FFCP PHASE1:Hg19::chr18:12776132..12776137,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-210bp_to_BC065363_5end | |association_with_transcript=-210bp_to_BC065363_5end | ||
|cluster_id=chr18:12776132..12776137,- | |||
|coexpression_cluster_id=C46 | |||
|description=CAGE_peak_1_at_BC065363_5end | |description=CAGE_peak_1_at_BC065363_5end | ||
|id=chr18:12776132..12776137,- | |id=chr18:12776132..12776137,- | ||
|ontology_enrichment_celltype=CL:0000791!5.90e-21!18;CL:0000789!5.90e-21!18;CL:0002420!5.90e-21!18;CL:0002419!5.90e-21!18;CL:0000790!5.90e-21!18;CL:0000084!1.21e-19!25;CL:0000827!1.21e-19!25;CL:0000625!1.52e-12!11;CL:0000838!1.78e-10!52;CL:0000542!3.92e-10!53;CL:0000051!3.92e-10!53;CL:0000080!4.83e-09!6;CL:0000624!9.91e-09!6 | |ontology_enrichment_celltype=CL:0000791!5.90e-21!18;CL:0000789!5.90e-21!18;CL:0002420!5.90e-21!18;CL:0002419!5.90e-21!18;CL:0000790!5.90e-21!18;CL:0000084!1.21e-19!25;CL:0000827!1.21e-19!25;CL:0000625!1.52e-12!11;CL:0000838!1.78e-10!52;CL:0000542!3.92e-10!53;CL:0000051!3.92e-10!53;CL:0000080!4.83e-09!6;CL:0000624!9.91e-09!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.51e-35;18!CL:0000789;1.51e-35;18!CL:0002419;1.51e-35;18!CL:0000084;3.10e-35;25!CL:0000625;2.29e-23;11!CL:0000624;2.56e-11;6!CL:0000542;8.56e-11;53!CL:0000898;5.65e-09;3!CL:0000623;2.21e-08;3!CL:0000226;4.08e-08;3!CL:0000842;4.08e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.40e-35,18;CL:0000789,1.40e-35,18;CL:0002420,1.40e-35,18;CL:0002419,1.40e-35,18;CL:0000790,1.40e-35,18;CL:0000084,2.92e-35,25;CL:0000827,2.92e-35,25;CL:0000625,2.30e-23,11;CL:0000838,1.38e-19,52;CL:0000542,4.21e-19,53;CL:0000051,4.21e-19,53;CL:0000624,2.54e-11,6;CL:0002087,1.14e-09,115;CL:0000898,5.43e-09,3;CL:0000623,2.39e-08,3;CL:0000825,2.39e-08,3;CL:0000226,3.60e-08,3;CL:0000842,3.60e-08,3;CL:0000738,5.02e-08,136;CL:0000988,3.51e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000790;1.51e-35;18!CL:0000051;8.56e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.25e-09!15;UBERON:0000179!3.25e-09!15;UBERON:0000463!3.25e-09!15;UBERON:0000974!1.77e-08!10;UBERON:0004177!3.01e-07!7;UBERON:0002370!6.00e-07!4;UBERON:0005058!6.00e-07!4;UBERON:0009113!6.00e-07!4;UBERON:0003295!6.00e-07!4;UBERON:0005562!6.00e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.17e-10;15!UBERON:0000179;5.17e-10;15!UBERON:0000463;5.17e-10;15!UBERON:0002370;4.81e-07;2!UBERON:0005058;4.81e-07;2!UBERON:0009113;4.81e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000974,1.23e-12,10;UBERON:0002370,4.99e-12,4;UBERON:0005058,4.99e-12,4;UBERON:0009113,4.99e-12,4;UBERON:0003295,4.99e-12,4;UBERON:0005562,4.99e-12,4;UBERON:0000178,4.43e-10,15;UBERON:0000179,4.43e-10,15;UBERON:0000463,4.43e-10,15;UBERON:0003351,5.47e-08,6;UBERON:0001042,7.38e-07,10;UBERON:0009145,7.38e-07,10;UBERON:0004177,7.86e-07,7;UBERON:0005057,7.86e-07,7 | |||
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| ||
|short_description=p1@BC065363 | |short_description=p1@BC065363 | ||
}} | }} |
Latest revision as of 23:42, 25 July 2015
Short description: | p1@BC065363 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BC065363_5end |
Coexpression cluster: | C46_acute_Hodgkin_thymus_CD8_chronic_CD4_merkel |
Association with transcript: | -210bp_to_BC065363_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.40e-35 | 18 |
alpha-beta T cell | 1.40e-35 | 18 |
immature T cell | 1.40e-35 | 18 |
mature T cell | 1.40e-35 | 18 |
immature alpha-beta T cell | 1.40e-35 | 18 |
T cell | 2.92e-35 | 25 |
pro-T cell | 2.92e-35 | 25 |
CD8-positive, alpha-beta T cell | 2.30e-23 | 11 |
lymphoid lineage restricted progenitor cell | 1.38e-19 | 52 |
lymphocyte | 4.21e-19 | 53 |
common lymphoid progenitor | 4.21e-19 | 53 |
CD4-positive, alpha-beta T cell | 2.54e-11 | 6 |
nongranular leukocyte | 1.14e-09 | 115 |
naive T cell | 5.43e-09 | 3 |
natural killer cell | 2.39e-08 | 3 |
pro-NK cell | 2.39e-08 | 3 |
single nucleate cell | 3.60e-08 | 3 |
mononuclear cell | 3.60e-08 | 3 |
leukocyte | 5.02e-08 | 136 |
hematopoietic cell | 3.51e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
neck | 1.23e-12 | 10 |
thymus | 4.99e-12 | 4 |
hemolymphoid system gland | 4.99e-12 | 4 |
thymic region | 4.99e-12 | 4 |
pharyngeal gland | 4.99e-12 | 4 |
thymus primordium | 4.99e-12 | 4 |
blood | 4.43e-10 | 15 |
haemolymphatic fluid | 4.43e-10 | 15 |
organism substance | 4.43e-10 | 15 |
pharyngeal epithelium | 5.47e-08 | 6 |
chordate pharynx | 7.38e-07 | 10 |
pharyngeal region of foregut | 7.38e-07 | 10 |
hemopoietic organ | 7.86e-07 | 7 |
immune organ | 7.86e-07 | 7 |