FFCP PHASE1:Hg19::chr17:79670386..79670427,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1468,6182 | |EntrezGene=1468,6182 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10378,10980 | |HGNC=10378,10980 | ||
|TSSclassifier=strong | |||
|UniProt=P52815,B4DLN1 | |UniProt=P52815,B4DLN1 | ||
|association_with_transcript=0bp_to_ENST00000333676,ENST00000541223,NM_002949,uc002kbh.1,uc010wut.1_5end | |association_with_transcript=0bp_to_ENST00000333676,ENST00000541223,NM_002949,uc002kbh.1,uc010wut.1_5end | ||
|cluster_id=chr17:79670386..79670427,+ | |||
|coexpression_cluster_id=C447 | |||
|description=CAGE_peak_2_at_MRPL12_5end,CAGE_peak_2_at_SLC25A10_5end | |description=CAGE_peak_2_at_MRPL12_5end,CAGE_peak_2_at_SLC25A10_5end | ||
|id=chr17:79670386..79670427,+ | |id=chr17:79670386..79670427,+ | ||
|ontology_enrichment_celltype=CL:0000548!8.37e-27!679;CL:0000004!8.37e-27!679;CL:0000255!8.37e-27!679;CL:0000220!9.03e-27!246;CL:0002321!4.65e-26!248;CL:0000012!8.25e-26!682;CL:0000222!3.82e-21!119;CL:0000066!4.03e-21!254;CL:0000144!2.26e-16!625;CL:0000003!6.68e-16!722;CL:0002371!4.78e-15!591;CL:0000055!4.35e-14!180;CL:0000183!3.26e-13!59;CL:0000680!2.92e-12!57;CL:0000056!2.92e-12!57;CL:0000355!2.92e-12!57;CL:0000187!1.25e-11!54;CL:0000393!2.51e-11!60;CL:0000211!2.51e-11!60;CL:0000192!4.26e-11!42;CL:0000514!4.26e-11!42;CL:0000063!9.39e-10!578;CL:0000359!5.26e-09!32;CL:0000213!2.26e-08!57;CL:0000215!2.26e-08!57;CL:0000076!7.92e-08!62;CL:0002078!2.36e-07!44;CL:1000449!5.76e-07!16 | |ontology_enrichment_celltype=CL:0000548!8.37e-27!679;CL:0000004!8.37e-27!679;CL:0000255!8.37e-27!679;CL:0000220!9.03e-27!246;CL:0002321!4.65e-26!248;CL:0000012!8.25e-26!682;CL:0000222!3.82e-21!119;CL:0000066!4.03e-21!254;CL:0000144!2.26e-16!625;CL:0000003!6.68e-16!722;CL:0002371!4.78e-15!591;CL:0000055!4.35e-14!180;CL:0000183!3.26e-13!59;CL:0000680!2.92e-12!57;CL:0000056!2.92e-12!57;CL:0000355!2.92e-12!57;CL:0000187!1.25e-11!54;CL:0000393!2.51e-11!60;CL:0000211!2.51e-11!60;CL:0000192!4.26e-11!42;CL:0000514!4.26e-11!42;CL:0000063!9.39e-10!578;CL:0000359!5.26e-09!32;CL:0000213!2.26e-08!57;CL:0000215!2.26e-08!57;CL:0000076!7.92e-08!62;CL:0002078!2.36e-07!44;CL:1000449!5.76e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.76e-08;32!CL:1000449;9.26e-08;15!CL:0000192;1.42e-07;43!CL:0002681;5.51e-07;12!CL:0002584;5.51e-07;12!CL:0000187;6.10e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.29e-26,250;CL:0000066,2.18e-21,253;CL:0000222,3.45e-21,121;CL:0000680,8.45e-12,58;CL:0000056,8.45e-12,58;CL:0000355,8.45e-12,58;CL:0000187,3.60e-11,55;CL:0000393,6.59e-11,61;CL:0000211,6.59e-11,61;CL:0000192,1.42e-10,43;CL:0000514,1.42e-10,43;CL:0000359,5.26e-09,32;CL:0000213,9.10e-09,58;CL:0000215,9.10e-09,58;CL:0002078,9.28e-08,45;CL:0000076,9.39e-08,63;CL:1000449,9.59e-08,15;CL:0000115,4.20e-07,36;CL:0002681,5.52e-07,12;CL:0002584,5.52e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;1.42e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!2.98e-19!238;UBERON:0009