FFCP PHASE1:Hg19::chr22:46546390..46546401,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5465 | |EntrezGene=5465 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9232 | |HGNC=9232 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-22bp_to_ENST00000440343_5end | |association_with_transcript=-22bp_to_ENST00000440343_5end | ||
|cluster_id=chr22:46546390..46546401,+ | |||
|description=CAGE_peak_3_at_PPARA_5end | |description=CAGE_peak_3_at_PPARA_5end | ||
|id=chr22:46546390..46546401,+ | |id=chr22:46546390..46546401,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002032;4.48e-13;1!CL:0000557;4.48e-13;1!CL:0000235;9.25e-09;6!CL:0002363;3.59e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,1.26e-08,6;CL:0002363,5.28e-07,2;CL:0000008,5.28e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0010226;4.48e-13;1!UBERON:0004140;4.48e-13;1!CL:0000008;3.59e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:178;4.48e-13;1!DOID:326;4.48e-13;1!DOID:3978;4.48e-13;1!DOID:3394;4.48e-13;1!DOID:5844;4.48e-13;1!DOID:114;3.59e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:178,5.38e-13,1;DOID:326,5.38e-13,1;DOID:3978,5.38e-13,1;DOID:3394,5.38e-13,1;DOID:5844,5.38e-13,1;DOID:114,3.93e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.82e-14!115 | |ontology_enrichment_uberon=UBERON:0007023!3.82e-14!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0002084;4.48e-13;1!UBERON:0000996;4.48e-13;1!UBERON:0002426;4.48e-13;1!UBERON:0003831;4.48e-13;1!UBERON:0003898;4.48e-13;1!UBERON:0004830;4.48e-13;1!UBERON:0002082;4.48e-13;1!UBERON:0003830;4.48e-13;1!UBERON:0005175;4.48e-13;1!UBERON:0001774;4.48e-13;1!UBERON:0001103;4.48e-13;1!UBERON:0003127;3.59e-07;2!UBERON:0005090;3.59e-07;2!UBERON:0001630;3.59e-07;2!UBERON:0003566;3.59e-07;2!UBERON:0001777;3.59e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002426,2.06e-13,1;UBERON:0003831,2.06e-13,1;UBERON:0003898,2.06e-13,1;UBERON:0004830,2.06e-13,1;UBERON:0003830,2.06e-13,1;UBERON:0005175,2.06e-13,1;UBERON:0001774,2.06e-13,1;UBERON:0001103,2.06e-13,1;UBERON:0010084,2.06e-13,1;UBERON:0000996,2.62e-13,1;UBERON:0002084,3.33e-13,1;UBERON:0002082,3.33e-13,1;UBERON:0010226,3.33e-13,1;UBERON:0005090,2.43e-07,2;UBERON:0001630,2.43e-07,2;UBERON:0003127,2.91e-07,2;UBERON:0003566,5.28e-07,2;UBERON:0001777,5.28e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.229240217243854,0.0821005894499457,0.0787107813136792,0,0,0.309632246632152,0,0,0,0.0774672005803016,0.142169232487422,0.293600439334847,0,0,0.217010870715852,0,0,0.257575567634187,0,0,0,0,0,0.309706370895104,0.28769239232215,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0.285012743741249,0.39783335439818,0.182664153764634,0,0,0,0,0.400395987036012,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0.276350017785848,0.289803085735052,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.289648807765598,0,0.670700859703636,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0.476981248610684,0.571994910780128,0.371457501329565,0,0,0.347140501607594,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0,0,0,0.560677600142307,0,0,0,0.134710672069688,0.326923806226917,0,0.576175924479999,0,0.312160076830321,0,0,0,0,0,0,0.61417158655884,0,1.18800285728205,0.494533858557114,0,0,0.168336113954066,0,0,0,0,0.300476117813194,0,0,0,0.211931901159562,0,0.103052529238439,0,0,0,0.0974370051611986,0,0,0.161646056818812,0.355009592516614,0,0,0,0,0.286804595389004,0,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,0.643240938192885,0,0,0,0,0,0,0.220587945464788,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0,0,0,0,0,0,1.03993478527958,0,0,0,0,1.38895653772983,0.380508304469197,0,0,0,0.468008530278475,0.148631162288728,0.93733833986777,0,0.141775097242386,0,0,0,0,0.176096868026452,0,0.144119953416961,0.12624243342638,0.317489471460845,0,1.17217447210047,0,0.411309970813294,0.600686115687835,0.857479297891735,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0.285955987316295,0,0,0,0.710783897485092,0,0,0,0,1.2162378064119,1.00451418286425,