FFCP PHASE1:Hg19::chrX:37765335..37765354,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-45bp_to_ENST00000449263_5end | |association_with_transcript=-45bp_to_ENST00000449263_5end | ||
|cluster_id=chrX:37765335..37765354,+ | |||
|coexpression_cluster_id=C4871 | |||
|description=CAGE_peak_5_at_ENST00000449263_5end | |description=CAGE_peak_5_at_ENST00000449263_5end | ||
|id=chrX:37765335..37765354,+ | |id=chrX:37765335..37765354,+ | ||
|ontology_enrichment_celltype=CL:0000133!3.92e-08!59;CL:0002319!9.80e-08!25;CL:0000128!1.05e-07!7;CL:0000126!1.05e-07!7;CL:0000127!1.05e-07!7;CL:0002453!1.05e-07!7;CL:0000147!3.37e-07!14 | |ontology_enrichment_celltype=CL:0000133!3.92e-08!59;CL:0002319!9.80e-08!25;CL:0000128!1.05e-07!7;CL:0000126!1.05e-07!7;CL:0000127!1.05e-07!7;CL:0002453!1.05e-07!7;CL:0000147!3.37e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0002586;1.18e-20;3!CL:0000149;1.23e-15;4!CL:0000047;5.99e-14;2!CL:0000128;6.04e-09;7!CL:0000126;6.04e-09;7!CL:0000127;6.04e-09;7!CL:0002319;4.08e-08;25!CL:0000147;8.67e-08;14!CL:0002174;1.18e-07;1!CL:0000501;1.18e-07;1!CL:0000306;3.03e-07;4!CL:0002222;3.03e-07;4!CL:0002224;3.03e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,1.11e-20,3;CL:0000149,1.17e-15,4;CL:0000128,4.35e-09,7;CL:0000126,4.35e-09,7;CL:0000127,4.35e-09,7;CL:0002453,4.35e-09,7;CL:0002319,3.80e-08,25;CL:0000147,8.45e-08,14;CL:0002174,1.26e-07,1;CL:0000501,1.26e-07,1;CL:0000306,2.20e-07,4;CL:0002222,2.20e-07,4;CL:0002224,2.20e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;3.03e-07;4!DOID:1612;3.03e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,2.42e-07,4;DOID:1612,2.42e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0005743!2.82e-21!86;UBERON:0000073!3.91e-20!94;UBERON:0001016!3.91e-20!94;UBERON:0002346!8.62e-18!90;UBERON:0001017!1.61e-17!82;UBERON:0003075!4.16e-16!86;UBERON:0007284!4.16e-16!86;UBERON:0000924!2.60e-15!173;UBERON:0006601!2.60e-15!173;UBERON:0004121!6.14e-14!169;UBERON:0007625!2.40e-13!11;UBERON:0003056!4.20e-13!61;UBERON:0000955!4.85e-11!69;UBERON:0006238!4.85e-11!69;UBERON:0001049!4.93e-11!57;UBERON:0005068!4.93e-11!57;UBERON:0006241!4.93e-11!57;UBERON:0007135!4.93e-11!57;UBERON:0000153!1.44e-10!129;UBERON:0007811!1.44e-10!129;UBERON:0000033!2.34e-10!123;UBERON:0002616!2.41e-10!59;UBERON:0002020!5.31e-10!34;UBERON:0003528!5.31e-10!34;UBERON:0001869!1.24e-09!32;UBERON:0002791!3.34e-09!33;UBERON:0001893!8.47e-09!34;UBERON:0000019!4.76e-08!19;UBERON:0000047!4.76e-08!19;UBERON:0004088!4.76e-08!19;UBERON:0003072!4.76e-08!19;UBERON:0003071!4.76e-08!19;UBERON:0004128!4.76e-08!19;UBERON:0000956!8.49e-08!25;UBERON:0000203!8.49e-08!25;UBERON:0000970!1.69e-07!20;UBERON:0002780!2.54e-07!41;UBERON:0001890!2.54e-07!41;UBERON:0006240!2.54e-07!41;UBERON:0005174!4.28e-07!5;UBERON:0001137!4.28e-07!5;UBERON:0000475!4.57e-07!365;UBERON:0003080!4.87e-07!42;UBERON:0002104!5.28e-07!21;UBERON:0001456!5.28e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;9.43e-21;11!UBERON:0001781;1.18e-20;3!UBERON:0001782;1.18e-20;3!UBERON:0000966;1.29e-12;5!UBERON:0005388;1.29e-12;5!UBERON:0001802;1.29e-12;5!UBERON:0000019;8.35e-12;19!UBERON:0000047;8.35e-12;19!UBERON:0004088;8.35e-12;19!UBERON:0010230;8.35e-12;19!UBERON:0000970;3.45e-11;20!UBERON:0002104;1.25e-10;21!UBERON:0001456;1.25e-10;21!UBERON:0000020;1.17e-09;23!UBERON:0001032;3.11e-09;24!UBERON:0004456;3.11e-09;24!UBERON:0010371;7.97e-09;31!UBERON:0001052;3.03e-07;4!UBERON:0010077;3.03e-07;4!UBERON:0005389