FFCP PHASE1:Hg19::chr8:145065521..145065547,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2907 | |EntrezGene=2907 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4589 | |HGNC=4589 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=59bp_to_ENST00000531992_5end | |association_with_transcript=59bp_to_ENST00000531992_5end | ||
|cluster_id=chr8:145065521..145065547,+ | |||
|coexpression_cluster_id=C2920 | |||
|description=CAGE_peak_9_at_GRINA_5end | |description=CAGE_peak_9_at_GRINA_5end | ||
|id=chr8:145065521..145065547,+ | |id=chr8:145065521..145065547,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.75e-12!42;CL:0000766!4.92e-11!76;CL:0000860!6.81e-11!45;CL:0002194!6.68e-10!63;CL:0000576!6.68e-10!63;CL:0000040!6.68e-10!63;CL:0000559!6.68e-10!63;CL:0000839!9.36e-10!70;CL:0000557!2.02e-09!71;CL:0002009!2.13e-09!65 | |ontology_enrichment_celltype=CL:0002057!1.75e-12!42;CL:0000766!4.92e-11!76;CL:0000860!6.81e-11!45;CL:0002194!6.68e-10!63;CL:0000576!6.68e-10!63;CL:0000040!6.68e-10!63;CL:0000559!6.68e-10!63;CL:0000839!9.36e-10!70;CL:0000557!2.02e-09!71;CL:0002009!2.13e-09!65 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.75e-16;33!CL:0002057;1.75e-16;33!CL:0000473;2.93e-13;39!CL:0000234;2.93e-13;39!CL:0000576;6.03e-09;48!CL:0000766;4.33e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.08e-13,42;CL:0002057,3.08e-13,42;CL:0000766,3.09e-13,72;CL:0000473,8.03e-13,48;CL:0000234,8.03e-13,48;CL:0000557,6.35e-12,67;CL:0000839,8.23e-12,66;CL:0002194,1.43e-11,59;CL:0000576,1.43e-11,59;CL:0000040,1.43e-11,59;CL:0000559,1.43e-11,59;CL:0002009,3.00e-11,61 | |||
|ontology_enrichment_development_v019=CL:0002057;6.27e-10;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!6.02e-15!659;UBERON:0000467!2.64e-14!625;UBERON:0000480!3.94e-14!626;UBERON:0000922!8.87e-14!612;UBERON:0002050!2.66e-13!605;UBERON:0005423!2.66e-13!605;UBERON:0007023!3.02e-13!115;UBERON:0000923!3.94e-13!604;UBERON:0005291!3.94e-13!604;UBERON:0006598!3.94e-13!604;UBERON:0002532!3.94e-13!604;UBERON:0000062!1.01e-10!511;UBERON:0002405!1.55e-08!115;UBERON:0002371!6.83e-08!80;UBERON:0004765!8.84e-08!101;UBERON:0001434!8.84e-08!101;UBERON:0001474!2.50e-07!86;UBERON:0000926!6.04e-07!448;UBERON:0004120!6.04e-07!448;UBERON:0006603!6.04e-07!448 | |ontology_enrichment_uberon=UBERON:0000468!6.02e-15!659;UBERON:0000467!2.64e-14!625;UBERON:0000480!3.94e-14!626;UBERON:0000922!8.87e-14!612;UBERON:0002050!2.66e-13!605;UBERON:0005423!2.66e-13!605;UBERON:0007023!3.02e-13!115;UBERON:0000923!3.94e-13!604;UBERON:0005291!3.94e-13!604;UBERON:0006598!3.94e-13!604;UBERON:0002532!3.94e-13!604;UBERON:0000062!1.01e-10!511;UBERON:0002405!1.55e-08!115;UBERON:0002371!6.83e-08!80;UBERON:0004765!8.84e-08!101;UBERON:0001434!8.84e-08!101;UBERON:0001474!2.50e-07!86;UBERON:0000926!6.04e-07!448;UBERON:0004120!6.04e-07!448;UBERON:0006603!6.04e-07!448 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.70e-10,114;UBERON:0002371,1.05e-09,76;UBERON:0001434,4.06e-09,100;UBERON:0002405,4.22e-09,93;UBERON:0001474,5.95e-09,82;UBERON:0004765,8.33e-09,90;UBERON:0002050,8.52e-08,564;UBERON:0000926,9.07e-08,315;UBERON:0004120,9.07e-08,315;UBERON:0006603,9.07e-08,315;UBERON:0000923,1.06e-07,560;UBERON:0010316,1.06e-07,560;UBERON:0005291,1.06e-07,560;UBERON:0006598,1.06e-07,560;UBERON:0010317,1.06e-07,560;UBERON:0002532,1.06e-07,560;UBERON:0002193,1.75e-07,108;UBERON:0005423,2.36e-07,581;UBERON:0002390,3.73e-07,98;UBERON:0003061,3.73e-07,98;UBERON:0000922,4.01e-07,592;UBERON:0003081,6.10e-07,203 | |||
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| ||
|short_description=p9@GRINA | |short_description=p9@GRINA | ||
}} | }} |
Latest revision as of 00:17, 17 September 2015
Short description: | p9@GRINA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_GRINA_5end |
Coexpression cluster: | C2920_liver_Mesenchymal_Neutrophils_Osteoblast_Melanocyte_testis_CD14 |
Association with transcript: | 59bp_to_ENST00000531992_5end |
EntrezGene: | GRINA |
HGNC: | 4589 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.08e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.08e-13 | 42 |
myeloid leukocyte | 3.09e-13 | 72 |
defensive cell | 8.03e-13 | 48 |
phagocyte | 8.03e-13 | 48 |
granulocyte monocyte progenitor cell | 6.35e-12 | 67 |
myeloid lineage restricted progenitor cell | 8.23e-12 | 66 |
monopoietic cell | 1.43e-11 | 59 |
monocyte | 1.43e-11 | 59 |
monoblast | 1.43e-11 | 59 |
promonocyte | 1.43e-11 | 59 |
macrophage dendritic cell progenitor | 3.00e-11 | 61 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.70e-10 | 114 |
bone marrow | 1.05e-09 | 76 |
skeletal system | 4.06e-09 | 100 |
immune system | 4.22e-09 | 93 |
bone element | 5.95e-09 | 82 |
skeletal element | 8.33e-09 | 90 |
embryonic structure | 8.52e-08 | 564 |
mesoderm | 9.07e-08 | 315 |
mesoderm-derived structure | 9.07e-08 | 315 |
presumptive mesoderm | 9.07e-08 | 315 |
germ layer | 1.06e-07 | 560 |
germ layer / neural crest | 1.06e-07 | 560 |
embryonic tissue | 1.06e-07 | 560 |
presumptive structure | 1.06e-07 | 560 |
germ layer / neural crest derived structure | 1.06e-07 | 560 |
epiblast (generic) | 1.06e-07 | 560 |
hemolymphoid system | 1.75e-07 | 108 |
developing anatomical structure | 2.36e-07 | 581 |
hematopoietic system | 3.73e-07 | 98 |
blood island | 3.73e-07 | 98 |
embryo | 4.01e-07 | 592 |
lateral plate mesoderm | 6.10e-07 | 203 |