FFCP PHASE1:Hg19::chr1:68257400..68257442,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:68257400..68257442,- | |||
|description=CAGE_peak_at_chr1:68257400..68257442,- | |description=CAGE_peak_at_chr1:68257400..68257442,- | ||
|id=chr1:68257400..68257442,- | |id=chr1:68257400..68257442,- | ||
|ontology_enrichment_celltype=CL:0000055!3.23e-32!180;CL:0000222!2.07e-27!119;CL:0000057!4.78e-22!75;CL:0000192!3.92e-16!42;CL:0000514!3.92e-16!42;CL:0000680!6.37e-16!57;CL:0000056!6.37e-16!57;CL:0000355!6.37e-16!57;CL:0000187!2.22e-15!54;CL:0000359!3.99e-14!32;CL:0000183!5.97e-14!59;CL:0000077!1.92e-13!19;CL:0000393!1.07e-12!60;CL:0000211!1.07e-12!60;CL:0000213!4.36e-12!57;CL:0000215!4.36e-12!57;CL:0000220!1.41e-11!246;CL:0000548!2.03e-11!679;CL:0000004!2.03e-11!679;CL:0000255!2.03e-11!679;CL:0002321!3.43e-11!248;CL:0000012!5.56e-11!682;CL:0002620!1.80e-10!23;CL:0000144!3.74e-09!625 | |ontology_enrichment_celltype=CL:0000055!3.23e-32!180;CL:0000222!2.07e-27!119;CL:0000057!4.78e-22!75;CL:0000192!3.92e-16!42;CL:0000514!3.92e-16!42;CL:0000680!6.37e-16!57;CL:0000056!6.37e-16!57;CL:0000355!6.37e-16!57;CL:0000187!2.22e-15!54;CL:0000359!3.99e-14!32;CL:0000183!5.97e-14!59;CL:0000077!1.92e-13!19;CL:0000393!1.07e-12!60;CL:0000211!1.07e-12!60;CL:0000213!4.36e-12!57;CL:0000215!4.36e-12!57;CL:0000220!1.41e-11!246;CL:0000548!2.03e-11!679;CL:0000004!2.03e-11!679;CL:0000255!2.03e-11!679;CL:0002321!3.43e-11!248;CL:0000012!5.56e-11!682;CL:0002620!1.80e-10!23;CL:0000144!3.74e-09!625 | ||
|ontology_enrichment_celltype_v019=CL:0000077;5.95e-18;19!CL:0000359;2.20e-15;32!CL:0000192;5.24e-12;43!CL:0002620;9.22e-10;23!CL:0000057;1.25e-08;73!CL:0002556;4.59e-08;6!CL:0000213;3.16e-07;58!CL:0000215;3.16e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.20e-23,121;CL:0000077,3.00e-18,19;CL:0000057,1.77e-17,76;CL:0000359,4.85e-16,32;CL:0000192,2.05e-14,43;CL:0000514,2.05e-14,43;CL:0000213,2.97e-13,58;CL:0000215,2.97e-13,58;CL:0002321,1.09e-10,250;CL:0000187,3.52e-10,55;CL:0002620,3.68e-10,23;CL:0000680,5.17e-10,58;CL:0000056,5.17e-10,58;CL:0000355,5.17e-10,58;CL:0000076,1.94e-08,63;CL:0000393,2.30e-08,61;CL:0000211,2.30e-08,61;CL:0002556,4.38e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000514;5.24e-12;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.20e-19!83;UBERON:0002329!1.20e-19!83;UBERON:0003077!1.20e-19!83;UBERON:0003059!1.20e-19!83;UBERON:0007282!1.20e-19!83;UBERON:0009618!1.20e-19!83;UBERON:0007285!1.20e-19!83;UBERON:0001637!5.15e-19!42;UBERON:0003509!5.15e-19!42;UBERON:0004572!5.15e-19!42;UBERON:0002049!1.22e-18!79;UBERON:0007798!1.22e-18!79;UBERON:0004290!1.92e-16!70;UBERON:0002385!3.73e-15!63;UBERON:0001015!3.73e-15!63;UBERON:0000383!3.73e-15!63;UBERON:0001981!4.69e-15!60;UBERON:0007500!4.69e-15!60;UBERON:0004537!4.69e-15!60;UBERON:0006965!4.69e-15!60;UBERON:0001134!4.76e-15!61;UBERON:0002036!4.76e-15!61;UBERON:0003082!4.76e-15!61;UBERON:0000055!7.25e-15!69;UBERON:0004573!3.65e-14!33;UBERON:0004571!3.65e-14!33;UBERON:0004872!7.79e-14!84;UBERON:0000486!1.68e-13!82;UBERON:0004535!2.01e-13!110;UBERON:0001009!1.99e-12!113;UBERON:0000490!2.73e-10!138;UBERON:0005256!4.39e-10!143;UBERON:0002100!2.58e-09!216;UBERON:0000947!2.10e-08!21;UBERON:0010191!2.10e-08!21;UBERON:0003914!1.11e-07!118;UBERON:0000475!1.40e-07!365;UBERON:0003102!2.15e-07!95;UBERON:0002199!8.38e-07!45;UBERON:0002416!8.38e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;4.97e-17;42!UBERON:0003509;4.97e-17;42!UBERON:0004572;4.97e-17;42!UBERON:0004573;1.61e-14;33!UBERON:0004571;1.61e-14;33!UBERON:0007500;3.02