;3.03e-07;4!UBERON:0000484;3.03e-07;4!UBERON:0000965;3.03e-07;4!UBERON:0001803;3.03e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,7.94e-21,11;UBERON:0001782,1.11e-20,3;UBERON:0005424,1.11e-20,3;UBERON:0001781,1.17e-15,4;UBERON:0000019,3.15e-11,20;UBERON:0000047,3.15e-11,20;UBERON:0010312,3.15e-11,20;UBERON:0004088,3.15e-11,20;UBERON:0010230,3.15e-11,20;UBERON:0003072,3.15e-11,20;UBERON:0004128,3.15e-11,20;UBERON:0003071,3.15e-11,20;UBERON:0000970,1.15e-10,21;UBERON:0002104,1.15e-10,21;UBERON:0000966,1.31e-10,6;UBERON:0005388,1.31e-10,6;UBERON:0001802,1.31e-10,6;UBERON:0001456,3.70e-10,22;UBERON:0000020,2.88e-09,24;UBERON:0001032,2.88e-09,24;UBERON:0004456,2.88e-09,24;UBERON:0010077,2.20e-07,4;UBERON:0005389,2.20e-07,4;UBERON:0000484,2.20e-07,4;UBERON:0002546,2.20e-07,4;UBERON:0000965,2.20e-07,4;UBERON:0001803,2.20e-07,4;UBERON:0003073,2.20e-07,4;UBERON:0005426,2.20e-07,4;UBERON:0001052,3.03e-07,4;UBERON:0005085,4.75e-07,31 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.495065411840187,0.331397375727916,0,0,0,0,1.47745269692145,0.204000691244253,0,0.572471974262113,1.91624195102038,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.756278537312543,1.10864698731282,0.527008714158756,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0.151357427644931,0.576175924479999,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.484938170456436,0,0,0.169560592310488,0,0,0,0,0,2.32387885739037,0.10366105501537,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.860919069801795,0.343135620597051,0,0,0,0,0,0,1.44331342025273,1.85488647960123,0.352226082707465,0,0,0,0.790204397959275,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190493682876507,0.381988425558278,0,0,0,0,0,0,0.43596006883328,0.7333828582095,0.387815147273333,0,0,7.44626726437637,4.16029747645464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,2.03275699377971,1.30139853857622,0,0.502548796003046,0.637938751653163,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532685175939381,0.657017248110473,1.03850885836724,0,4.47179963489002,0,0,0.114814448164607,0.182091168006717,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,3.07740150139667,2.29610251989794,2.92840555197873,0,0.183138929636687,0.082509499920588,0,0,0,0.096670718292122,0,0,0.137836572484531,0.214840489736547,0,0,0,0,0,0,0,0,0,0,0,0,0.869932992075073,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.409499734223957,0.141405431953713,0,0.551365343546124,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,0,8.590569330181,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,1.30213880542617,0,0,0,0,0,0,0,0,0.885741385813839,0.723578631752448,0,0,0,0.219385397153973,0,0,0.307801034015188,0,0,0,0,0,2.01514705484097,0.533034776018635,0,0,0,0,0,0,0,0,0,0,1.27217764290547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300646838828985,1.65901106235595,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0.443175571691151,0,0.0801588202515337,0,0,0,0,0,0,0,0,0.135904206073614,0,0,1.15580235960608,0,0,0,1.28929632425987,0,0,0,0,0,0,0,0.739018197353989,0,0,0,0,0,2.36225955635397,0,0,0.408610218334727,0,0.275078873194468,0.415440338029185,0,0,0.364497339948148,0,0.0788057072991982,0.367182116944987,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0.39669780522807,0.513260513652988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.250381861413,0,0.110929051536852,0.124192805882767,0,0,0.303298235083296,3.99651466962954,0,0,0,0.