FF:11694-123A2: Difference between revisions

Latest revision as of 18:15, 4 June 2020

Name:	Amniotic Epithelial Cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12125
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	amnion
dev stage	NA
sex	NA
age	NA
cell type	amniotic epithelial cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC7105
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005453

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12125		CAGE		DRX008109		DRR008981

Accession ID Hg19

Library id		BAM		CTSS
CNhs12125		DRZ000406		DRZ001791

Accession ID Hg38

Library id		BAM		CTSS
CNhs12125		DRZ011756		DRZ013141

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005453

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10005.GTGAAA		sRNA-Seq		DRX037064		DRR041430

Accession ID Hg19

Library id		BAM		CTSS
SRhi10005.GTGAAA		DRZ007072

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0972
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.528
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	1.072
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0646
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.371
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.199
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.184
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.262
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.62
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	1.032
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.256
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.102
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.253
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.243
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.433
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.639
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.313
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.471
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.739
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12125

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.683
MA0003.1	MA0003.1	0.329
MA0004.1	MA0004.1	0.603
MA0006.1	MA0006.1	0.0699
MA0007.1	MA0007.1	0.0117
MA0009.1	MA0009.1	0.607
MA0014.1	MA0014.1	0.747
MA0017.1	MA0017.1	0.66
MA0018.2	MA0018.2	0.0151
MA0019.1	MA0019.1	0.242
MA0024.1	MA0024.1	0.141
MA0025.1	MA0025.1	0.0257
MA0027.1	MA0027.1	0.733
MA0028.1	MA0028.1	0.0225
MA0029.1	MA0029.1	0.0672
MA0030.1	MA0030.1	0.0203
MA0031.1	MA0031.1	0.0169
MA0035.2	MA0035.2	0.228
MA0038.1	MA0038.1	0.339
MA0039.2	MA0039.2	0.126
MA0040.1	MA0040.1	0.302
MA0041.1	MA0041.1	0.75
MA0042.1	MA0042.1	0.415
MA0043.1	MA0043.1	7.24482e-4
MA0046.1	MA0046.1	0.798
MA0047.2	MA0047.2	0.424
MA0048.1	MA0048.1	0.96
MA0050.1	MA0050.1	1.80754e-6
MA0051.1	MA0051.1	1.24616e-6
MA0052.1	MA0052.1	0.569
MA0055.1	MA0055.1	0.0446
MA0057.1	MA0057.1	0.336
MA0058.1	MA0058.1	0.281
MA0059.1	MA0059.1	0.726
MA0060.1	MA0060.1	0.464
MA0061.1	MA0061.1	0.712
MA0062.2	MA0062.2	8.79378e-6
MA0065.2	MA0065.2	0.173
MA0066.1	MA0066.1	0.138
MA0067.1	MA0067.1	0.00613
MA0068.1	MA0068.1	0.208
MA0069.1	MA0069.1	0.401
MA0070.1	MA0070.1	0.0245
MA0071.1	MA0071.1	0.484
MA0072.1	MA0072.1	0.675
MA0073.1	MA0073.1	0.407
MA0074.1	MA0074.1	0.364
MA0076.1	MA0076.1	5.29519e-4
MA0077.1	MA0077.1	0.587
MA0078.1	MA0078.1	0.501
MA0079.2	MA0079.2	0.445
MA0080.2	MA0080.2	4.77093e-8
MA0081.1	MA0081.1	7.38018e-4
MA0083.1	MA0083.1	0.768
MA0084.1	MA0084.1	0.298
MA0087.1	MA0087.1	0.842
MA0088.1	MA0088.1	0.567
MA0090.1	MA0090.1	1.99227e-4
MA0091.1	MA0091.1	0.197
MA0092.1	MA0092.1	0.304
MA0093.1	MA0093.1	0.47
MA0099.2	MA0099.2	0.00121
MA0100.1	MA0100.1	0.24
MA0101.1	MA0101.1	0.167
MA0102.2	MA0102.2	2.042e-4
MA0103.1	MA0103.1	0.00339
MA0104.2	MA0104.2	0.144
MA0105.1	MA0105.1	0.89
MA0106.1	MA0106.1	0.228
MA0107.1	MA0107.1	0.115
MA0108.2	MA0108.2	0.291
MA0111.1	MA0111.1	0.613
MA0112.2	MA0112.2	0.016
MA0113.1	MA0113.1	0.00699
MA0114.1	MA0114.1	0.324
MA0115.1	MA0115.1	0.304
MA0116.1	MA0116.1	0.534
MA0117.1	MA0117.1	0.288
MA0119.1	MA0119.1	0.221
MA0122.1	MA0122.1	0.94
MA0124.1	MA0124.1	0.771
MA0125.1	MA0125.1	0.335
MA0131.1	MA0131.1	0.452
MA0135.1	MA0135.1	0.696
MA0136.1	MA0136.1	8.98397e-10
MA0137.2	MA0137.2	0.00426
MA0138.2	MA0138.2	0.424
MA0139.1	MA0139.1	0.914
MA0140.1	MA0140.1	0.595
MA0141.1	MA0141.1	0.354
MA0142.1	MA0142.1	0.682
MA0143.1	MA0143.1	0.25
MA0144.1	MA0144.1	0.986
MA0145.1	MA0145.1	0.143
MA0146.1	MA0146.1	0.0327
MA0147.1	MA0147.1	0.259
MA0148.1	MA0148.1	0.976
MA0149.1	MA0149.1	0.816
MA0150.1	MA0150.1	0.481
MA0152.1	MA0152.1	0.871
MA0153.1	MA0153.1	0.46
MA0154.1	MA0154.1	0.277
MA0155.1	MA0155.1	0.126
MA0156.1	MA0156.1	6.95269e-7
MA0157.1	MA0157.1	0.0152
MA0159.1	MA0159.1	0.323
MA0160.1	MA0160.1	0.784
MA0162.1	MA0162.1	0.0399
MA0163.1	MA0163.1	0.168
MA0164.1	MA0164.1	0.143
MA0258.1	MA0258.1	0.0877
MA0259.1	MA0259.1	0.141