142!2.98e-19!238;UBERON:0005256!5.23e-18!143;UBERON:0002100!2.27e-17!216;UBERON:0000490!2.74e-16!138;UBERON:0003914!4.73e-16!118;UBERON:0000486!1.28e-15!82;UBERON:0004290!1.41e-14!70;UBERON:0000914!2.68e-13!83;UBERON:0002329!2.68e-13!83;UBERON:0003077!2.68e-13!83;UBERON:0003059!2.68e-13!83;UBERON:0007282!2.68e-13!83;UBERON:0009618!2.68e-13!83;UBERON:0007285!2.68e-13!83;UBERON:0001134!5.59e-12!61;UBERON:0002036!5.59e-12!61;UBERON:0003082!5.59e-12!61;UBERON:0002385!8.00e-11!63;UBERON:0001015!8.00e-11!63;UBERON:0000383!8.00e-11!63;UBERON:0002049!9.90e-11!79;UBERON:0007798!9.90e-11!79;UBERON:0000055!6.59e-10!69;UBERON:0004872!1.29e-09!84;UBERON:0001981!1.55e-09!60;UBERON:0007500!1.55e-09!60;UBERON:0004537!1.55e-09!60;UBERON:0006965!1.55e-09!60;UBERON:0001637!5.84e-09!42;UBERON:0003509!5.84e-09!42;UBERON:0004572!5.84e-09!42;UBERON:0009569!8.44e-08!113;UBERON:0001009!1.19e-07!113;UBERON:0001737!2.06e-07!9;UBERON:0000926!2.21e-07!448;UBERON:0004120!2.21e-07!448;UBERON:0006603!2.21e-07!448;UBERON:0000481!3.53e-07!347;UBERON:0004535!3.88e-07!110;UBERON:0004211!5.76e-07!16;UBERON:0001285!5.76e-07!16;UBERON:0007684!5.76e-07!16;UBERON:0003220!5.76e-07!16;UBERON:0004208!5.76e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;6.03e-08;74!UBERON:0006555;9.26e-08;15!UBERON:0004819;9.26e-08;15!UBERON:0001285;9.26e-08;15!UBERON:0007684;9.26e-08;15!UBERON:0000353;1.44e-07;15!UBERON:0001737;2.06e-07;9!UBERON:0001557;2.06e-07;9!UBERON:0001225;5.51e-07;12!UBERON:0008987;5.51e-07;12!UBERON:0001851;8.25e-07;15 | |||
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|short_description=p2@MRPL12,p2@SLC25A10 | |short_description=p2@MRPL12,p2@SLC25A10 | ||
}} | }} |
Latest revision as of 08:10, 18 September 2015
Short description: | p2@MRPL12, p2@SLC25A10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MRPL12_5end, CAGE_peak_2_at_SLC25A10_5end |
Coexpression cluster: | C447_Alveolar_Bronchial_Smooth_Renal_Tracheal_Keratocytes_Hepatic |
Association with transcript: | 0bp_to_ENST00000333676, ENST00000541223, NM_002949, uc002kbh.1, uc010wut.1_5end |
EntrezGene: | 1468,6182 |
HGNC: | 10980&submit=Submit 10378, 10980 |
UniProt: | P52815B4DLN1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.29e-26 | 250 |
epithelial cell | 2.18e-21 | 253 |
mesodermal cell | 3.45e-21 | 121 |
muscle precursor cell | 8.45e-12 | 58 |
myoblast | 8.45e-12 | 58 |
multi-potent skeletal muscle stem cell | 8.45e-12 | 58 |
muscle cell | 3.60e-11 | 55 |
electrically responsive cell | 6.59e-11 | 61 |
electrically active cell | 6.59e-11 | 61 |
smooth muscle cell | 1.42e-10 | 43 |
smooth muscle myoblast | 1.42e-10 | 43 |
vascular associated smooth muscle cell | 5.26e-09 | 32 |
lining cell | 9.10e-09 | 58 |
barrier cell | 9.10e-09 | 58 |
meso-epithelial cell | 9.28e-08 | 45 |
squamous epithelial cell | 9.39e-08 | 63 |
epithelial cell of nephron | 9.59e-08 | 15 |
endothelial cell | 4.20e-07 | 36 |
kidney cortical cell | 5.52e-07 | 12 |
renal cortical epithelial cell | 5.52e-07 | 12 |