149254802886874,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0.465788870628778,0.414706207840855,0,3.65221543268214,0,0,0.406870733204662,1.09109195521536,0,0,1.19428766609585,0,0,0,0,0,0.428883182749851,0,0,1.15761237161917,0,0.179088841081487,0,0.219284049578707,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0,0,0,0.943595651135378,0.109209638192014,0.509197589862076,0,0.123935764259002,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0.0691572524642179,0.484426936895553,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0.147856086217045,0,0,0,0.0634158101939068,0,0,0,0.175871244359621,0,0,0,0,0,0.177404740325278,0,0.342976018874837,0.271878931907327,0.0657727735628491,0,0,0,0.157115589916002,1.40136081656895,0,0,0,0.571812353413251,0,0,0,0,0,0,0,0,0,0,0,0,0.62041277132864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0.252332849670158,0,0.126698501011437,0.203977659483963,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0.23806443146374,0,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,7.18601616852695,0,0.366724332548599,0.406896178315738,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.495065411840187,0.331397375727916,0,0,0,0,1.47745269692145,0.204000691244253,0,0.572471974262113,1.91624195102038,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.756278537312543,1.10864698731282,0.527008714158756,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0.151357427644931,0.576175924479999,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.484938170456436,0,0,0.169560592310488,0,0,0,0,0,2.32387885739037,0.10366105501537,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.860919069801795,0.343135620597051,0,0,0,0,0,0,1.44331342025273,1.85488647960123,0.352226082707465,0,0,0,0.790204397959275,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190493682876507,0.381988425558278,0,0,0,0,0,0,0.43596006883328,0.7333828582095,0.387815147273333,0,0,7.44626726437637,4.16029747645464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,2.03275699377971,1.30139853857622,0,0.502548796003046,0.637938751653163,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532685175939381,0.657017248110473,1.03850885836724,0,4.47179963489002,0,0,0.114814448164607,0.182091168006717,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,3.07740150139667,2.29610251989794,2.92840555197873,0,0.183138929636687,0.082509499920588,0,0,0,0.096670718292122,0,0,0.137836572484531,0.214840489736547,0,0,0,0,0,0,0,0,0,0,0,0,0.869932992075073,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.409499734223957,0.141405431953713,0,0.551365343546124,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,0,8.590569330181,0,0,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,1.30213880542617,0,0,0,0,0,0,0,0,0.885741385813839,0.723578631752448,0,0,0,0.219385397153973,0,0,0.307801034015188,0,0,0,0,0,2.01514705484097,0.533034776018635,0,0,0,0,0,0,0,0,0,0,1.27217764290547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300646838828985,1.65901106235595,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0.443175571691151,0,0.0801588202515337,0,0,0,0,0,0,0,0,0.135904206073614,0,0,1.15580235960608,0,0,0,1.28929632425987,0,0,0,0,0,0,0,0.739018197353989,0,0,0,0,0,2.36225955635397,0,0,0.408610218334727,0,0.275078873194468,0.415440338029185,0,0,0.364497339948148,0,0.0788057072991982,0.367182116944987,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0.39669780522807,0.513260513652988