrichment_disease=DOID:305!3.26e-25!106;DOID:0050687!3.93e-22!143;DOID:162!7.72e-13!235;DOID:14566!2.49e-12!239;DOID:299!2.57e-07!25 | |ontology_enrichment_disease=DOID:305!3.26e-25!106;DOID:0050687!3.93e-22!143;DOID:162!7.72e-13!235;DOID:14566!2.49e-12!239;DOID:299!2.57e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:3030;8.74e-15;1!DOID:6193;1.84e-14;1!DOID:3910;3.56e-08;2!DOID:4929;4.23e-08;2!DOID:3350;7.03e-08;2!DOID:3493;7.03e-08;2!DOID:7;9.65e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,8.17e-15,1;DOID:6193,1.07e-14,1;DOID:305,6.35e-14,106;DOID:0050687,5.12e-12,143;DOID:7,1.91e-08,39;DOID:3910,3.56e-08,2;DOID:4929,4.09e-08,2;DOID:3350,5.37e-08,2;DOID:3493,6.15e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0002394!2.17e-07!4;UBERON:0003928!2.17e-07!4;UBERON:0002294!8.57e-07!7;UBERON:0001173!8.57e-07!7;UBERON:0004912!8.57e-07!7 | |ontology_enrichment_uberon=UBERON:0002394!2.17e-07!4;UBERON:0003928!2.17e-07!4;UBERON:0002294!8.57e-07!7;UBERON:0001173!8.57e-07!7;UBERON:0004912!8.57e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002394;1.16e-30;4!UBERON:0003928;1.16e-30;4!UBERON:0000058;8.34e-22;10!UBERON:0002294;7.84e-18;7!UBERON:0001173;7.84e-18;7!UBERON:0004913;6.65e-15;1!UBERON:0003703;6.65e-15;1!UBERON:0001174;6.65e-15;1!UBERON:0004914;6.65e-15;1!UBERON:0003343;3.05e-14;4!UBERON:0004785;3.05e-14;4!UBERON:0000974;8.29e-10;6!UBERON:0004903;3.56e-08;2!UBERON:0002173;3.56e-08;2!UBERON:0002186;3.56e-08;2!UBERON:0000078;7.03e-08;2!UBERON:0002012;7.03e-08;2!UBERON:0008886;7.03e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002394,1.02e-20,6;UBERON:0003928,1.02e-20,6;UBERON:0004913,6.22e-15,1;UBERON:0003703,6.22e-15,1;UBERON:0001174,6.22e-15,1;UBERON:0004914,6.22e-15,1;UBERON:0003343,3.85e-14,4;UBERON:0004785,3.85e-14,4;UBERON:0002294,4.95e-14,9;UBERON:0001173,4.95e-14,9;UBERON:0004912,4.95e-14,9;UBERON:0000058,1.23e-11,19;UBERON:0007499,6.71e-09,25;UBERON:0009856,1.45e-08,26;UBERON:0004903,3.56e-08,2;UBERON:0002173,3.56e-08,2;UBERON:0002186,3.56e-08,2;UBERON:0000078,8.04e-08,2;UBERON:0007497,8.04e-08,2;UBERON:0003643,8.04e-08,2;UBERON:0003504,8.04e-08,2;UBERON:0003469,8.04e-08,2;UBERON:0003496,8.04e-08,2;UBERON:0002012,8.04e-08,2;UBERON:0008886,8.04e-08,2;UBERON:0007303,8.04e-08,2;UBERON:0002061,8.04e-08,2;UBERON:0005432,8.04e-08,2;UBERON:0004363,8.04e-08,2;UBERON:0005911,2.25e-07,82 | |||
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| ||
|short_description=p@chr12:20910262..20910266,- | |short_description=p@chr12:20910262..20910266,- | ||
}} | }} |
Latest revision as of 07:28, 24 July 2015
Short description: | p@chr12:20910262..20910266, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:20910262..20910266, - |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucus secreting cell | 8.17e-15 | 1 |
smooth muscle cell of the pulmonary artery | 2.41e-14 | 1 |
seromucus secreting cell | 4.69e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
bile duct | 1.02e-20 | 6 |
digestive system duct | 1.02e-20 | 6 |
hepatopancreatic ampulla | 6.22e-15 | 1 |
extrahepatic bile duct | 6.22e-15 | 1 |
common bile duct | 6.22e-15 | 1 |
duodenal papilla | 6.22e-15 | 1 |
mucosa of oral region | 3.85e-14 | 4 |
respiratory system mucosa | 3.85e-14 | 4 |
biliary system | 4.95e-14 | 9 |
biliary tree | 4.95e-14 | 9 |
biliary bud | 4.95e-14 | 9 |
duct | 1.23e-11 | 19 |
epithelial sac | 6.71e-09 | 25 |
sac | 1.45e-08 | 26 |
bronchoalveolar duct junction | 3.56e-08 | 2 |
alveolar duct | 3.56e-08 | 2 |
bronchiole | 3.56e-08 | 2 |
mixed ectoderm/mesoderm/endoderm-derived structure | 8.04e-08 | 2 |
developing epithelial placode | 8.04e-08 | 2 |
respiratory system arterial blood vessel | 8.04e-08 | 2 |
respiratory system blood vessel | 8.04e-08 | 2 |
respiratory system artery | 8.04e-08 | 2 |
head blood vessel | 8.04e-08 | 2 |
pulmonary artery | 8.04e-08 | 2 |
pulmonary vascular system | 8.04e-08 | 2 |
pharyngeal vasculature | 8.04e-08 | 2 |
truncus arteriosus | 8.04e-08 | 2 |
aortic sac | 8.04e-08 | 2 |
pharyngeal arch artery | 8.04e-08 | 2 |
endo-epithelium | 2.25e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 8.17e-15 | 1 |
epithelioid sarcoma | 1.07e-14 | 1 |
carcinoma | 6.35e-14 | 106 |
cell type cancer | 5.12e-12 | 143 |
disease of anatomical entity | 1.91e-08 | 39 |
lung adenocarcinoma | 3.56e-08 | 2 |
tubular adenocarcinoma | 4.09e-08 | 2 |
mesenchymal cell neoplasm | 5.37e-08 | 2 |
signet ring cell adenocarcinoma | 6.15e-08 | 2 |