FFCP PHASE1:Hg19::chr1:955448..955508,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=375790 | |EntrezGene=375790 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=329 | |HGNC=329 | ||
|TSSclassifier=strong | |||
|UniProt=O00468 | |UniProt=O00468 | ||
|association_with_transcript=0bp_to_ENST00000379370,NM_198576,uc001ack.1_5end | |association_with_transcript=0bp_to_ENST00000379370,NM_198576,uc001ack.1_5end | ||
|cluster_id=chr1:955448..955508,+ | |||
|description=CAGE_peak_1_at_AGRN_5end | |description=CAGE_peak_1_at_AGRN_5end | ||
|id=chr1:955448..955508,+ | |id=chr1:955448..955508,+ | ||
|ontology_enrichment_celltype=CL:0000066!9.26e-59!254;CL:0002321!3.21e-28!248;CL:0000220!7.04e-28!246;CL:0000223!5.37e-15!59;CL:0000076!3.47e-14!62;CL:0002076!2.14e-13!43;CL:1000497!1.87e-09!18;CL:0002518!1.87e-09!18;CL:0000213!5.44e-09!57;CL:0000215!5.44e-09!57;CL:0000077!2.28e-08!19;CL:1000449!3.31e-08!16;CL:0000548!6.59e-08!679;CL:0000004!6.59e-08!679;CL:0000255!6.59e-08!679;CL:0000222!1.06e-07!119;CL:0002077!1.98e-07!33;CL:0000075!2.23e-07!27;CL:0000012!2.97e-07!682;CL:0002368!3.29e-07!13;CL:0000221!8.75e-07!71 | |ontology_enrichment_celltype=CL:0000066!9.26e-59!254;CL:0002321!3.21e-28!248;CL:0000220!7.04e-28!246;CL:0000223!5.37e-15!59;CL:0000076!3.47e-14!62;CL:0002076!2.14e-13!43;CL:1000497!1.87e-09!18;CL:0002518!1.87e-09!18;CL:0000213!5.44e-09!57;CL:0000215!5.44e-09!57;CL:0000077!2.28e-08!19;CL:1000449!3.31e-08!16;CL:0000548!6.59e-08!679;CL:0000004!6.59e-08!679;CL:0000255!6.59e-08!679;CL:0000222!1.06e-07!119;CL:0002077!1.98e-07!33;CL:0000075!2.23e-07!27;CL:0000012!2.97e-07!682;CL:0002368!3.29e-07!13;CL:0000221!8.75e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0002076;3.11e-11;42!CL:1000497;1.24e-10;17!CL:0002518;1.24e-10;17!CL:1000449;2.35e-09;15!CL:0000077;2.28e-08;19!CL:1000507;6.25e-08;10!CL:1000494;6.25e-08;10!CL:0002681;2.11e-07;12!CL:0002584;2.11e-07;12!CL:0000075;2.26e-07;27!CL:0000066;2.93e-07;253!CL:0002368;3.14e-07;13!CL:0000076;8.63e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.41e-59,253;CL:0002321,1.40e-27,250;CL:0000223,6.63e-16,58;CL:0002076,2.02e-14,42;CL:0000076,2.83e-13,63;CL:1000497,1.23e-10,17;CL:0002518,1.23e-10,17;CL:1000449,2.33e-09,15;CL:0000213,5.46e-09,58;CL:0000215,5.46e-09,58;CL:0000077,2.24e-08,19;CL:1000507,6.28e-08,10;CL:1000494,6.28e-08,10;CL:0000222,2.06e-07,121;CL:0002681,2.09e-07,12;CL:0002584,2.09e-07,12;CL:0000075,2.19e-07,27;CL:0002368,3.24e-07,13 | |||
|ontology_enrichment_development_v019=CL:0000223;8.03e-09;58 | |||
|ontology_enrichment_disease=DOID:305!8.58e-17!106;DOID:0050687!1.37e-16!143;DOID:162!1.65e-09!235;DOID:14566!1.10e-08!239;DOID:7!8.89e-08!39;DOID:299!1.98e-07!25 | |ontology_enrichment_disease=DOID:305!8.58e-17!106;DOID:0050687!1.37e-16!143;DOID:162!1.65e-09!235;DOID:14566!1.10e-08!239;DOID:7!8.89e-08!39;DOID:299!1.98e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:299;1.97e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.86e-17,106;DOID:0050687,1.69e-16,143;DOID:162,2.44e-09,235;DOID:14566,1.60e-08,239;DOID:7,8.73e-08,39;DOID:299,1.94e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.46e-15!169;UBERON:0000925!2.46e-15!169;UBERON:0006595!2.46e-15!169;UBERON:0005177!3.66e-15!107;UBERON:0000481!1.89e-14!347;UBERON:0000466!4.35e-14!126;UBERON:0000483!9.97e-14!309;UBERON:0000119!1.30e-13!312;UBERON:0009569!1.03e-12!113;UBERON:0005911!1.28e-12!82;UBERON:0006554!1.51e-12!44;UBERON:0000468!1.54e-12!659;UBERON:0000475!1.94e-12!365;UBERON:0003104!1.96e-12!238;UBERON:0009142!1.96e-12!238;UBERON:0001048!3.25e-12!168;UBERON:0005172!3.85e-12!55;UBERON:0005173!3.85e-12!55;UBERON:0001008!5.75e-12!45;UBERON:0001007!1.74