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12125

Novel motif	Logo	P-value
1	1	0.806
10	10	0.781
100	100	0.758
101	101	0.641
102	102	0.75
103	103	0.21
104	104	0.868
105	105	0.252
106	106	0.00442
107	107	0.0102
108	108	0.119
109	109	0.0553
11	11	0.255
110	110	0.138
111	111	0.701
112	112	0.779
113	113	0.00653
114	114	0.575
115	115	0.567
116	116	0.412
117	117	0.34
118	118	0.433
119	119	0.155
12	12	0.952
120	120	0.191
121	121	0.553
122	122	0.741
123	123	0.664
124	124	0.239
125	125	0.505
126	126	0.407
127	127	0.505
128	128	0.0847
129	129	0.407
13	13	0.341
130	130	0.631
131	131	0.0168
132	132	0.177
133	133	0.298
134	134	0.21
135	135	0.496
136	136	0.554
137	137	0.113
138	138	0.616
139	139	0.871
14	14	0.792
140	140	0.282
141	141	0.674
142	142	0.154
143	143	0.828
144	144	0.558
145	145	0.441
146	146	0.113
147	147	0.156
148	148	0.161
149	149	0.0673
15	15	0.83
150	150	0.221
151	151	0.256
152	152	0.0272
153	153	0.212
154	154	0.757
155	155	0.467
156	156	0.437
157	157	0.415
158	158	0.723
159	159	0.539
16	16	0.0677
160	160	0.0635
161	161	0.307
162	162	0.202
163	163	0.93
164	164	0.708
165	165	0.998
166	166	0.644
167	167	0.273
168	168	0.524
169	169	0.0468
17	17	0.0672
18	18	0.147
19	19	0.272
2	2	0.0957
20	20	0.919
21	21	0.803
22	22	0.159
23	23	0.115
24	24	0.676
25	25	0.96
26	26	0.152
27	27	0.306
28	28	0.915
29	29	0.492
3	3	0.56
30	30	0.22
31	31	0.499
32	32	1.30338e-6
33	33	0.518
34	34	0.367
35	35	0.359
36	36	0.299
37	37	0.336
38	38	0.436
39	39	0.224
4	4	0.514
40	40	0.0368
41	41	0.996
42	42	0.83
43	43	0.196
44	44	0.217
45	45	0.138
46	46	0.334
47	47	0.669
48	48	0.201
49	49	0.194
5	5	0.928
50	50	0.404
51	51	0.215
52	52	0.224
53	53	0.821
54	54	0.226
55	55	0.132
56	56	0.32
57	57	0.459
58	58	0.7
59	59	0.0605
6	6	0.485
60	60	0.305
61	61	0.709
62	62	0.928
63	63	0.298
64	64	0.139
65	65	0.161
66	66	0.328
67	67	0.429
68	68	0.276
69	69	0.00233
7	7	0.613
70	70	0.0572
71	71	0.379
72	72	0.83
73	73	0.0339
74	74	0.0741
75	75	0.392
76	76	0.446
77	77	0.0165
78	78	0.496
79	79	0.0455
8	8	0.2
80	80	0.909
81	81	0.908
82	82	0.354
83	83	0.756
84	84	0.411
85	85	0.118
86	86	0.657
87	87	0.627
88	88	0.167
89	89	0.129
9	9	0.46
90	90	0.13
91	91	0.0987
92	92	0.456
93	93	0.5
94	94	0.398
95	95	0.144
96	96	0.918
97	97	0.341
98	98	0.591
99	99	0.00677

