FFCP PHASE1:Hg19::chr17:40950797..40950816,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:40950797..40950816,+
|short_description=p1@CNTD1
|description=CAGE_peak_1_at_CNTD1_5end
|association_with_transcript=-37bp_to_ENST00000315066,NM_173478,uc...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=124817 | |EntrezGene=124817 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26847 | |HGNC=26847 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N815 | |UniProt=Q8N815 | ||
|association_with_transcript=-37bp_to_ENST00000315066,NM_173478,uc002ibm.3_5end | |||
|cluster_id=chr17:40950797..40950816,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_CNTD1_5end | |||
|id=chr17:40950797..40950816,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002564;1.21e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,1.12e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.20e-10;10!UBERON:0005564;6.20e-10;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.93e-28!57;UBERON:0005068!4.93e-28!57;UBERON:0006241!4.93e-28!57;UBERON:0007135!4.93e-28!57;UBERON:0002020!1.32e-24!34;UBERON:0003528!1.32e-24!34;UBERON:0001893!1.97e-24!34;UBERON:0007023!2.04e-23!115;UBERON:0002791!3.13e-23!33;UBERON:0001017!4.61e-23!82;UBERON:0002780!1.82e-22!41;UBERON:0001890!1.82e-22!41;UBERON:0006240!1.82e-22!41;UBERON:0005743!2.18e-22!86;UBERON:0001869!3.55e-22!32;UBERON:0002616!5.86e-22!59;UBERON:0003080!1.06e-21!42;UBERON:0000955!1.79e-21!69;UBERON:0006238!1.79e-21!69;UBERON:0003075!2.34e-21!86;UBERON:0007284!2.34e-21!86;UBERON:0002346!8.51e-21!90;UBERON:0000073!8.09e-20!94;UBERON:0001016!8.09e-20!94;UBERON:0002619!4.88e-19!22;UBERON:0001950!1.11e-16!20;UBERON:0000956!4.43e-16!25;UBERON:0000203!4.43e-16!25;UBERON:0003056!4.96e-14!61;UBERON:0000153!4.97e-12!129;UBERON:0007811!4.97e-12!129;UBERON:0000033!6.83e-12!123;UBERON:0004121!2.40e-11!169;UBERON:0000924!2.73e-11!173;UBERON:0006601!2.73e-11!173;UBERON:0002308!2.41e-10!9;UBERON:0000125!2.41e-10!9;UBERON:0002420!7.21e-10!9;UBERON:0007245!7.21e-10!9;UBERON:0010009!7.21e-10!9;UBERON:0010011!7.21e-10!9;UBERON:0000454!7.21e-10!9;UBERON:0000200!5.45e-09!6;UBERON:0001871!4.43e-08!7;UBERON:0009663!9.70e-08!7;UBERON:0000064!1.51e-07!219;UBERON:0000483!1.55e-07!309;UBERON:0003076!1.67e-07!15;UBERON:0003057!1.67e-07!15;UBERON:0000349!1.77e-07!5;UBERON:0000119!2.78e-07!312;UBERON:0000475!3.25e-07!365;UBERON:0000025!4.54e-07!194;UBERON:0000369!5.33e-07!4;UBERON:0002435!5.33e-07!4;UBERON:0000204!5.33e-07!4;UBERON:0010082!5.33e-07!4;UBERON:0002298!9.44e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000349;1.62e-18;5!UBERON:0001876;2.59e-12;2!UBERON:0001897;2.59e-12;2!UBERON:0001954;2.59e-12;2!UBERON:0003022;2.59e-12;2!UBERON:0002421;2.59e-12;2!UBERON:0010225;2.59e-12;2!UBERON:0002600;2.59e-12;2!UBERON:0000473;3.54e-12;8!UBERON:0002619;2.94e-09;22!UBERON:0003135;4.08e-09;11!UBERON:0002242;1.21e-08;3!UBERON:0000956;2.93e-08;25!UBERON:0000203;2.93e-08;25!UBERON:0002780;1.60e-07;41!UBERON:0001890;1.60e-07;41!UBERON:0002784;8.61e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000349,1.04e-18,5;UBERON:0001876,1.85e-12,2;UBERON:0001954,2.07e-12,2;UBERON:0003022,2.07e-12,2;UBERON:0002421,2.07e-12,2;UBERON:0002600,2.07e-12,2;UBERON:0001897,3.24e-12,2;UBERON:0010225,3.24e-12,2;UBERON:0000473,3.54e-12,8;UBERON:0002619,2.78e-09,22;UBERON:0003135,4.08e-09,11;UBERON:0002780,9.23e-09,41;UBERON:0001890,9.23e-09,41;UBERON:0003080,9.23e-09,41;UBERON:0006240,9.23e-09,41;UBERON:0002242,1.12e-08,3;UBERON:0003068,1.12e-08,3;UBERON:0002328,1.12e-08,3;UBERON:0004880,1.12e-08,3;UBERON:0000956,2.79e-08,25;UBERON:0000203,2.79e-08,25;UBERON:0007023,5.91e-07,114;UBERON:0000073,6.94e-07,53;UBERON:0002616,6.94e-07,53;UBERON:0002784,9.63e-07,4 | |||
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| ||
|short_description=p1@CNTD1 | |||
}} | }} |
Latest revision as of 16:13, 24 September 2015
Short description: | p1@CNTD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CNTD1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -37bp_to_ENST00000315066, NM_173478, uc002ibm.3_5end |
EntrezGene: | CNTD1 |
HGNC: | 26847 |
UniProt: | Q8N815 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 1.12e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
limbic system | 1.04e-18 | 5 |
amygdala | 1.85e-12 | 2 |
Ammon's horn | 2.07e-12 | 2 |
lobe parts of cerebral cortex | 2.07e-12 | 2 |
hippocampal formation | 2.07e-12 | 2 |
limbic lobe | 2.07e-12 | 2 |
dorsal plus ventral thalamus | 3.24e-12 | 2 |
thalamic complex | 3.24e-12 | 2 |
testis | 3.54e-12 | 8 |
regional part of cerebral cortex | 2.78e-09 | 22 |
male reproductive organ | 4.08e-09 | 11 |
regional part of forebrain | 9.23e-09 | 41 |
forebrain | 9.23e-09 | 41 |
anterior neural tube | 9.23e-09 | 41 |
future forebrain | 9.23e-09 | 41 |
nucleus pulposus | 1.12e-08 | 3 |
axial mesoderm | 1.12e-08 | 3 |
notochord | 1.12e-08 | 3 |
chordamesoderm | 1.12e-08 | 3 |
cerebral cortex | 2.79e-08 | 25 |
pallium | 2.79e-08 | 25 |
adult organism | 5.91e-07 | 114 |
regional part of nervous system | 6.94e-07 | 53 |
regional part of brain | 6.94e-07 | 53 |
regional part of diencephalon | 9.63e-07 | 4 |