e-09;56!UBERON:0001981;3.02e-09;56!UBERON:0004537;3.02e-09;56!UBERON:0000947;6.78e-09;21!UBERON:0010191;6.78e-09;21!UBERON:0001758;4.59e-08;6!UBERON:0003672;4.59e-08;6!UBERON:0000075;7.96e-08;16!UBERON:0000055;5.85e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,3.85e-23,42;UBERON:0003509,3.85e-23,42;UBERON:0004572,3.85e-23,42;UBERON:0004573,4.22e-16,33;UBERON:0004571,4.22e-16,33;UBERON:0007500,3.31e-15,59;UBERON:0001981,3.31e-15,59;UBERON:0004537,3.31e-15,59;UBERON:0006965,3.31e-15,59;UBERON:0002049,8.57e-14,78;UBERON:0007798,8.57e-14,78;UBERON:0004872,6.15e-13,83;UBERON:0000055,1.29e-12,68;UBERON:0007524,3.11e-10,73;UBERON:0004535,4.83e-10,109;UBERON:0002329,7.14e-10,71;UBERON:0003059,7.14e-10,71;UBERON:0007282,7.14e-10,71;UBERON:0004290,7.14e-10,71;UBERON:0009618,7.14e-10,71;UBERON:0003077,1.34e-09,72;UBERON:0007285,1.34e-09,72;UBERON:0001009,1.95e-09,112;UBERON:0003102,3.34e-09,99;UBERON:0000486,5.15e-09,83;UBERON:0001134,8.15e-09,62;UBERON:0002036,8.15e-09,62;UBERON:0003082,8.15e-09,62;UBERON:0007503,8.26e-09,78;UBERON:0000947,1.11e-08,21;UBERON:0010191,1.11e-08,21;UBERON:0002385,2.79e-08,64;UBERON:0001015,2.79e-08,64;UBERON:0000383,2.79e-08,64;UBERON:0001758,4.38e-08,6;UBERON:0003672,4.38e-08,6;UBERON:0000075,7.43e-08,16;UBERON:0000490,1.55e-07,148;UBERON:0003914,8.12e-07,117;UBERON:0002097,8.35e-07,41;UBERON:0003129,9.62e-07,7 | |||
|phase1_expression=0.908391896352783,0.642301571672949,0.845726424575827,1.0007329835313,0.893922188854576,2.61701557230111,0,0.631719873426831,0.261185628199839,0.491467873003018,0,0,0,2.84662611808107,3.64537113300707,2.01697543935533,1.20538905604795,4.38186054232424,0,0.246242116153576,1.63200552995402,0,1.43117993565528,1.09499540058307,1.25542639594803,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,3.2529523714611,8.02140657017423,3.33146993609895,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,1.59009925893364,2.58070378531837,1.04142150482278,0.56530794192401,2.09749718104953,1.10047216776027,3.76190939766259,0.258416759169329,0.35576626268671,0.33472061276467,0,0,0,1.47065232138347,2.43042584364528,1.3394959242612,0.22452937262617,1.68917220724983,0,0.949265659568129,0.732806975721629,0,0,0,0.496971951695318,4.55869841992487,4.76673050927588,0.573673241497627,1.06400514659507,3.92474320099615,0,0.74000264525148,0.622422070799533,1.48181739276657,0.326923806226917,0.908144565869588,0.576175924479999,1.17160715916898,0.624320153660641,1.71141546463335,1.19558944441441,0.939475989150119,1.13311061057692,1.96631129383148,12.0450961040387,6.5102188175237,1.44656093646072,2.37600571456411,4.45080472701402,0,0.718618141816238,9.93183072328991,6.38104451347017,22.9963215851872,2.63386572528503,5.82326812018137,2.25357088359895,4.3104229600808,1.4351170855109,3.84403299873421,3.81477422087211,1.50045548042201,3.50378599410692,1.54584324027377,1.67505170698431,0.843881661206331,0,0.252433774244115,2.66944706062668,8.40559495457822,1.77504796258307,4.93685281315437,4.23901480776219,0,0,0,0,0,0,0.207322110030741,0,0,0,1.28648187638577,0,3.25057549622385,2.88751792667834,0.591534000199219,0.674338760312407,1.20505514941741,0.882351781859152,0.653638332277218,1.18635309555548,0.539325232640658,1.76599318612811,0.769494313892781,0,0,0,0,0,0,0,0,0,3.94605963686609,0,0,0,0,4.23550796903422,0,0,0,2.58299127318808,0,0.925971025153221,1.71228737011138,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0.308482478109971,0,0,3.1396703616701,0.43596006883328,5.867062865676,1.80980402060889,0,0.845302752556,1.32969058292435