FFCP PHASE1:Hg19::chrX:65259884..65259896,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11326 | |EntrezGene=11326 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17032 | |HGNC=17032 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_ENST00000412866_5end | |association_with_transcript=5bp_to_ENST00000412866_5end | ||
|cluster_id=chrX:65259884..65259896,- | |||
|coexpression_cluster_id=C67 | |||
|description=CAGE_peak_2_at_VSIG4_5end | |description=CAGE_peak_2_at_VSIG4_5end | ||
|id=chrX:65259884..65259896,- | |id=chrX:65259884..65259896,- | ||
|ontology_enrichment_celltype=CL:0002194!9.11e-20!63;CL:0000576!9.11e-20!63;CL:0000040!9.11e-20!63;CL:0000559!9.11e-20!63;CL:0002009!9.52e-20!65;CL:0000557!9.18e-19!71;CL:0000766!1.27e-18!76;CL:0000839!2.77e-18!70;CL:0002057!2.81e-18!42;CL:0000860!2.21e-16!45;CL:0000763!4.11e-14!112;CL:0000049!4.11e-14!112;CL:0002087!2.68e-07!119;CL:0000738!2.75e-07!140 | |ontology_enrichment_celltype=CL:0002194!9.11e-20!63;CL:0000576!9.11e-20!63;CL:0000040!9.11e-20!63;CL:0000559!9.11e-20!63;CL:0002009!9.52e-20!65;CL:0000557!9.18e-19!71;CL:0000766!1.27e-18!76;CL:0000839!2.77e-18!70;CL:0002057!2.81e-18!42;CL:0000860!2.21e-16!45;CL:0000763!4.11e-14!112;CL:0000049!4.11e-14!112;CL:0002087!2.68e-07!119;CL:0000738!2.75e-07!140 | ||
|ontology_enrichment_celltype_v019=CL:0000473;7.80e-18;39!CL:0000234;7.80e-18;39!CL:0000860;4.22e-13;33!CL:0002057;4.22e-13;33!CL:0000235;4.40e-13;6!CL:0000576;5.99e-12;48!CL:0000766;4.23e-08;69!CL:0002619;1.58e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,6.54e-21,48;CL:0000234,6.54e-21,48;CL:0002194,4.40e-20,59;CL:0000576,4.40e-20,59;CL:0000040,4.40e-20,59;CL:0000559,4.40e-20,59;CL:0002009,3.86e-19,61;CL:0000839,4.88e-17,66;CL:0000557,1.18e-16,67;CL:0000766,5.09e-16,72;CL:0000860,4.12e-13,42;CL:0002057,4.12e-13,42;CL:0000235,4.50e-13,6;CL:0000763,3.03e-10,108;CL:0000049,3.03e-10,108;CL:0002619,1.59e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;5.60e-11;42!UBERON:0004872;5.52e-09;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.31e-69!115;UBERON:0001049!2.18e-25!57;UBERON:0005068!2.18e-25!57;UBERON:0006241!2.18e-25!57;UBERON:0007135!2.18e-25!57;UBERON:0002616!1.21e-19!59;UBERON:0003080!2.60e-19!42;UBERON:0002780!2.77e-18!41;UBERON:0001890!2.77e-18!41;UBERON:0006240!2.77e-18!41;UBERON:0003075!4.13e-18!86;UBERON:0007284!4.13e-18!86;UBERON:0001017!2.92e-17!82;UBERON:0005743!6.48e-17!86;UBERON:0002346!1.21e-16!90;UBERON:0002390!1.58e-16!102;UBERON:0003061!1.58e-16!102;UBERON:0000955!9.60e-16!69;UBERON:0006238!9.60e-16!69;UBERON:0002193!2.18e-15!112;UBERON:0002371!3.81e-15!80;UBERON:0000073!5.47e-14!94;UBERON:0001016!5.47e-14!94;UBERON:0000062!2.01e-13!511;UBERON:0001474!3.45e-13!86;UBERON:0001893!4.74e-13!34;UBERON:0002020!5.51e-13!34;UBERON:0003528!5.51e-13!34;UBERON:0002405!5.73e-13!115;UBERON:0002791!2.21e-12!33;UBERON:0003056!2.32e-11!61;UBERON:0001869!2.50e-11!32;UBERON:0004765!4.90e-10!101;UBERON:0001434!4.90e-10!101;UBERON:0002420!2.07e-09!9;UBERON:0007245!2.07e-09!9;UBERON:0010009!2.07e-09!9;UBERON:0010011!2.07e-09!9;UBERON:0000454!2.07e-09!9;UBERON:0002298!3.07e-09!8;UBERON:0002308!3.55e-09!9;UBERON:0000125!3.55e-09!9;UBERON:0000467!1.02e-08!625;UBERON:0000480!1.23e-08!626;UBERON:0000153!1.95e-08!129;UBERON:0007811!1.95e-08!129;UBERON:0002619