FFCP PHASE1:Hg19::chr20:260022..260054,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:260022..260054,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_at_chr20:260022..260054,- | |description=CAGE_peak_at_chr20:260022..260054,- | ||
|id=chr20:260022..260054,- | |id=chr20:260022..260054,- | ||
|ontology_enrichment_celltype=CL:0000055!1.81e-11!180;CL:0000047!1.89e-08!8;CL:0000393!2.34e-08!60;CL:0000211!2.34e-08!60;CL:0000057!2.80e-07!75;CL:0000540!4.08e-07!6;CL:0000031!4.08e-07!6;CL:0000404!4.08e-07!6 | |ontology_enrichment_celltype=CL:0000055!1.81e-11!180;CL:0000047!1.89e-08!8;CL:0000393!2.34e-08!60;CL:0000211!2.34e-08!60;CL:0000057!2.80e-07!75;CL:0000540!4.08e-07!6;CL:0000031!4.08e-07!6;CL:0000404!4.08e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000540;1.17e-13;6!CL:0000404;1.17e-13;6!CL:0002262;4.72e-11;2!CL:1000398;4.72e-11;2!CL:0002367;1.10e-10;2!CL:0002319;4.33e-08;25!CL:0002605;2.12e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.88e-15,8;CL:0000540,1.20e-13,6;CL:0000031,1.20e-13,6;CL:0000404,1.20e-13,6;CL:0002262,3.89e-11,2;CL:1000398,3.89e-11,2;CL:0002367,9.55e-11,2;CL:0002319,5.41e-08,25;CL:0002605,3.80e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000031;1.17e-13;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.24e-07!365;UBERON:0000468!2.86e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001281;4.72e-11;2!UBERON:0003497;4.72e-11;2!UBERON:0003909;4.72e-11;2!UBERON:0003835;4.72e-11;2!UBERON:0005969;1.10e-10;2!UBERON:0003956;1.10e-10;2!UBERON:0001280;1.21e-07;3!UBERON:0004647;1.21e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,3.89e-11,2;UBERON:0003497,3.89e-11,2;UBERON:0003909,3.89e-11,2;UBERON:0003835,3.89e-11,2;UBERON:0005969,9.55e-11,2;UBERON:0003956,9.55e-11,2;UBERON:0004121,9.14e-09,171;UBERON:0000924,9.14e-09,171;UBERON:0006601,9.14e-09,171;UBERON:0001280,1.07e-07,3;UBERON:0004647,1.07e-07,3;UBERON:0005171,1.07e-07,3;UBERON:0001016,1.16e-07,89 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.281908808191942,0,0,0,0,0,0.522371256399677,0,0,0,0.263766978228454,0,0.331397375727916,0.672325146451775,0,0,0,0,0,0,0.85870796139317,1.23186982565596,1.00434111675842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2786256184353,0,0,0,0,0.486634870302636,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0,0.66944122552934,0.805658634218294,0,0,0,0,0.714397826272638,0.673588117878509,0.450445921933289,0,0,0.183201743930407,0,0,0,0.496971951695318,0,0,0,0.709336764396714,0.560677600142307,0,0,0,0,0,0.302714855289863,0.576175924479999,0.468642863667593,0,0.570471821544449,0.747243402759005,0.469737994575059,0.485618833104395,0.421352420106746,0.61246251376468,0.491337269247072,0.103325781175765,1.18800285728205,0,0.910161361938026,0.718618141816238,0.505008341862199,1.50142223846357,0,0,0,0,0.340296549480063,0,0,0,0.300091096084402,0.618315175430633,0,0.558350568994769,0,0,0,0,0.80823028409406,0.355009592516614,0.201504196455281,0,0.193260853163297,0.545492241181669,1.14721838155602,1.95157929807353,0.927708378250397,0.813357600086629,0.725627385107593,0.252320850875628,0,0,0.643240938192885,0,0,1.44375896333917,0,0,0,0,0,0,0,0,0,2.21446636387394,1.40241773803446,0.4115740113314,5.88034845542168,0,0,0,0,0,0.514703430895577,0,1.1240175325762,0,0.185176890317059,0,0,0,0,0.117408694235822,0.288732895522148,0,0.570762456703795,0,0,0,0,0,0,0,0.283550194484773,0,0,0.383382679165211,0.492663237895943,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.336393253036082,0.43596006883328,0.22001485746285,0,0,0,0,0,0.257207374262142,0,0,0.142977993658148,1.08524321078289,0,0.977208552881205,0.355391948742546,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,1.54657762555539,2.68026024534958,3.82763250991898,0,0,0,0,0,0.271265023699736,0.623912584592421,1.78428988797162,0.315404830067869,0,0,0,0,0.664225598535437,0,0.0868836144680828,0.783204629850962,0,0,0,0,0,0,0.907170879989041,0.248107807818777,0.153461973288062,0.280660094433074,0,0,0.321707842287215,0,0.308419387605311,0.887808626565635,0.328508624055237,0.519254429183621,0.348631135379878,0,0,0,0,0,0.131124414959424,0,0,0,0,0,1.13733384070897,1.02056223165909,0.215915916102139,0,0.541892875087706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386682873168488,0.462145851343933,0.921022048