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12125

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000009 human amniotic epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002536 (amniotic epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000009 (human amniotic epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000158,UBERON:0000305,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000478,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0003081,UBERON:0004120,UBERON:0004121,UBERON:0004871,UBERON:0004923,UBERON:0005423,UBERON:0005631
+|DRA_sample_Accession=CAGE@SAMD00005453
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000255,CL:0000548,CL:0002371,CL:0002536
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005453
+|accession_numbers=CAGE;DRX008109;DRR008981;DRZ000406;DRZ001791;DRZ011756;DRZ013141
+|accession_numbers_RNASeq=sRNA-Seq;DRX037064;DRR041430;DRZ007072
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002536
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000009
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!2.15!369.27!OSR1;;chr5:153857778..153857794,-!p1@HAND1!2.11!129.25!HAND1;;chr10:8096631..8096660,+!p1@GATA3!1.76!67.79!GATA3;;chr10:8096772..8096787,+!p2@GATA3!1.75!64.36!GATA3;;chr8:102504651..102504683,+!p1@GRHL2!1.71!50.12!GRHL2;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!55.39!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.63!67.52!TFAP2A;;chr3:111314186..111314204,-!p1@ZBED2!1.63!41.68!ZBED2;;chr1:209979467..209979494,-!p1@IRF6!1.57!40.88!IRF6;;chr8:49833948..49833973,-!p2@SNAI2!1.48!179.10!SNAI2;;chr8:102504690..102504704,+!p3@GRHL2!1.48!29.54!GRHL2;;chr4:174450089..174450153,-!p2@HAND2!1.48!29.01!HAND2;;chr5:2751762..2751784,-!p1@IRX2!1.46!27.70!IRX2;;chr8:102504979..102505010,+!p2@GRHL2!1.44!26.64!GRHL2;;chr20:55204351..55204377,+!p1@TFAP2C!1.42!31.65!TFAP2C;;chr19:46801639..46801699,+!p1@HIF3A!1.42!25.06!HIF3A;;chr4:188916918..188916942,+!p1@ZFP42!1.40!24.27!ZFP42;;chr17:7493405..7493419,-!p1@SOX15!1.38!23.21!SOX15;;chr8:49833978..49833996,-!p1@SNAI2!1.37!445.77!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!1.37!60.93!EPAS1;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.46!HAND2;;chr8:80679993..80680011,-!p1@HEY1!1.28!25.85!HEY1;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.24!CREB3L1;;chr19:46800289..46800327,+!p2@HIF3A!1.21!15.03!HIF3A;;chr5:3595934..3595957,+!p2@IRX1!1.15!13.19!IRX1;;chr5:3595977..3595999,+!p1@IRX1!1.15!13.19!IRX1;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.19!SOX11;;chr5:72744594..72744609,-!p1@FOXD1!1.11!54.86!FOXD1;;chr5:153857800..153857812,-!p2@HAND1!1.10!11.61!HAND1;;chr1:6479968..6479986,-!p1@HES2!1.09!11.34!HES2;;chr11:46299539..46299620,+!p2@CREB3L1!1.07!18.20!CREB3L1;;chr5:3595961..3595975,+!p3@IRX1!1.06!10.55!IRX1;;chr2:231084820..231084836,-!p5@SP110!1.03!11.34!SP110;;chr6:10412576..10412599,-!p5@TFAP2A!1.03!9.76!