0,0,0,0,0.289562613335158,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0.415941723061614,0.535286966391485,0,0.234282829985426,0.300946099727719,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0.362578348774867,0.200506470303285,0,0.114814448164607,0.546273504020151,0,0.451199612907412,0.0770153371044148,0,0,0.316654886678627,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0.219259876645935,0,0,0.328014645699706,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0,0.15350367472613,0,0,0.435050081742686,0,0.0890320356467374,0,0,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0.190630193923825,0,0.42793898803392,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0.0982490410131212,0,0,0,0.329294892959902,0.379473173765715,0.349934720244983,0.288666338176536,0,0,0.0941438007767792,0,1.68471475667626,0,0,0,0.764637207142375,0,0,0,0,0,0,0,0.962479855263359,0.245040215981032,0,0.144269212976445,0,0.318852545457645,0,0.383010740264733,0.211673582723883,0,0.280797178113459,0,0,5.01268954180134,0.169291777801603,0.1605880751037,0,0,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0.37428108081644,0.293016358543788,0,0,0,0.47748896947538,0,0,0,0.281338832821026,0.333926115068718,0,0,0.597743964753209,0,0,0.306806047506464,0.123084805461069,0.311039587661807,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0.260427761085233,0,0,0.1137934482855,0,0.236387681767936,0,0.291604613383254,0,0,0,0,0.221158519862449,0.295547618953547,0.438770794307945,0.21787692703798,0.139423744278603,0.153900517007594,0.227884111694002,0.23056390438806,0.269272933229316,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0.424059214301822,0,0,0.265372693510018,0,0,0.123563938946503,0.104421949505455,0.404406797884062,1.60515529459758,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.451961481561065,0.137041924646751,0.19871461170299,0.253243183823515,0,0,0,0,0,0.343609788497747,0.171594997861965,0,0,0.235694034616795,0.135904206073614,0.104602846312333,0.101998217636322,0,0.600420288709789,0.684526894459965,1.27746588066972,0,0,0.279282401272254,0.229160424011684,0.717873024576814,1.19807400299395,0.429226048136571,0,1.2764859772478,0.360299883542404,0,0.157566364614447,0.164831716762333,0.0674035438541849,0,0,0,0,0,0.137539436597234,0,0,0,0.242998226632099,0.335434687599266,0.157611414598396,0.262272940674991,0,0,0,0,1.32418394073086,0,0,0,0,1.19730191562487,0.082092520749339,0.511164065356265,0,0.293104467356165,0,0.517131825446202,0.39669780522807,0,0,0.106787412567695,0,0.414239055347196,0,0.197611631897944,0.121792598380896,0,0,0,0,0.655745261419609,0.157054096250234,0,0.122026264901963,0.250381861413,0.573409195690071,0.554645257684261,0.434674820589684,0,0.124980407962107,0,0.285465333544967,0,0,0.144921028610825,0,0,0,0,0,0,0.228840068396924,0.151230923763239,0.15543720058278,0,0.159296767163702,0,0,0.414706207840855,0,0,0.150257608997218,0.380805212168795,0,0,0.322231671127465,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0.414775308455192,0.389720617678777,0,0,0,0,0.211312123358627,0,0.106691729694141,0,0,0,0.279759015438889,0,0.127894371303652,0,0,0,0,0.212574920101683,0.123935764259002,0.558644917973244,0,0.157723490002507,0,0,0,0.256916900385838,0,0.638535436228605,0,0,0.138314504928436,0.968853873791107,0,0.196295437002051,0,0,0,0,0,0,0.376051641746286,0.20170506870352,0.781514011233092,0.523813388962845,0,0.147856086217045,0.270150338473579,0,0.826747186004736,0.19024743058172,0,0.548257766857182,0.496211178389294,0,0,0,0.336283722218824,0,0,0,0,0.514464028312255,0.0679697329768317,0.197318320688547,0,0.111231401892069,0.39246546425257,0,0,0,0,0,0.78624198594322,0.158013611732727,0,0,0.801711364730253,0,0,0,0,0.236664001461131,0.0852134047591577,0,0,0,0,0,0.098150233615243,0,0.647428837187895,0.205325613712494,1.1598144313382,0,0,0,0,0,0.109940516745429,0.301925687133347,0,0.874238242015829,0,0.245148321753905,0,0.588925401344836,0.297046400327086,0,0,0.0939839179798536,0.193373663920732,0.199882311849858,0,0.352894871715