,4.16029747645464,0.257207374262142,1.41849132023278,0,1.42977993658148,0,0,0.65147236858747,0.710783897485092,0,10.5503781970855,2.61460037580088,3.29910870900788,0,0,0,13.179367052037,0,1.42636905040718,1.59259437334337,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,2.08575535922538,0.500170521059677,5.15403545029498,9.15071790735551,11.2410262942212,2.99634588564476,9.13703036943163,1.80567659836631,0,0,1.32845119707087,0.368738337083406,1.04260337361699,0,0.686286847621712,0,0,0,0,0,0,0.744323423456331,0.306923946576125,0.280660094433074,1.02511319404561,4.09365799253363,1.60853921143608,0,1.07946785661859,0.532685175939381,0.657017248110473,1.03850885836724,0.813472649219715,0,0,0,2.64073230778596,2.91345868810747,1.96686622439136,0,0.308061348417659,0,0,0,0,0.170093705276516,1.94324324491925,0,0,0,0,0,0,0,0,0.256450125116389,0.984043937099117,0.650756789328606,0,0,0,0,0,3.21367859688319,0,0.154048617114644,0.460511024178389,0.964856007391714,0.214840489736547,0.145016693914229,0.340906509664404,0.0890320356467374,0,0,0,0,4.64845549297286,3.46293581513704,0.6970372701606,5.23657086299351,3.72614221221915,0,5.18907813490976,23.4724814256866,0.372158369359667,9.17500331684305,2.47819252100972,0.255897791311334,0,1.59101623962968,2.35484592059769,0.719489830333259,2.47083326762449,1.53156123049392,4.65019707618627,15.8510321173008,0.842516912477962,0.975267478179181,1.94970791705028,0,4.91399681068749,0.282810863907425,2.26016233240486,2.2054613741845,13.9322184800656,8.33056681982149,0,1.31178950409327,2.43492452355245,2.16876448669825,1.69017361519345,0.143411352204052,0.687743287091848,2.85336841185,0.354761064070598,3.37772216476263,2.30506425071931,1.13841952129715,1.04980416073495,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0.852408440419239,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0.19924798825107,0.276283915531148,0,1.63629892003448,0,27.3714837142391,0,0,0,0.0986434056369336,0,2.22273980289274,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0.0769502585037971,0.797594390929008,0,0.269272933229316,0,0,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,1.26598838716816,0.489698424477443,0,0,0,0,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0.61214552326098,0.126373159256976,0,0,0,0.661983911750998,0.941798755221676,0,0.853828638089378,1.24807205711825,0,0,0.522355239482415,0,1.54787429224455,0.19351266257817,0,0,0.0969890164884194,0,0.225980740780532,0.685209623233754,0,0,0.19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| ||
|short_description=p@chr1:68257400..68257442,- | |short_description=p@chr1:68257400..68257442,- | ||
}} | }} |
Latest revision as of 10:05, 28 July 2015
Short description: | p@chr1:68257400..68257442, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:68257400..68257442, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.20e-23 | 121 |
mesothelial cell | 3.00e-18 | 19 |
fibroblast | 1.77e-17 | 76 |
vascular associated smooth muscle cell | 4.85e-16 | 32 |
smooth muscle cell | 2.05e-14 | 43 |
smooth muscle myoblast | 2.05e-14 | 43 |
lining cell | 2.97e-13 | 58 |
barrier cell | 2.97e-13 | 58 |
embryonic cell | 1.09e-10 | 250 |
muscle cell | 3.52e-10 | 55 |
skin fibroblast | 3.68e-10 | 23 |
muscle precursor cell | 5.17e-10 | 58 |
myoblast | 5.17e-10 | 58 |
multi-potent skeletal muscle stem cell | 5.17e-10 | 58 |
squamous epithelial cell | 1.94e-08 | 63 |
electrically responsive cell | 2.30e-08 | 61 |
electrically active cell | 2.30e-08 | 61 |
fibroblast of periodontium | 4.38e-08 | 6 |