FFCP PHASE1:Hg19::chr19:39694894..39694909,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=342898 | |EntrezGene=342898 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18442 | |HGNC=18442 | ||
|TSSclassifier=strong | |||
|UniProt=Q0VAF6 | |UniProt=Q0VAF6 | ||
|association_with_transcript=0bp_to_ENST00000318438,NM_001080468,uc002okr.2_5end | |association_with_transcript=0bp_to_ENST00000318438,NM_001080468,uc002okr.2_5end | ||
|cluster_id=chr19:39694894..39694909,- | |||
|coexpression_cluster_id=C27 | |||
|description=CAGE_peak_1_at_SYCN_5end | |description=CAGE_peak_1_at_SYCN_5end | ||
|id=chr19:39694894..39694909,- | |id=chr19:39694894..39694909,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.11e-12;1!UBERON:0006965;7.61e-07;2 | |||
|ontology_enrichment_disease=DOID:114!1.28e-14!2;DOID:178!3.58e-08!1;DOID:326!3.58e-08!1;DOID:3978!3.58e-08!1;DOID:3394!3.58e-08!1;DOID:5844!3.58e-08!1;DOID:1287!9.64e-08!4 | |||
|ontology_enrichment_disease_v019=DOID:114;7.23e-23;2!DOID:178;2.33e-12;1!DOID:326;2.33e-12;1!DOID:3978;2.33e-12;1!DOID:3394;2.33e-12;1!DOID:5844;2.33e-12;1!DOID:1287;6.20e-12;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,7.65e-23,2;DOID:178,2.46e-12,1;DOID:326,2.46e-12,1;DOID:3978,2.46e-12,1;DOID:3394,2.46e-12,1;DOID:5844,2.46e-12,1;DOID:1287,6.37e-12,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.35e-11!115;UBERON:0003978!8.21e-10!3;UBERON:0009751!8.21e-10!3;UBERON:0000946!8.21e-10!3;UBERON:0002523!8.21e-10!3;UBERON:0005983!8.21e-10!3;UBERON:0002165!8.21e-10!3;UBERON:0002062!8.21e-10!3;UBERON:0007280!8.21e-10!3;UBERON:0007029!2.52e-08!1;UBERON:0006834!4.71e-08!1;UBERON:0002146!5.40e-08!1;UBERON:0005623!5.40e-08!1;UBERON:0002134!5.79e-08!1;UBERON:0005208!5.79e-08!1;UBERON:0005946!5.79e-08!1;UBERON:0005965!5.79e-08!1;UBERON:0002078!5.79e-08!1;UBERON:0007190!9.94e-08!1;UBERON:0002581!1.21e-07!1 | |ontology_enrichment_uberon=UBERON:0007023!1.35e-11!115;UBERON:0003978!8.21e-10!3;UBERON:0009751!8.21e-10!3;UBERON:0000946!8.21e-10!3;UBERON:0002523!8.21e-10!3;UBERON:0005983!8.21e-10!3;UBERON:0002165!8.21e-10!3;UBERON:0002062!8.21e-10!3;UBERON:0007280!8.21e-10!3;UBERON:0007029!2.52e-08!1;UBERON:0006834!4.71e-08!1;UBERON:0002146!5.40e-08!1;UBERON:0005623!5.40e-08!1;UBERON:0002134!5.79e-08!1;UBERON:0005208!5.79e-08!1;UBERON:0005946!5.79e-08!1;UBERON:0005965!5.79e-08!1;UBERON:0002078!5.79e-08!1;UBERON:0007190!9.94e-08!1;UBERON:0002581!1.21e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0007029;1.40e-12;1!UBERON:0006834;3.85e-12;1!UBERON:0002146;3.85e-12;1!UBERON:0005623;3.85e-12;1!UBERON:0002108;7.77e-10;4!UBERON:0002370;8.29e-07;2!UBERON:0005058;8.29e-07;2!UBERON:0009113;8.29e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007029,1.40e-12,1;UBERON:0006834,3.85e-12,1;UBERON:0002146,4.81e-12,1;UBERON:0005623,4.81e-12,1;UBERON:0002108,7.11e-10,4 | |||
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|short_description=p1@SYCN | |short_description=p1@SYCN | ||
}} | }} |
Latest revision as of 21:29, 17 September 2015
Short description: | p1@SYCN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SYCN_5end |
Coexpression cluster: | C27_pancreas_temporal_duodenum_salivary_ductus_umbilical_lung |
Association with transcript: | 0bp_to_ENST00000318438, NM_001080468, uc002okr.2_5end |
EntrezGene: | SYCN |
HGNC: | 18442 |
UniProt: | Q0VAF6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
surface | 1.40e-12 | 1 |
uterus or analog | 3.85e-12 | 1 |
pulmonary valve | 4.81e-12 | 1 |
semi-lunar valve | 4.81e-12 | 1 |
small intestine | 7.11e-10 | 4 |
Ontology term | p-value | n |
---|---|---|
heart disease | 7.65e-23 | 2 |
vascular disease | 2.46e-12 | 1 |
ischemia | 2.46e-12 | 1 |
extrinsic cardiomyopathy | 2.46e-12 | 1 |
myocardial ischemia | 2.46e-12 | 1 |
myocardial infarction | 2.46e-12 | 1 |
cardiovascular system disease | 6.37e-12 | 4 |