692,0,0,0,0.430018749454354,0,0.203974470572744,0,0,0,0,0,0,0,0.126698501011437,0.101988829741982,0,0,0,0.530450887527676,0,0,0.930896962757057,0.213233981900981,0,0.0645889098360061,0.31037357147929,0.112131862580613,0.25458863311266,0,0,0.684466602170562,0.202056159043763,0.286888821570705,1.33064142618405,0.0814032686109745,0,0,0.449126010532934,0,0.488965776731466,0.406896178315738,1.33151354837103,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.229240217243854,0.0821005894499457,0.0787107813136792,0,0,0.309632246632152,0,0,0,0.0774672005803016,0.142169232487422,0.293600439334847,0,0,0.217010870715852,0,0,0.257575567634187,0,0,0,0,0,0.309706370895104,0.28769239232215,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0.285012743741249,0.39783335439818,0.182664153764634,0,0,0,0,0.400395987036012,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0.276350017785848,0.289803085735052,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.289648807765598,0,0.670700859703636,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0.476981248610684,0.571994910780128,0.371457501329565,0,0,0.347140501607594,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0,0,0,0.560677600142307,0,0,0,0.134710672069688,0.326923806226917,0,0.576175924479999,0,0.312160076830321,0,0,0,0,0,0,0.61417158655884,0,1.18800285728205,0.494533858557114,0,0,0.168336113954066,0,0,0,0,0.300476117813194,0,0,0,0.211931901159562,0,0.103052529238439,0,0,0,0.0974370051611986,0,0,0.161646056818812,0.355009592516614,0,0,0,0,0.286804595389004,0,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,0.643240938192885,0,0,0,0,0,0,0.220587945464788,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0,0,0,0,0,0,1.03993478527958,0,0,0,0,1.38895653772983,0.380508304469197,0,0,0,0.468008530278475,0.148631162288728,0.93733833986777,0,0.141775097242386,0,0,0,0,0.176096868026452,0,0.144119953416961,0.12624243342638,0.317489471460845,0,1.17217447210047,0,0.411309970813294,0.600686115687835,0.857479297891735,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0.285955987316295,0,0,0,0.710783897485092,0,0,0,0,1.2162378064119,1.00451418286425,0,0,0,0,0.289562613335158,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0.415941723061614,0.535286966391485,0,0.234282829985426,0.300946099727719,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0.362578348774867,0.200506470303285,0,0.114814448164607,0.546273504020151,0,0.451199612907412,0.0770153371044148,0,0,0.316654886678627,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0.219259876645935,0,0,0.328014645699706,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0,0.15350367472613,0,0,0.435050081742686,0,0.0890320356467374,0,0,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0.190630193923825,0,0.42793898803392,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0.0982490410131212,0,0,0,0.329294892959902,0.379473173765715,0.349934720244983,0.288666338176536,0,0,0.0941438007767792,0,1.68471475667626,0,0,0,0.764637207142375,0,0,0,0,0,0,0,0.962479855263359,0.245040215981032,0,0.144269212976445,0,0.318852545457645,0,0.383010740264733,0.211673582723883,0,0.280797178113459,0,0,5.01268954180134,0.169291777801603,0.1605880751037,0,0,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0.37428108081644,0.293016358543788,0,0,0,0.47748896947538,0,0,0,0.281338832821026,0.333926115068718,0,0,0.597743964753209,0,0,0.306806047506464,0.123084805461069,0.311039587661807,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0.260427761085233,0,0,0.1137934482855,0,0.236387681767936,0,0.291604613383254,0,0,0,0,0.221158519862449,0.295547618953547,0.438770794307945,0.21787692703798,0.139423744278603,0.153900517007594,0.227884111694002,0.23056390438806,0.269272933229316,0.217294743844016,0,0,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0.424059214301822,0,0,0.265372693510018,0,0,0.123563938946503,0.104421949505455,0.404406797884062,1.60515529459758,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.451961481561065,0.137041924646751,0.19871461