e-11!155;UBERON:0001555!1.74e-11!155;UBERON:0007026!1.74e-11!155;UBERON:0000467!2.24e-11!625;UBERON:0000480!4.67e-11!626;UBERON:0000464!6.40e-11!104;UBERON:0000477!1.93e-10!286;UBERON:0000064!2.38e-10!219;UBERON:0002100!2.45e-10!216;UBERON:0002417!5.70e-10!61;UBERON:0000916!5.70e-10!61;UBERON:0000062!7.32e-10!511;UBERON:0004111!8.39e-10!241;UBERON:0003914!8.71e-10!118;UBERON:0000922!1.06e-09!612;UBERON:0004921!2.96e-09!129;UBERON:0004185!2.96e-09!129;UBERON:0000058!3.42e-09!26;UBERON:0003064!5.12e-09!37;UBERON:0000077!5.63e-09!130;UBERON:0002113!6.67e-09!27;UBERON:0003918!6.67e-09!27;UBERON:0005095!6.67e-09!27;UBERON:0007687!6.67e-09!27;UBERON:0002050!7.94e-09!605;UBERON:0005423!7.94e-09!605;UBERON:0000923!1.08e-08!604;UBERON:0005291!1.08e-08!604;UBERON:0006598!1.08e-08!604;UBERON:0002532!1.08e-08!604;UBERON:0004211!3.31e-08!16;UBERON:0001285!3.31e-08!16;UBERON:0007684!3.31e-08!16;UBERON:0003220!3.31e-08!16;UBERON:0004208!3.31e-08!16;UBERON:0000489!4.74e-08!32;UBERON:0006555!5.07e-08!17;UBERON:0005103!5.07e-08!17;UBERON:0000083!5.07e-08!17;UBERON:0009201!5.07e-08!17;UBERON:0004819!5.07e-08!17;UBERON:0006553!5.07e-08!17;UBERON:0003074!5.07e-08!17;UBERON:0003060!5.07e-08!17;UBERON:0001041!1.24e-07!98;UBERON:0000353!1.66e-07!17;UBERON:0001851!1.67e-07!16;UBERON:0003929!2.49e-07!54;UBERON:0000080!2.57e-07!18;UBERON:0002120!2.57e-07!18;UBERON:0004875!2.57e-07!18;UBERON:0005721!2.57e-07!18;UBERON:0005754!2.57e-07!18;UBERON:0007297!2.57e-07!18;UBERON:0002553!3.19e-07!70;UBERON:0005157!3.36e-07!51;UBERON:0005153!5.13e-07!37;UBERON:0004876!5.25e-07!20;UBERON:0000490!6.72e-07!138;UBERON:0001004!7.95e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;9.63e-13;30!UBERON:0001008;9.63e-13;30!UBERON:0002113;1.34e-10;24!UBERON:0011143;1.34e-10;24!UBERON:0000489;2.29e-09;29!UBERON:0006555;2.35e-09;15!UBERON:0004819;2.35e-09;15!UBERON:0001285;2.35e-09;15!UBERON:0007684;2.35e-09;15!UBERON:0001851;1.46e-08;15!UBERON:0000353;1.86e-08;15!UBERON:0005172;1.89e-08;52!UBERON:0005173;1.89e-08;52!UBERON:0004211;6.25e-08;10!UBERON:0009773;6.25e-08;10!UBERON:0001231;6.25e-08;10!UBERON:0004810;6.25e-08;10!UBERON:0001225;2.11e-07;12!UBERON:0008987;2.11e-07;12!UBERON:0005911;7.31e-07;36!UBERON:0002417;9.13e-07;58!UBERON:0000916;9.13e-07;58 | |||
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| ||
|short_description=p1@AGRN | |short_description=p1@AGRN | ||
}} | }} |
Latest revision as of 23:45, 19 September 2015
Short description: | p1@AGRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AGRN_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000379370, NM_198576, uc001ack.1_5end |
EntrezGene: | AGRN |
HGNC: | 329 |
UniProt: | O00468 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.41e-59 | 253 |
embryonic cell | 1.40e-27 | 250 |
endodermal cell | 6.63e-16 | 58 |
endo-epithelial cell | 2.02e-14 | 42 |
squamous epithelial cell | 2.83e-13 | 63 |
kidney cell | 1.23e-10 | 17 |
kidney epithelial cell | 1.23e-10 | 17 |
epithelial cell of nephron | 2.33e-09 | 15 |
lining cell | 5.46e-09 | 58 |
barrier cell | 5.46e-09 | 58 |
mesothelial cell | 2.24e-08 | 19 |
kidney tubule cell | 6.28e-08 | 10 |
nephron tubule epithelial cell | 6.28e-08 | 10 |
mesodermal cell | 2.06e-07 | 121 |
kidney cortical cell | 2.09e-07 | 12 |
renal cortical epithelial cell | 2.09e-07 | 12 |
columnar/cuboidal epithelial cell | 2.19e-07 | 27 |
respiratory epithelial cell | 3.24e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.86e-17 | 106 |
cell type cancer | 1.69e-16 | 143 |
cancer | 2.44e-09 | 235 |
disease of cellular proliferation | 1.60e-08 | 239 |
disease of anatomical entity | 8.73e-08 | 39 |
adenocarcinoma | 1.94e-07 | 25 |