356777,0.827019434907183,0.859361958946189,1.16013355131383,0.511359764496605,0.445160178233687,0,0,0,0,0,0,0,0,0.532306030317022,0.869932992075073,0.37064843820784,0,0,0,0.190630193923825,0.255897791311334,0.42793898803392,0.636406495851874,0,0.179872457583315,0.54907405947211,0.353437207037059,0,0,0.842516912477962,0,0,0,0,0.424216295861138,0,0,0,0,0,1.31178950409327,0.405820753925408,0,0,0.860468113224309,0.294747123039363,0,0.709522128141196,0,0,1.13841952129715,1.74967360122491,0,0,2.17781969722645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0.0927680981618513,15.9691038400955,0,1.48681999993533,2.17499872630438,0,1.5255219017566,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0.31900115973192,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,1.20990716048664,4.59109142445735,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.0967563312890851,0,0,0,0,0,0,0,0.126621591911757,0.195551382734803,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403100834920358,0,0,0,0,0.0674035438541849,0,0,0,0.136203406111576,0.643012593860077,1.10031549277787,0.415440338029185,0,0,0,0,0,0.262272940674991,0,0,0,0,0,0.5085370753095,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0.314408610199332,0,0,0,0.243585196761792,0,0,0.2506898940227,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0.579684114443301,0.74627401443437,0,0.554805861502613,0,0.50313580350515,0,0,0.604923695052956,0.932623203496683,0.295710299979268,0.63718706865481,0,1.24210365501008,0,0.265841714557995,0,0.601030435988874,0.761610424337591,0.406870733204662,0.545545977607678,0.322231671127465,0.928067519756987,0,0,0,1.34699795506368,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0.139879507719444,0.622077260032973,1.79052119825112,0,0,0.982886743728125,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0,0,12.6035848110859,0,0.161475645631851,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.270150338473579,0,0,0.19024743058172,4.92277328116398,0.548257766857182,0,0.351742488719241,0,0,0.336283722218824,0,0,0,0,0,0,0.131545547125698,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,0,0,0,0,0.4226557275834,0,0,0.257831551894309,0,0,0,0,0,0,0,0,0,7.85431242612679,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0.303114792872958,0,0.829169439458779,0,0,0.23806443146374,0,0.0620747142958579,1.34558235096736,0.12729431655633,0.202117188958219,0.435433495793923,0.684466602170562,0.202056159043763,0.286888821570705,0,0,0,0,0,0,0.366724332548599,1.62758471326295,0,0.201273793591026,0 | |phase1_expression=0.181678379270557,0.214100523890983,0.281908808191942,0,0,0,0,0,0.522371256399677,0,0,0,0.263766978228454,0,0.331397375727916,0.672325146451775,0,0,0,0,0,0,0.85870796139317,1.23186982565596,1.00434111675842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2786256184353,0,0,0,0,0.486634870302636,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0,0.66944122552934,0.805658634218294,0,0,0,0,0.714397826272638,0.673588117878509,0.450445921933289,0,0,0.183201743930407,0,0,0,0.496971951695318,0,0,0,0.709336764396714,0.560677600142307,0,0,0,0,0,0.302714855289863,0.576175924479999,0.468642863667593,0,0.570471821544449,0.747243402759005,0.469737994575059,0.485618833104395,0.421352420106746,0.61246251376468,0.491337269247072,0.103325781175765,1.18800285728205,0,0.910161361938026,0.718618141816238,0.505008341862199,1.50142223846357,0,0,0,0,0.340296549480063,0,0,0,0.300091096084402,0.618315175430633,0,0.558350568994769,0,0,0,0,0.80823028409406,0.355009592516614,0.201504196455281,0,0.193260853163297,0.545492241181669,1.14721838155602,1.95157929807353,0.927708378250397,0.813357600086629,0.725627385107593,0.252320850875628,0,0,0.643240938192885,0,0,1.44375896333917,0,0,0,0,0,0,0,0,0,2.21446636387394,1.40241773803446,0.4115740113314,5.88034845542168,0,0,0,0,0,0.514703430895577,0,1.1240175325762,0,0.185176890317059,0,0,0,0,0.117408694235822,0.288732895522148,0,0.570762456703795,0,0,0,0,0,0,0,0.283550194484773,0,0,0.383382679165211,0.492663237895943,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.336393253036082,0.43596006883328,0.22001485746285,0,0,0,0,0,0.257207374262142,0,0,0.142977993658148,1.08524321078289,0,0.977208552881205,0.355391948742546,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,1.54657762