FFCP PHASE1:Hg19::chr8:42623701..42623709,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8973 | |EntrezGene=8973 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15963 | |HGNC=15963 | ||
|TSSclassifier=strong | |||
|UniProt=B4DQH1 | |UniProt=B4DQH1 | ||
|association_with_transcript=43bp_to_ENST00000534622_5end | |association_with_transcript=43bp_to_ENST00000534622_5end | ||
|cluster_id=chr8:42623701..42623709,- | |||
|description=CAGE_peak_4_at_CHRNA6_5end | |description=CAGE_peak_4_at_CHRNA6_5end | ||
|id=chr8:42623701..42623709,- | |id=chr8:42623701..42623709,- | ||
|ontology_enrichment_celltype=CL:0000838!1.92e-09!52;CL:0000542!3.31e-09!53;CL:0000051!3.31e-09!53 | |ontology_enrichment_celltype=CL:0000838!1.92e-09!52;CL:0000542!3.31e-09!53;CL:0000051!3.31e-09!53 | ||
|ontology_enrichment_celltype_v019=CL:0002569;8.34e-18;6!CL:0000081;2.27e-10;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002569,9.07e-18,6;CL:0000081,2.37e-10,11 | |||
|ontology_enrichment_development_v019=UBERON:0004872;1.78e-15;7 | |||
|ontology_enrichment_disease=DOID:0060058!2.26e-12!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;2.87e-11;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,2.73e-11,10 | |||
|ontology_enrichment_uberon=UBERON:0001049!8.15e-14!57;UBERON:0005068!8.15e-14!57;UBERON:0006241!8.15e-14!57;UBERON:0007135!8.15e-14!57;UBERON:0003075!1.13e-12!86;UBERON:0007284!1.13e-12!86;UBERON:0005743!1.83e-12!86;UBERON:0002346!6.95e-12!90;UBERON:0001017!7.84e-12!82;UBERON:0002616!1.25e-11!59;UBERON:0000073!8.06e-11!94;UBERON:0001016!8.06e-11!94;UBERON:0000955!1.85e-10!69;UBERON:0006238!1.85e-10!69;UBERON:0003076!8.96e-10!15;UBERON:0003057!8.96e-10!15;UBERON:0000153!2.04e-09!129;UBERON:0007811!2.04e-09!129;UBERON:0004733!2.76e-09!12;UBERON:0002028!2.76e-09!12;UBERON:0007277!2.76e-09!12;UBERON:0000033!3.95e-09!123;UBERON:0002680!5.78e-09!9;UBERON:0001895!5.78e-09!9;UBERON:0010092!5.78e-09!9;UBERON:0002331!9.03e-09!10;UBERON:0000358!9.03e-09!10;UBERON:0000307!9.03e-09!10;UBERON:0000091!9.03e-09!10;UBERON:0000087!9.03e-09!10;UBERON:0007806!9.03e-09!10;UBERON:0008780!9.03e-09!10;UBERON:0005728!9.03e-09!10;UBERON:0004732!1.61e-08!13;UBERON:0007023!1.99e-08!115;UBERON:0002360!1.31e-07!2;UBERON:0000094!1.31e-07!2;UBERON:0007645!1.31e-07!2;UBERON:0002780!3.25e-07!41;UBERON:0001890!3.25e-07!41;UBERON:0006240!3.25e-07!41;UBERON:0003080!5.35e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;5.04e-34;3!UBERON:0004177;4.66e-21;5!UBERON:0005057;4.66e-21;5!UBERON:0003422;8.34e-18;6!UBERON:0003104;1.78e-15;7!UBERON:0009142;1.78e-15;7!UBERON:0002331;2.87e-11;10!UBERON:0002075;7.39e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,4.27e-34,3;UBERON:0004854,4.27e-34,3;UBERON:0009034,4.27e-34,3;UBERON:0002095,4.27e-34,3;UBERON:0004782,4.27e-34,3;UBERON:0003281,4.27e-34,3;UBERON:0009664,4.27e-34,3;UBERON:0002296,4.27e-34,3;UBERON:0005602,4.27e-34,3;UBERON:0001179,4.27e-34,3;UBERON:0006293,4.27e-34,3;UBERON:0003422,9.07e-18,6;UBERON:0004177,1.65e-15,7;UBERON:0005057,1.65e-15,7;UBERON:0000945,9.39e-14,8;UBERON:0010039,9.39e-14,8;UBERON:0002331,3.02e-11,10;UBERON:0000358,3.02e-11,10;UBERON:0000307,3.02e-11,10;UBERON:0000091,3.02e-11,10;UBERON:0000087,3.02e-11,10;UBERON:0007010,3.02e-11,10;UBERON:0007806,3.02e-11,10;UBERON:0008780,3.02e-11,10;UBERON:0005728,3.02e-11,10;UBERON:0004457,1.22e-09,12;UBERON:0000042,1.22e-09,12;UBERON:0003887,1.22e-09,12;UBERON:0002075,7.18e-07,18 | |||
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| ||
|short_description=p4@CHRNA6 | |short_description=p4@CHRNA6 | ||
}} | }} |
Latest revision as of 08:21, 18 September 2015
Short description: | p4@CHRNA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CHRNA6_5end |
Coexpression cluster: | NA |
Association with transcript: | 43bp_to_ENST00000534622_5end |
EntrezGene: | CHRNA6 |
HGNC: | 15963 |
UniProt: | B4DQH1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of umbilical cord | 9.07e-18 | 6 |
blood cell | 2.37e-10 | 11 |
Ontology term | p-value | n |
---|---|---|
spleen | 4.27e-34 | 3 |
gastrointestinal system mesentery | 4.27e-34 | 3 |
stomach region | 4.27e-34 | 3 |
mesentery | 4.27e-34 | 3 |
gastrointestinal system serosa | 4.27e-34 | 3 |
mesentery of stomach | 4.27e-34 | 3 |
gut mesentery | 4.27e-34 | 3 |
dorsal mesentery | 4.27e-34 | 3 |
dorsal mesogastrium | 4.27e-34 | 3 |
peritoneal cavity | 4.27e-34 | 3 |
spleen primordium | 4.27e-34 | 3 |
mesenchyme of umbilical cord | 9.07e-18 | 6 |
hemopoietic organ | 1.65e-15 | 7 |
immune organ | 1.65e-15 | 7 |
stomach | 9.39e-14 | 8 |
food storage organ | 9.39e-14 | 8 |
umbilical cord | 3.02e-11 | 10 |
blastocyst | 3.02e-11 | 10 |
blastula | 3.02e-11 | 10 |
bilaminar disc | 3.02e-11 | 10 |
inner cell mass | 3.02e-11 | 10 |
cleaving embryo | 3.02e-11 | 10 |
connecting stalk | 3.02e-11 | 10 |
inner cell mass derived epiblast | 3.02e-11 | 10 |
extraembryonic mesoderm | 3.02e-11 | 10 |
cavity lining | 1.22e-09 | 12 |
serous membrane | 1.22e-09 | 12 |
intraembryonic coelom | 1.22e-09 | 12 |
viscus | 7.18e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 2.73e-11 | 10 |