FFCP PHASE1:Hg19::chr17:62502968..62503006,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:62502968..62503006,-
|short_description=p2@DDX5
|description=CAGE_peak_2_at_DDX5_5end
|association_with_transcript=-484bp_to_ENST00000540698,NM_004396,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1655 | |EntrezGene=1655 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2746 | |HGNC=2746 | ||
|TSSclassifier=strong | |||
|UniProt=P17844 | |UniProt=P17844 | ||
|association_with_transcript=-484bp_to_ENST00000540698,NM_004396,uc002jej.2,uc002jek.2,uc010wqa.1_5end | |||
|cluster_id=chr17:62502968..62503006,- | |||
|coexpression_cluster_id=C509 | |||
|description=CAGE_peak_2_at_DDX5_5end | |||
|id=chr17:62502968..62503006,- | |||
|ontology_enrichment_celltype=CL:0000738!4.14e-33!140;CL:0000037!2.97e-31!172;CL:0000566!2.97e-31!172;CL:0000766!1.93e-29!76;CL:0002032!3.18e-29!165;CL:0000837!3.18e-29!165;CL:0002031!2.24e-26!124;CL:0000763!2.33e-26!112;CL:0000049!2.33e-26!112;CL:0000557!5.37e-26!71;CL:0000988!1.11e-25!182;CL:0002057!3.90e-25!42;CL:0002087!3.96e-24!119;CL:0000839!9.71e-24!70;CL:0002009!7.39e-23!65;CL:0000860!4.50e-22!45;CL:0002194!7.01e-22!63;CL:0000576!7.01e-22!63;CL:0000040!7.01e-22!63;CL:0000559!7.01e-22!63;CL:0000791!9.69e-07!18;CL:0000789!9.69e-07!18;CL:0002420!9.69e-07!18;CL:0002419!9.69e-07!18;CL:0000790!9.69e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.17e-19;33!CL:0002057;5.17e-19;33!CL:0000473;1.22e-16;39!CL:0000234;1.22e-16;39!CL:0000576;4.16e-16;48!CL:0000766;6.39e-15;69!CL:0000763;4.41e-09;100!CL:0002087;2.99e-08;104!CL:0000738;3.78e-08;136!CL:0000791;8.64e-07;18!CL:0000789;8.64e-07;18!CL:0002419;8.64e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.13e-35,136;CL:0000037,2.09e-33,168;CL:0000766,4.21e-33,72;CL:0002032,2.44e-31,161;CL:0000837,2.44e-31,161;CL:0000557,1.62e-29,67;CL:0000763,6.39e-29,108;CL:0000049,6.39e-29,108;CL:0002031,9.14e-29,120;CL:0000988,3.50e-28,177;CL:0000839,4.51e-27,66;CL:0002087,1.92e-26,115;CL:0002009,2.76e-26,61;CL:0000473,5.84e-26,48;CL:0000234,5.84e-26,48;CL:0002194,2.79e-25,59;CL:0000576,2.79e-25,59;CL:0000040,2.79e-25,59;CL:0000559,2.79e-25,59;CL:0000860,3.89e-25,42;CL:0002057,3.89e-25,42;CL:0000134,5.64e-07,354;CL:0000791,9.69e-07,18;CL:0000789,9.69e-07,18;CL:0002420,9.69e-07,18;CL:0002419,9.69e-07,18;CL:0000790,9.69e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;2.55e-18;42!CL:0000049;3.74e-08;108!CL:0000790;8.64e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.37e-23!102;UBERON:0003061!2.37e-23!102;UBERON:0002193!1.24e-22!112;UBERON:0002371!2.27e-22!80;UBERON:0001474!8.02e-22!86;UBERON:0002405!9.25e-18!115;UBERON:0004765!1.40e-16!101;UBERON:0001434!1.40e-16!101;UBERON:0007023!3.64e-10!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.72e-26,98;UBERON:0003061,7.72e-26,98;UBERON:0002371,3.01e-25,76;UBERON:0002193,6.37e-25,108;UBERON:0001474,1.66e-24,82;UBERON:0002405,5.91e-24,93;UBERON:0004765,7.32e-21,90;UBERON:0001434,9.31e-18,100;UBERON:0007023,3.26e-10,114 | |||
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| ||
|short_description=p2@DDX5 | |||
}} | }} |
Latest revision as of 19:51, 16 September 2015
Short description: | p2@DDX5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_DDX5_5end |
Coexpression cluster: | C509_Neutrophils_Eosinophils_CD14_Whole_CD34_CD19_Peripheral |
Association with transcript: | -484bp_to_ENST00000540698, NM_004396, uc002jej.2, uc002jek.2, uc010wqa.1_5end |
EntrezGene: | DDX5 |
HGNC: | 2746 |
UniProt: | P17844 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.13e-35 | 136 |
hematopoietic stem cell | 2.09e-33 | 168 |
myeloid leukocyte | 4.21e-33 | 72 |
hematopoietic oligopotent progenitor cell | 2.44e-31 | 161 |
hematopoietic multipotent progenitor cell | 2.44e-31 | 161 |
granulocyte monocyte progenitor cell | 1.62e-29 | 67 |
myeloid cell | 6.39e-29 | 108 |
common myeloid progenitor | 6.39e-29 | 108 |
hematopoietic lineage restricted progenitor cell | 9.14e-29 | 120 |
hematopoietic cell | 3.50e-28 | 177 |
myeloid lineage restricted progenitor cell | 4.51e-27 | 66 |
nongranular leukocyte | 1.92e-26 | 115 |
macrophage dendritic cell progenitor | 2.76e-26 | 61 |
defensive cell | 5.84e-26 | 48 |
phagocyte | 5.84e-26 | 48 |
monopoietic cell | 2.79e-25 | 59 |
monocyte | 2.79e-25 | 59 |
monoblast | 2.79e-25 | 59 |
promonocyte | 2.79e-25 | 59 |
classical monocyte | 3.89e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.89e-25 | 42 |
mesenchymal cell | 5.64e-07 | 354 |
mature alpha-beta T cell | 9.69e-07 | 18 |
alpha-beta T cell | 9.69e-07 | 18 |
immature T cell | 9.69e-07 | 18 |
mature T cell | 9.69e-07 | 18 |
immature alpha-beta T cell | 9.69e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.72e-26 | 98 |
blood island | 7.72e-26 | 98 |
bone marrow | 3.01e-25 | 76 |
hemolymphoid system | 6.37e-25 | 108 |
bone element | 1.66e-24 | 82 |
immune system | 5.91e-24 | 93 |
skeletal element | 7.32e-21 | 90 |
skeletal system | 9.31e-18 | 100 |
adult organism | 3.26e-10 | 114 |