!3.47e-08!22;UBERON:0001950!7.44e-08!20;UBERON:0000468!7.52e-08!659;UBERON:0000922!1.24e-07!612;UBERON:0009663!1.34e-07!7;UBERON:0000033!2.03e-07!123;UBERON:0002050!2.17e-07!605;UBERON:0005423!2.17e-07!605;UBERON:0001894!2.36e-07!7;UBERON:0006222!2.36e-07!7;UBERON:0003076!2.90e-07!15;UBERON:0003057!2.90e-07!15;UBERON:0000923!4.20e-07!604;UBERON:0005291!4.20e-07!604;UBERON:0006598!4.20e-07!604;UBERON:0002532!4.20e-07!604;UBERON:0000956!9.00e-07!25;UBERON:0000203!9.00e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;2.77e-10;114!UBERON:0002780;6.28e-07;41!UBERON:0001890;6.28e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.96e-44,114;UBERON:0002371,1.09e-13,76;UBERON:0002405,1.11e-12,93;UBERON:0001474,4.37e-12,82;UBERON:0002390,2.14e-11,98;UBERON:0003061,2.14e-11,98;UBERON:0001049,2.15e-11,56;UBERON:0005068,2.15e-11,56;UBERON:0006241,2.15e-11,56;UBERON:0007135,2.15e-11,56;UBERON:0002193,1.90e-10,108;UBERON:0004765,2.65e-10,90;UBERON:0000073,7.01e-09,53;UBERON:0002616,7.01e-09,53;UBERON:0001434,1.66e-08,100;UBERON:0001017,2.61e-08,81;UBERON:0002780,8.96e-08,41;UBERON:0001890,8.96e-08,41;UBERON:0003080,8.96e-08,41;UBERON:0006240,8.96e-08,41;UBERON:0003075,1.70e-07,82;UBERON:0007284,1.70e-07,82;UBERON:0002346,7.19e-07,86;UBERON:0001016,7.27e-07,89 | |||
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| ||
|short_description=p2@VSIG4 | |short_description=p2@VSIG4 | ||
}} | }} |
Latest revision as of 04:51, 16 September 2015
Short description: | p2@VSIG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VSIG4_5end |
Coexpression cluster: | C67_CD14_Monocytederived_Macrophage_dura_Dendritic_spleen_lung |
Association with transcript: | 5bp_to_ENST00000412866_5end |
EntrezGene: | VSIG4 |
HGNC: | 17032 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 6.54e-21 | 48 |
phagocyte | 6.54e-21 | 48 |
monopoietic cell | 4.40e-20 | 59 |
monocyte | 4.40e-20 | 59 |
monoblast | 4.40e-20 | 59 |
promonocyte | 4.40e-20 | 59 |
macrophage dendritic cell progenitor | 3.86e-19 | 61 |
myeloid lineage restricted progenitor cell | 4.88e-17 | 66 |
granulocyte monocyte progenitor cell | 1.18e-16 | 67 |
myeloid leukocyte | 5.09e-16 | 72 |
classical monocyte | 4.12e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.12e-13 | 42 |
macrophage | 4.50e-13 | 6 |
myeloid cell | 3.03e-10 | 108 |
common myeloid progenitor | 3.03e-10 | 108 |
adult endothelial progenitor cell | 1.59e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.96e-44 | 114 |
bone marrow | 1.09e-13 | 76 |
immune system | 1.11e-12 | 93 |
bone element | 4.37e-12 | 82 |
hematopoietic system | 2.14e-11 | 98 |
blood island | 2.14e-11 | 98 |
neural tube | 2.15e-11 | 56 |
neural rod | 2.15e-11 | 56 |
future spinal cord | 2.15e-11 | 56 |
neural keel | 2.15e-11 | 56 |
hemolymphoid system | 1.90e-10 | 108 |
skeletal element | 2.65e-10 | 90 |
regional part of nervous system | 7.01e-09 | 53 |
regional part of brain | 7.01e-09 | 53 |
skeletal system | 1.66e-08 | 100 |
central nervous system | 2.61e-08 | 81 |
regional part of forebrain | 8.96e-08 | 41 |
forebrain | 8.96e-08 | 41 |
anterior neural tube | 8.96e-08 | 41 |
future forebrain | 8.96e-08 | 41 |
neural plate | 1.70e-07 | 82 |
presumptive neural plate | 1.70e-07 | 82 |
neurectoderm | 7.19e-07 | 86 |
nervous system | 7.27e-07 | 89 |