FFCP PHASE1:Hg19::chr15:22466523..22466550,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:22466523..22466550,-
|short_description=p1@uc001yui.1
|description=CAGE_peak_1_at_uc001yui.1_5end
|association_with_transcript=-433bp_to_uc001yui.1_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-433bp_to_uc001yui.1_5end | |||
|cluster_id=chr15:22466523..22466550,- | |||
|coexpression_cluster_id=C496 | |||
|description=CAGE_peak_1_at_uc001yui.1_5end | |||
|id=chr15:22466523..22466550,- | |||
|ontology_enrichment_celltype=CL:0000838!4.14e-38!52;CL:0000542!3.77e-37!53;CL:0000051!3.77e-37!53;CL:0000791!5.97e-29!18;CL:0000789!5.97e-29!18;CL:0002420!5.97e-29!18;CL:0002419!5.97e-29!18;CL:0000790!5.97e-29!18;CL:0000084!1.85e-26!25;CL:0000827!1.85e-26!25;CL:0002087!8.31e-20!119;CL:0000738!1.35e-19!140;CL:0000625!8.52e-18!11;CL:0002031!1.33e-15!124;CL:0000037!7.04e-14!172;CL:0000566!7.04e-14!172;CL:0000236!1.48e-12!14;CL:0000988!2.55e-12!182;CL:0002032!4.59e-12!165;CL:0000837!4.59e-12!165;CL:0000624!1.89e-11!6;CL:0000945!3.32e-10!24;CL:0000826!3.32e-10!24 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.76e-38;18!CL:0000789;1.76e-38;18!CL:0002419;1.76e-38;18!CL:0000084;2.08e-30;25!CL:0000542;8.42e-23;53!CL:0000625;3.89e-20;11!CL:0000624;4.42e-18;6!CL:0000236;1.85e-12;13!CL:0000898;6.31e-10;3!CL:0000945;1.41e-09;24!CL:0000623;1.66e-09;3!CL:0000767;1.78e-09;3!CL:0000815;1.36e-07;2!CL:0000792;1.36e-07;2!CL:0002677;1.36e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.08e-42,52;CL:0000542,9.90e-42,53;CL:0000051,9.90e-42,53;CL:0000791,2.19e-38,18;CL:0000789,2.19e-38,18;CL:0002420,2.19e-38,18;CL:0002419,2.19e-38,18;CL:0000790,2.19e-38,18;CL:0000084,2.45e-30,25;CL:0000827,2.45e-30,25;CL:0000625,5.89e-20,11;CL:0000624,2.72e-18,6;CL:0000738,5.21e-18,136;CL:0002087,3.46e-17,115;CL:0002031,3.88e-16,120;CL:0000236,1.24e-14,14;CL:0000037,6.87e-13,168;CL:0002032,7.47e-13,161;CL:0000837,7.47e-13,161;CL:0000988,8.56e-12,177;CL:0000898,4.61e-10,3;CL:0000623,9.76e-10,3;CL:0000825,9.76e-10,3;CL:0000945,1.02e-09,24;CL:0000826,1.02e-09,24;CL:0000767,2.29e-09,3;CL:0000815,1.34e-07,2;CL:0000792,1.34e-07,2;CL:0002677,1.34e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.76e-38;18!CL:0000051;8.42e-23;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.04e-10!115;UBERON:0000178!4.09e-09!15;UBERON:0000179!4.09e-09!15;UBERON:0000463!4.09e-09!15;UBERON:0004177!1.10e-08!7;UBERON:0002370!5.64e-08!4;UBERON:0005058!5.64e-08!4;UBERON:0009113!5.64e-08!4;UBERON:0003295!5.64e-08!4;UBERON:0005562!5.64e-08!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.04e-07;2!UBERON:0005058;1.04e-07;2!UBERON:0009113;1.04e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.03e-12,4;UBERON:0005058,2.03e-12,4;UBERON:0009113,2.03e-12,4;UBERON:0003295,2.03e-12,4;UBERON:0005562,2.03e-12,4;UBERON:0003351,2.82e-08,6;UBERON:0001042,2.39e-07,10;UBERON:0009145,2.39e-07,10;UBERON:0004177,4.35e-07,7;UBERON:0005057,4.35e-07,7 | |||
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| ||
|short_description=p1@uc001yui.1 | |||
}} | }} |
Latest revision as of 00:22, 25 July 2015
Short description: | p1@uc001yui.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc001yui.1_5end |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | -433bp_to_uc001yui.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.08e-42 | 52 |
lymphocyte | 9.90e-42 | 53 |
common lymphoid progenitor | 9.90e-42 | 53 |
mature alpha-beta T cell | 2.19e-38 | 18 |
alpha-beta T cell | 2.19e-38 | 18 |
immature T cell | 2.19e-38 | 18 |
mature T cell | 2.19e-38 | 18 |
immature alpha-beta T cell | 2.19e-38 | 18 |
T cell | 2.45e-30 | 25 |
pro-T cell | 2.45e-30 | 25 |
CD8-positive, alpha-beta T cell | 5.89e-20 | 11 |
CD4-positive, alpha-beta T cell | 2.72e-18 | 6 |
leukocyte | 5.21e-18 | 136 |
nongranular leukocyte | 3.46e-17 | 115 |
hematopoietic lineage restricted progenitor cell | 3.88e-16 | 120 |
B cell | 1.24e-14 | 14 |
hematopoietic stem cell | 6.87e-13 | 168 |
hematopoietic oligopotent progenitor cell | 7.47e-13 | 161 |
hematopoietic multipotent progenitor cell | 7.47e-13 | 161 |
hematopoietic cell | 8.56e-12 | 177 |
naive T cell | 4.61e-10 | 3 |
natural killer cell | 9.76e-10 | 3 |
pro-NK cell | 9.76e-10 | 3 |
lymphocyte of B lineage | 1.02e-09 | 24 |
pro-B cell | 1.02e-09 | 24 |
basophil | 2.29e-09 | 3 |
regulatory T cell | 1.34e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.34e-07 | 2 |
naive regulatory T cell | 1.34e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.03e-12 | 4 |
hemolymphoid system gland | 2.03e-12 | 4 |
thymic region | 2.03e-12 | 4 |
pharyngeal gland | 2.03e-12 | 4 |
thymus primordium | 2.03e-12 | 4 |
pharyngeal epithelium | 2.82e-08 | 6 |
chordate pharynx | 2.39e-07 | 10 |
pharyngeal region of foregut | 2.39e-07 | 10 |
hemopoietic organ | 4.35e-07 | 7 |
immune organ | 4.35e-07 | 7 |