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!1.02!9.50!IRX2;;chr16:31076332..31076388,-!p3@ZNF668!0.99!8.70!ZNF668;;chr6:10415484..10415508,-!p3@TFAP2A!0.97!8.44!TFAP2A;;chr10:8100691..8100732,+!p5@GATA3!0.97!8.44!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.96!73.59!PPP1R13L;;chr17:7492684..7492778,-!p2@SOX15!0.96!17.41!SOX15;;chr9:110251836..110251887,-!p4@KLF4!0.96!10.81!KLF4;;chr16:86612320..86612394,+!p1@FOXL1!0.96!8.18!FOXL1;;chr2:19558327..19558334,-!p2@OSR1!0.96!8.18!OSR1;;chr16:67881588..67881612,-!p2@CENPT!0.95!10.81!CENPT;;chr10:8095593..8095625,+!p3@GATA3!0.93!8.97!GATA3;;chr19:926001..926046,+!p1@ARID3A!0.92!26.11!ARID3A;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.44!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.12!KDM5D;;chr4:299227..299272,-!p1@ZNF732!0.90!6.86!ZNF732;;chr14:75988771..75988826,+!p1@BATF!0.88!8.97!BATF;;chr20:39317868..39317884,-!p1@MAFB!0.87!81.50!MAFB;;chr20:18038521..18038571,-!p1@OVOL2!0.87!6.33!OVOL2;;chr19:17356189..17356221,-!p2@NR2F6!0.85!10.29!NR2F6;;chr12:54447637..54447659,+!p4@HOXC4!0.85!6.07!HOXC4;;chr3:111314230..111314241,-!p2@ZBED2!0.85!6.07!ZBED2;;chr12:66218836..66218888,+!p1@HMGA2!0.84!59.08!HMGA2;;chr19:926055..926068,+!p2@ARID3A!0.84!13.45!ARID3A;;chr11:113930425..113930471,+!p1@ZBTB16!0.84!8.70!ZBTB16;;chr5:153857819..153857824,-!p3@HAND1!0.83!5.80!HAND1;;chr6:10413188..10413249,-!p7@TFAP2A!0.83!5.80!TFAP2A;;chr16:86600426..86600441,+!p1@FOXC2!0.82!14.77!FOXC2;;chr6:29648890..29648944,-!p1@ZFP57!0.82!5.54!ZFP57;;chr1:209979411..209979433,-!p2@IRF6!0.82!5.54!IRF6;;chr8:80680024..80680046,-!p2@HEY1!0.81!6.33!HEY1;;chr15:96869255..96869291,+!p6@NR2F2!0.79!9.76!NR2F2;;chr16:73093174..73093209,-!p3@ZFHX3!0.79!7.12!ZFHX3;;chr2:16080659..16080685,+!p1@MYCN!0.78!5.01!MYCN;;chr9:110250697..110250738,-!p2@KLF4!0.77!5.80!KLF4;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.42!ETV4;;chr3:52001448..52001478,-!p2@PCBP4!0.75!71.48!PCBP4;;chr17:38465413..38465438,+!p5@RARA!0.75!7.65!RARA;;chr5:174151553..174151610,+!p1@MSX2!0.74!7.91!MSX2;;chr7:27153454..27153469,-!p2@HOXA3!0.74!4.48!HOXA3;;chr1:209979449..209979460,-!p3@IRF6!0.74!4.48!IRF6;;chr2:46524878..46524891,+!p3@EPAS1!0.73!8.18!EPAS1;;chr15:96869292..96869320,+!p15@NR2F2!0.72!6.33!NR2F2;;chr1:38512457..38512474,-!p1@POU3F1!0.72!4.75!POU3F1;;chr9:110252035..110252057,-!p1@KLF4!0.71!74.91!KLF4;;chr2:60780607..60780624,-!p2@BCL11A!0.69!13.19!BCL11A;;chr3:52001396..52001425,-!p4@PCBP4!0.69!7.39!PCBP4;;chr3:52001426..52001447,-!p3@PCBP4!0.68!11.87!PCBP4;;chr10:77161650..77161661,-!p4@ZNF503!0.68!5.54!ZNF503;;chr6:85473156..85473210,-!p2@TBX18!0.68!4.75!TBX18;;chrX:56258844..56258882,+!p1@KLF8!0.67!5.28!KLF8;;chr10:77161504..77161530,-!p1@ZNF503!0.66!54.86!ZNF503;;chr11:113930291..113930339,+!p2@ZBTB16!0.66!6.33!ZBTB16;;chr5:72