555539,2.68026024534958,3.82763250991898,0,0,0,0,0,0.271265023699736,0.623912584592421,1.78428988797162,0.315404830067869,0,0,0,0,0.664225598535437,0,0.0868836144680828,0.783204629850962,0,0,0,0,0,0,0.907170879989041,0.248107807818777,0.153461973288062,0.280660094433074,0,0,0.321707842287215,0,0.308419387605311,0.887808626565635,0.328508624055237,0.519254429183621,0.348631135379878,0,0,0,0,0,0.131124414959424,0,0,0,0,0,1.13733384070897,1.02056223165909,0.215915916102139,0,0.541892875087706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386682873168488,0.462145851343933,0.921022048356777,0.827019434907183,0.859361958946189,1.16013355131383,0.511359764496605,0.445160178233687,0,0,0,0,0,0,0,0,0.532306030317022,0.869932992075073,0.37064843820784,0,0,0,0.190630193923825,0.255897791311334,0.42793898803392,0.636406495851874,0,0.179872457583315,0.54907405947211,0.353437207037059,0,0,0.842516912477962,0,0,0,0,0.424216295861138,0,0,0,0,0,1.31178950409327,0.405820753925408,0,0,0.860468113224309,0.294747123039363,0,0.709522128141196,0,0,1.13841952129715,1.74967360122491,0,0,2.17781969722645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0.0927680981618513,15.9691038400955,0,1.48681999993533,2.17499872630438,0,1.5255219017566,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0.31900115973192,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0.394584402849391,1.20990716048664,4.59109142445735,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.0967563312890851,0,0,0,0,0,0,0,0.126621591911757,0.195551382734803,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403100834920358,0,0,0,0,0.0674035438541849,0,0,0,0.136203406111576,0.643012593860077,1.10031549277787,0.415440338029185,0,0,0,0,0,0.262272940674991,0,0,0,0,0,0.5085370753095,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0.314408610199332,0,0,0,0.243585196761792,0,0,0.2506898940227,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0.579684114443301,0.74627401443437,0,0.554805861502613,0,0.50313580350515,0,0,0.604923695052956,0.932623203496683,0.295710299979268,0.63718706865481,0,1.24210365501008,0,0.265841714557995,0,0.601030435988874,0.761610424337591,0.406870733204662,0.545545977607678,0.322231671127465,0.928067519756987,0,0,0,1.34699795506368,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0.139879507719444,0.622077260032973,1.79052119825112,0,0,0.982886743728125,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0,0,12.6035848110859,0,0.161475645631851,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.270150338473579,0,0,0.19024743058172,4.92277328116398,0.548257766857182,0,0.351742488719241,0,0,0.336283722218824,0,0,0,0,0,0,0.131545547125698,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,0,0,0,0,0.4226557275834,0,0,0.257831551894309,0,0,0,0,0,0,0,0,0,7.85431242612679,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0.303114792872958,0,0.829169439458779,0,0,0.23806443146374,0,0.0620747142958579,1.34558235096736,0.12729431655633,0.202117188958219,0.435433495793923,0.684466602170562,0.202056159043763,0.286888821570705,0,0,0,0,0,0,0.366724332548599,1.62758471326295,0,0.201273793591026,0 | ||
|short_description=p@chr20:260022..260054,- | |short_description=p@chr20:260022..260054,- | ||
}} | }} |
Latest revision as of 12:44, 28 July 2015
Short description: | p@chr20:260022..260054, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:260022..260054, - |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.88e-15 | 8 |
neuron | 1.20e-13 | 6 |
neuroblast | 1.20e-13 | 6 |
electrically signaling cell | 1.20e-13 | 6 |
endothelial cell of sinusoid | 3.89e-11 | 2 |
endothelial cell of hepatic sinusoid | 3.89e-11 | 2 |
trabecular meshwork cell | 9.55e-11 | 2 |
neural cell | 5.41e-08 | 25 |
astrocyte of the cerebral cortex | 3.80e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 3.89e-11 | 2 |
abdomen blood vessel | 3.89e-11 | 2 |
sinusoid | 3.89e-11 | 2 |
abdominal segment blood vessel | 3.89e-11 | 2 |
reticulum trabeculare | 9.55e-11 | 2 |
aqueous drainage system | 9.55e-11 | 2 |
ectoderm-derived structure | 9.14e-09 | 171 |
ectoderm | 9.14e-09 | 171 |
presumptive ectoderm | 9.14e-09 | 171 |
liver parenchyma | 1.07e-07 | 3 |
liver lobule | 1.07e-07 | 3 |
hepatic duct | 1.07e-07 | 3 |
nervous system | 1.16e-07 | 89 |