FFCP PHASE1:Hg19::chr4:106473830..106473848,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54848 | |EntrezGene=54848 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25968 | |HGNC=25968 | ||
|TSSclassifier=strong | |||
|UniProt=C9JIB4 | |UniProt=C9JIB4 | ||
|association_with_transcript=51bp_to_ENST00000420470_5end | |association_with_transcript=51bp_to_ENST00000420470_5end | ||
|cluster_id=chr4:106473830..106473848,+ | |||
|coexpression_cluster_id=C2767 | |||
|description=CAGE_peak_2_at_ARHGEF38_5end | |description=CAGE_peak_2_at_ARHGEF38_5end | ||
|id=chr4:106473830..106473848,+ | |id=chr4:106473830..106473848,+ | ||
|ontology_enrichment_celltype=CL:0002322!2.50e-07!5 | |ontology_enrichment_celltype=CL:0002322!2.50e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002178;1.66e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.66e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.70e-10;29!UBERON:0006595;2.45e-08;86!UBERON:0001041;8.81e-08;30!UBERON:0008425;4.33e-07;1!UBERON:0006298;6.99e-07;1!UBERON:0006242;8.72e-07;1 | |||
|ontology_enrichment_disease=DOID:299!3.16e-08!25;DOID:305!4.16e-08!106;DOID:3493!8.85e-07!2 | |ontology_enrichment_disease=DOID:299!3.16e-08!25;DOID:305!4.16e-08!106;DOID:3493!8.85e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:3493;2.22e-12;2!DOID:1325;3.62e-07;7!DOID:3904;3.62e-07;7!DOID:0050619;4.99e-07;1!DOID:1357;4.99e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,2.29e-12,2;DOID:1325,3.01e-07,7;DOID:3904,3.01e-07,7;DOID:0050619,5.13e-07,1;DOID:1357,5.13e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001007!3.65e-16!155;UBERON:0001555!3.65e-16!155;UBERON:0007026!3.65e-16!155;UBERON:0004119!9.45e-16!169;UBERON:0000925!9.45e-16!169;UBERON:0006595!9.45e-16!169;UBERON:0004921!2.01e-15!129;UBERON:0004185!2.01e-15!129;UBERON:0007023!3.26e-12!115;UBERON:0000077!4.07e-11!130;UBERON:0005409!4.07e-09!35;UBERON:0001004!1.10e-08!72;UBERON:0000160!1.18e-08!27;UBERON:0001041!1.95e-08!98;UBERON:0005911!4.13e-08!82;UBERON:0005153!1.65e-07!37;UBERON:0000464!6.45e-07!104;UBERON:0000065!7.12e-07!53;UBERON:0000466!9.81e-07!126 | |ontology_enrichment_uberon=UBERON:0001007!3.65e-16!155;UBERON:0001555!3.65e-16!155;UBERON:0007026!3.65e-16!155;UBERON:0004119!9.45e-16!169;UBERON:0000925!9.45e-16!169;UBERON:0006595!9.45e-16!169;UBERON:0004921!2.01e-15!129;UBERON:0004185!2.01e-15!129;UBERON:0007023!3.26e-12!115;UBERON:0000077!4.07e-11!130;UBERON:0005409!4.07e-09!35;UBERON:0001004!1.10e-08!72;UBERON:0000160!1.18e-08!27;UBERON:0001041!1.95e-08!98;UBERON:0005911!4.13e-08!82;UBERON:0005153!1.65e-07!37;UBERON:0000464!6.45e-07!104;UBERON:0000065!7.12e-07!53;UBERON:0000466!9.81e-07!126 | ||
|ontology_enrichment_uberon_v019=UBERON:0002108;6.69e-17;4!UBERON:0005409;1.14e-13;22!UBERON:0004921;3.83e-12;33!UBERON:0002294;5.10e-12;7!UBERON:0001173;5.10e-12;7!UBERON:0003127;2.23e-11;2!UBERON:0000160;5.69e-10;17!UBERON:0000058;1.75e-08;10!UBERON:0002048;3.37e-08;22!UBERON:0000117;3.37e-08;22!UBERON:0000171;3.37e-08;22!UBERON:0000170;3.37e-08;22!UBERON:0002114;4.40e-08;2!UBERON:0002110;5.83e-08;3!UBERON:0001764;4.99e-07;1!UBERON:0001825;4.99e-07;1!UBERON:0005178;6.58e-07;34!UBERON:0002224;6.58e-07;34!UBERON:0001736;6.99e-07;1!UBERON:0001301;6.99e-07;1!UBERON:0002171;6.99e-07;1!UBERON:0006518;6.99e-07;1!UBERON:0008949;6.99e-07;1!UBERON:0000101;6.99e-07;1!UBERON:0002167;6.99e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,9.74e-17,4;UBERON:0001007,1.01e-15,145;UBERON:0001555,1.01e-15,145;UBERON:0007026,1.01e-15,145;UBERON:0004921,4.41e-15,118;UBERON:0004119,8.98e-14,160;UBERON:0000925,8.98e-14,160;UBERON:0006595,8.98e-14,160;UBERON:0005409,6.28e-12,25;UBERON:0003127,2.61e-11,2;UBERON:0005153,2.48e-10,37;UBERON:0000160,6.04e-10,17;UBERON:0005911,9.64e-10,82;UBERON:0002294,1.96e-09,9;UBERON:0001173,1.96e-09,9;UBERON:0004912,1.96e-09,9;UBERON:0001041,4.33e-09,87;UBERON:0005178,8.21e-09,34;UBERON:0002224,8.21e-09,34;UBERON:0005181,1.59e-08,35;UBERON:0002048,2.93e-08,22;UBERON:0000117,2.93e-08,22;UBERON:0000171,2.93e-08,22;UBERON:0000170,2.93e-08,22;UBERON:0005597,2.93e-08,22;UBERON:0000118,2.93e-08,22;UBERON:0002114,4.56e-08,2;UBERON:0002110,5.25e-08,3;UBERON:0006242,5.25e-08,3;UBERON:0005157,8.23e-08,47;UBERON:0008947,9.29e-08,38;UBERON:0003258,9.29e-08,38;UBERON:0005177,2.51e-07,101;UBERON:0001764,5.13e-07,1;UBERON:0001825,5.13e-07,1;UBERON:0002171,6.43e-07,1;UBERON:0006518,6.43e-07,1;UBERON:0008949,6.43e-07,1;UBERON:0000101,6.43e-07,1;UBERON:0002167,6.43e-07,1;UBERON:0001736,6.80e-07,1;UBERON:0006298,6.80e-07,1;UBERON:0001301,7.19e-07,1;UBERON:0000915,7.75e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17881167947941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.3953988042419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.77976734060731,0,0,0,0,0,0,0.308061348417659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,0,0.597743964753209,0.552567831062295,4.03092396566842,0,0,0,0,1.79021174675609,0,0,0,0,0,0,0,0.520855522170466,11.5447199994978,0.724999575434793,0,1.5255219017566,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,1.47698645169619,0.652931232636591,0.282706142867882,0,0,0.973033209536731,1.83309043480088,0,0,0,0,0,0,0,0.19566461893209,0,0,2.41981432097328,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,4.19344003780872,0,0,0,0,0,0,0.225980740780532,0,0,0,1.75996244461323,0,3.84215390530835,0,8.35724419493815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,3.07342258466873,1.20645552710496,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,2.56289790162467,16.5064520354649,4.97086866416635,0,0,0,0,0,0,0,0,8.00975890876195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0,0,0,0,0,0.150420656698515,0,1.56302802246618,0,0,1.33070477595341,0,0,0,0,0,0.548257766857182,0.496211178389294,0,0.255524855279191,0,0,0.606965604236632,0.682986574053893,0.0887023701626388,0,0,0,0,0,0.444925607568277,3.29670989972159,0,0,0,0,0,0,0,0,0,0,0,0,0,3.8720462293825,0,0,0,0,0,0,0,7.06681682029749,10.7287773984397,0,0,0,0,0.233939463462106,0,0,1.92008339466232,0,2.56636834063345,1.23478652972711,1.31135736302374,2.35158648180761,0,2.59244201811789,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,4.58729283404541,0,0,0,0,7.93540260773101,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0.267964130156178,0,0,0.852935927603924,2.3806443146374,0.0645889098360061,0,0,1.78212043178862,0.202117188958219,0.217716747896961,0,0.80822463617505,2.51027718874367,1.33064142618405,0,0,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17881167947941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.3953988042419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.77976734060731,0,0,0,0,0,0,0.308061348417659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,0,0.597743964753209,0.552567831062295,4.03092396566842,0,0,0,0,1.79021174675609,0,0,0,0,0,0,0,0.520855522170466,11.5447199994978,0.724999575434793,0,1.5255219017566,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0,0,0,0,1.47698645169619,0.652931232636591,0.282706142867882,0,0,0.973033209536731,1.83309043480088,0,0,0,0,0,0,0,0.19566461893209,0,0,2.41981432097328,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,4.19344003780872,0,0,0,0,0,0,0.225980740780532,0,0,0,1.75996244461323,0,3.84215390530835,0,8.35724419493815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,3.07342258466873,1.20645552710496,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,2.56289790162467,16.5064520354649,4.97086866416635,0,0,0,0,0,0,0,0,8.00975890876195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0,0,0,0,0,0.150420656698515,0,1.56302802246618,0,0,1.33070477595341,0,0,0,0,0,0.548257766857182,0.496211178389294,0,0.255524855279191,0,0,0.606965604236632,0.682986574053893,0.0887023701626388,0,0,0,0,0,0.444925607568277,3.29670989972159,0,0,0,0,0,0,0,0,0,0,0,0,0,3.8720462293825,0,0,0,0,0,0,0,7.06681682029749,10.7287773984397,0,0,0,0,0.233939463462106,0,0,1.92008339466232,0,2.56636834063345,1.23478652972711,1.31135736302374,2.35158648180761,0,2.59244201811789,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,4.58729283404541,0,0,0,0,7.93540260773101,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0.267964130156178,0,0,0.852935927603924,2.3806443146374,0.0645889098360061,0,0,1.78212043178862,0.202117188958219,0.217716747896961,0,0.80822463617505,2.51027718874367,1.33064142618405,0,0,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p2@ARHGEF38 | |short_description=p2@ARHGEF38 | ||
}} | }} |
Latest revision as of 06:39, 20 September 2015
Short description: | p2@ARHGEF38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ARHGEF38_5end |
Coexpression cluster: | C2767_lung_breast_maxillary_pituitary_signet_temporal_gastric |
Association with transcript: | 51bp_to_ENST00000420470_5end |
EntrezGene: | ARHGEF38 |
HGNC: | 25968 |
UniProt: | C9JIB4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.66e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 2.29e-12 | 2 |
bronchus cancer | 3.01e-07 | 7 |
bronchogenic carcinoma | 3.01e-07 | 7 |
paranasal sinus cancer | 5.13e-07 | 1 |
maxillary sinus cancer | 5.13e-07 | 1 |