744445..72744466,-!p2@FOXD1!0.66!6.33!FOXD1;;chr16:73082004..73082033,-!p5@ZFHX3!0.66!6.07!ZFHX3;;chr15:96869511..96869525,+!p16@NR2F2!0.65!3.96!NR2F2;;chr8:102504932..102504952,+!p4@GRHL2!0.65!3.43!GRHL2;;chr2:46524537..46524553,+!p1@EPAS1!0.63!388.00!EPAS1;;chr1:151032860..151032918,+!p1@MLLT11!0.63!46.16!MLLT11;;chr20:2673383..2673441,+!p1@EBF4!0.63!5.54!EBF4;;chr12:54447599..54447630,+!p3@HOXC4!0.63!4.22!HOXC4;;chr5:72743793..72743855,-!p4@FOXD1!0.63!3.96!FOXD1;;chr13:73633131..73633149,+!p1@KLF5!0.62!40.62!KLF5;;chr6:19837592..19837621,+!p1@ID4!0.62!22.95!ID4;;chr10:77161533..77161546,-!p2@ZNF503!0.62!14.77!ZNF503;;chr12:54422217..54422239,+!p3@HOXC6!0.62!3.17!HOXC6;;chr6:10415263..10415274,-!p8@TFAP2A!0.62!3.17!TFAP2A;;chr1:164528410..164528428,+!p1@PBX1!0.60!26.64!PBX1;;chr3:71630980..71631110,-!p3@FOXP1!0.60!12.13!FOXP1;;chr3:5021268..5021282,+!p4@BHLHE40!0.60!6.86!BHLHE40;;chr16:29817841..29817865,+!p1@MAZ!0.59!76.23!MAZ;;chr1:59249732..59249749,-!p2@JUN!0.59!42.47!JUN;;chr17:45928443..45928473,-!p2@SP6!0.59!2.90!SP6;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.90!ZFY;;chr6:35464817..35464894,-!p1@TEAD3!0.58!52.23!TEAD3;;chr2:43453734..43453751,-!p1@ZFP36L2!0.57!361.10!ZFP36L2;;chr10:3827389..3827408,-!p1@KLF6!0.57!258.23!KLF6;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!239.76!TAX1BP3;;chr16:29817789..29817838,+!p2@MAZ!0.57!45.10!MAZ;;chr17:61920280..61920343,-!p2@SMARCD2!0.57!32.44!SMARCD2;;chr17:41622834..41622883,-!p6@ETV4!0.57!3.43!ETV4;;chrX:106960285..106960299,-!p1@TSC22D3!0.56!89.42!TSC22D3;;chr17:70117153..70117174,+!p1@SOX9!0.56!33.50!SOX9;;chr12:53625966..53626012,-!p2@RARG!0.56!8.18!RARG;;chr10:77161133..77161176,-!p3@ZNF503!0.56!6.59!ZNF503;;chr11:113930401..113930422,+!p3@ZBTB16!0.56!2.64!ZBTB16;;chr20:18038486..18038520,-!p2@OVOL2!0.56!2.64!OVOL2;;chr4:57547454..57547469,-!p1@HOPX!0.56!2.64!HOPX;;chr14:69259772..69259790,-!p1@ZFP36L1!0.55!327.86!ZFP36L1;;chr12:124873357..124873401,-!p1@NCOR2!0.55!37.45!NCOR2;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.18!HOXB2;;chr7:27135591..27135658,-!p1@HOXA1!0.55!5.54!HOXA1;;chr17:41622925..41622976,-!p3@ETV4!0.55!4.22!ETV4;;chr3:42947600..42947680,+!p1@ZNF662!0.55!3.96!ZNF662;;chr2:60778035..60778060,-!p4@BCL11A!0.55!3.17!BCL11A;;chr19:19516464..19516492,+!p4@GATAD2A!0.54!15.30!GATAD2A;;chr8:102217679..102217719,-!p2@ZNF706!0.54!10.29!ZNF706;;chrX:106959661..106959763,-!p4@TSC22D3!0.54!8.70!TSC22D3;;chr17:41622765..41622821,-!p2@ETV4!0.54!4.22!ETV4;;chr6:126240356..126240379,+!p7@NCOA7!0.54!3.17!NCOA7;;chr3:12330560..12330579,+!p1@PPARG!0.53!2.90!