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0.250381861413,0,0.110929051536852,0.124192805882767,0,0,0.303298235083296,3.99651466962954,0,0,0,0.149254802886874,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0.465788870628778,0.414706207840855,0,3.65221543268214,0,0,0.406870733204662,1.09109195521536,0,0,1.19428766609585,0,0,0,0,0,0.428883182749851,0,0,1.15761237161917,0,0.179088841081487,0,0.219284049578707,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0,0,0,0.943595651135378,0.109209638192014,0.509197589862076,0,0.123935764259002,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0.0691572524642179,0.484426936895553,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0.147856086217045,0,0,0,0.0634158101939068,0,0,0,0.175871244359621,0,0,0,0,0,0.177404740325278,0,0.342976018874837,0.271878931907327,0.0657727735628491,0,0,0,0.157115589916002,1.40136081656895,0,0,0,0.571812353413251,0,0,0,0,0,0,0,0,0,0,0,0,0.62041277132864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392616934229891,0.297046400327086,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0.252332849670158,0,0.126698501011437,0.203977659483963,0,0,0,0.0757786982182394,0,0,0.103432995861895,0,0.23806443146374,0,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,7.18601616852695,0,0.366724332548599,0.406896178315738,0,0,0 | ||
|short_description=p5@ENST00000449263 | |short_description=p5@ENST00000449263 | ||
}} | }} |
Latest revision as of 07:56, 1 August 2015
Short description: | p5@ENST00000449263 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ENST00000449263_5end |
Coexpression cluster: | C4871_Mesenchymal_astrocytoma_tubular_melanoma_Prostate_MCF7_mesenchymal |
Association with transcript: | -45bp_to_ENST00000449263_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 1.11e-20 | 3 |
visual pigment cell | 1.17e-15 | 4 |
oligodendrocyte | 4.35e-09 | 7 |
macroglial cell | 4.35e-09 | 7 |
astrocyte | 4.35e-09 | 7 |
oligodendrocyte precursor cell | 4.35e-09 | 7 |
neural cell | 3.80e-08 | 25 |
pigment cell | 8.45e-08 | 14 |
follicular cell of ovary | 1.26e-07 | 1 |
granulosa cell | 1.26e-07 | 1 |
crystallin accumulating cell | 2.20e-07 | 4 |
vertebrate lens cell | 2.20e-07 | 4 |
lens epithelial cell | 2.20e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 7.94e-21 | 11 |
pigmented layer of retina | 1.11e-20 | 3 |
presumptive retinal pigmented epithelium | 1.11e-20 | 3 |
layer of retina | 1.17e-15 | 4 |
camera-type eye | 3.15e-11 | 20 |
simple eye | 3.15e-11 | 20 |
immature eye | 3.15e-11 | 20 |
ocular region | 3.15e-11 | 20 |
eyeball of camera-type eye | 3.15e-11 | 20 |
optic cup | 3.15e-11 | 20 |
optic vesicle | 3.15e-11 | 20 |
eye primordium | 3.15e-11 | 20 |
eye | 1.15e-10 | 21 |
visual system | 1.15e-10 | 21 |
retina | 1.31e-10 | 6 |
photoreceptor array | 1.31e-10 | 6 |
posterior segment of eyeball | 1.31e-10 | 6 |
face | 3.70e-10 | 22 |
sense organ | 2.88e-09 | 24 |
sensory system | 2.88e-09 | 24 |
entire sense organ system | 2.88e-09 | 24 |
cuboidal epithelium | 2.20e-07 | 4 |
transparent eye structure | 2.20e-07 | 4 |
simple cuboidal epithelium | 2.20e-07 | 4 |
cranial placode | 2.20e-07 | 4 |
lens of camera-type eye | 2.20e-07 | 4 |
epithelium of lens | 2.20e-07 | 4 |
lens placode | 2.20e-07 | 4 |
lens vesicle | 2.20e-07 | 4 |
rectum | 3.03e-07 | 4 |
ectodermal placode | 4.75e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 2.42e-07 | 4 |
breast cancer | 2.42e-07 | 4 |