170299,0.253243183823515,0,0,0,0,0,0.343609788497747,0.171594997861965,0,0,0.235694034616795,0.135904206073614,0.104602846312333,0.101998217636322,0,0.600420288709789,0.684526894459965,1.27746588066972,0,0,0.279282401272254,0.229160424011684,0.717873024576814,1.19807400299395,0.429226048136571,0,1.2764859772478,0.360299883542404,0,0.157566364614447,0.164831716762333,0.0674035438541849,0,0,0,0,0,0.137539436597234,0,0,0,0.242998226632099,0.335434687599266,0.157611414598396,0.262272940674991,0,0,0,0,1.32418394073086,0,0,0,0,1.19730191562487,0.082092520749339,0.511164065356265,0,0.293104467356165,0,0.517131825446202,0.39669780522807,0,0,0.106787412567695,0,0.414239055347196,0,0.197611631897944,0.121792598380896,0,0,0,0,0.655745261419609,0.157054096250234,0,0.122026264901963,0.250381861413,0.573409195690071,0.554645257684261,0.434674820589684,0,0.124980407962107,0,0.285465333544967,0,0,0.144921028610825,0,0,0,0,0,0,0.228840068396924,0.151230923763239,0.15543720058278,0,0.159296767163702,0,0,0.414706207840855,0,0,0.150257608997218,0.380805212168795,0,0,0.322231671127465,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0.414775308455192,0.389720617678777,0,0,0,0,0.211312123358627,0,0.106691729694141,0,0,0,0.279759015438889,0,0.127894371303652,0,0,0,0,0.212574920101683,0.123935764259002,0.558644917973244,0,0.157723490002507,0,0,0,0.256916900385838,0,0.638535436228605,0,0,0.138314504928436,0.968853873791107,0,0.196295437002051,0,0,0,0,0,0,0.376051641746286,0.20170506870352,0.781514011233092,0.523813388962845,0,0.147856086217045,0.270150338473579,0,0.826747186004736,0.19024743058172,0,0.548257766857182,0.496211178389294,0,0,0,0.336283722218824,0,0,0,0,0.514464028312255,0.0679697329768317,0.197318320688547,0,0.111231401892069,0.39246546425257,0,0,0,0,0,0.78624198594322,0.158013611732727,0,0,0.801711364730253,0,0,0,0,0.236664001461131,0.0852134047591577,0,0,0,0,0,0.098150233615243,0,0.647428837187895,0.205325613712494,1.1598144313382,0,0,0,0,0,0.109940516745429,0.301925687133347,0,0.874238242015829,0,0.245148321753905,0,0.588925401344836,0.297046400327086,0,0,0.0939839179798536,0.193373663920732,0.199882311849858,0,0.352894871715692,0,0,0,0.430018749454354,0,0.203974470572744,0,0,0,0,0,0,0,0.126698501011437,0.101988829741982,0,0,0,0.530450887527676,0,0,0.930896962757057,0.213233981900981,0,0.0645889098360061,0.31037357147929,0.112131862580613,0.25458863311266,0,0,0.684466602170562,0.202056159043763,0.286888821570705,1.33064142618405,0.0814032686109745,0,0,0.449126010532934,0,0.488965776731466,0.406896178315738,1.33151354837103,0,0 | ||
|short_description=p3@PPARA | |short_description=p3@PPARA | ||
}} | }} |
Latest revision as of 05:19, 25 September 2015
Short description: | p3@PPARA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PPARA_5end |
Coexpression cluster: | NA |
Association with transcript: | -22bp_to_ENST00000440343_5end |
EntrezGene: | PPARA |
HGNC: | 9232 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 1.26e-08 | 6 |
keratocyte | 5.28e-07 | 2 |
migratory cranial neural crest cell | 5.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
chest muscle | 2.06e-13 | 1 |
respiratory system muscle | 2.06e-13 | 1 |
skeletal muscle of trunk | 2.06e-13 | 1 |
respiratory system skeletal muscle | 2.06e-13 | 1 |
thoracic segment muscle | 2.06e-13 | 1 |
chest organ | 2.06e-13 | 1 |
muscle of trunk | 2.06e-13 | 1 |
diaphragm | 2.06e-13 | 1 |
future diaphragm | 2.06e-13 | 1 |
vagina | 2.62e-13 | 1 |
heart left ventricle | 3.33e-13 | 1 |
cardiac ventricle | 3.33e-13 | 1 |
future cardiac ventricle | 3.33e-13 | 1 |
muscle structure | 2.43e-07 | 2 |
muscle organ | 2.43e-07 | 2 |
open tracheal system trachea | 2.91e-07 | 2 |
head connective tissue | 5.28e-07 | 2 |
substantia propria of cornea | 5.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
vascular disease | 5.38e-13 | 1 |
ischemia | 5.38e-13 | 1 |
extrinsic cardiomyopathy | 5.38e-13 | 1 |
myocardial ischemia | 5.38e-13 | 1 |
myocardial infarction | 5.38e-13 | 1 |
heart disease | 3.93e-07 | 2 |