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.53!2.90!FOXP1;;chr22:24093154..24093183,-!p2@ZNF70!0.53!2.37!ZNF70;;chr2:5832493..5832507,+!p2@SOX11!0.53!2.37!SOX11;;chr16:67881647..67881663,-!p3@CENPT!0.53!2.37!CENPT;;chr10:8097321..8097348,+!p4@GATA3!0.53!2.37!GATA3;;chr11:125034640..125034655,+!p1@PKNOX2!0.53!2.37!PKNOX2;;chr2:60780753..60780800,-!p1@BCL11A!0.52!14.24!BCL11A;;chr12:66218598..66218645,+!p2@HMGA2!0.52!13.45!HMGA2;;chr2:25475120..25475176,-!p2@DNMT3A!0.52!3.43!DNMT3A;;chr20:42295745..42295765,+!p1@MYBL2!0.51!48.27!MYBL2;;chr11:61520075..61520136,+!p1@C11orf9!0.51!5.54!C11orf9;;chr3:5021113..5021180,+!p1@BHLHE40!0.50!203.63!BHLHE40;;chr1:59249707..59249727,-!p1@JUN!0.50!120.81!JUN;;chr3:150126759..150126784,+!p2@TSC22D2!0.50!12.66!TSC22D2;;chr17:46622070..46622109,-!p1@HOXB2!0.50!5.80!HOXB2;;chr19:4066890..4066903,-!p6@ZBTB7A!0.50!3.96!ZBTB7A;;chr5:72744562..72744573,-!p3@FOXD1!0.50!2.90!FOXD1;;chr5:174151612..174151633,+!p2@MSX2!0.49!2.11!MSX2;;chr6:10419768..10419819,-!p6@TFAP2A!0.49!2.11!TFAP2A;;chr16:73093210..73093223,-!p13@ZFHX3!0.49!2.11!ZFHX3;;chr16:86600870..86600921,+!p2@FOXC2!0.49!2.11!FOXC2;;chr4:149366111..149366128,-!p7@NR3C2!0.49!2.11!NR3C2;;chr4:57522598..57522664,-!p3@HOPX!0.49!2.11!HOPX;;chr10:8097295..8097320,+!p6@GATA3!0.49!2.11!GATA3;;chr5:176738887..176738934,-!p1@MXD3!0.48!17.67!MXD3;;chr3:12329358..12329393,+!p3@PPARG!0.48!6.07!PPARG;;chr6:31869828..31869880,-!p1@ZBTB12!0.48!4.48!ZBTB12;;chr11:46299186..46299195,+!p3@CREB3L1!0.48!2.37!CREB3L1;;chr12:66218378..66218401,+!p6@HMGA2!0.47!3.43!HMGA2;;chr18:6414884..6414942,-!p1@L3MBTL4!0.47!2.64!L3MBTL4;;chr1:33721900..33721921,+!p2@ZNF362!0.46!5.80!ZNF362;;chr19:7580944..7581031,+!p1@ZNF358!0.45!77.55!ZNF358;;chr19:45908286..45908291,-!p3@PPP1R13L!0.45!1.85!PPP1R13L;;chr19:46806868..46806883,+!p3@HIF3A!0.45!1.85!HIF3A;;chr7:27142290..27142310,-!p1@HOXA2!0.45!1.85!HOXA2;;chr2:16080635..16080650,+!p4@MYCN!0.45!1.85!MYCN;;chr22:42229246..42229270,+!p2@SREBF2!0.44!30.86!SREBF2;;chr15:31619326..31619390,+!p2@KLF13!0.44!28.75!KLF13;;chr2:85360499..85360598,+!p1@TCF7L1!0.44!13.45!TCF7L1;;chr12:66218255..66218304,+!p3@HMGA2!0.44!6.07!HMGA2;;chr2:113993052..113993097,-!p2@PAX8!0.44!5.01!PAX8;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.44!3.43!MEIS3P1;;chr6:85474299..85474324,-!p1@TBX18!0.43!3.69!TBX18;;chr12:66218573..66218596,+!p7@HMGA2!0.43!2.90!HMGA2;;chr6:32157947..32157992,-!p1@PBX2!0.42!40.09!PBX2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.42!26.38!TAX1BP3;;chr14:62162258..62162269,+!p2@HIF1A!0.42!22.42!HIF1A;;chr6:126240380..126240430,+!p2@NCOA7!0.42!5.54!NCOA7;;chr17:41623009..41623053,-!p4@ETV4!0.42!3.17!ETV4;;chr3:32023232..32023273,+!p1@ZNF860!0.42!2.64!ZNF860;;chr16:73081974..73082002,-!p7@ZFHX3!0.42!2.11!ZFHX3;;chr7:137686791..137686821,-!p1@CREB3L2!0.41!67.26!CREB3L2;;chr2:101436564..101436647,+!p1@NPAS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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002536;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11694-123A2
-|is_a=EFO:0002091;;FF:0000002;;FF:0000009;;FF:0000210
+|is_a=EFO:0002091;;FF:0000009
+|is_obsolete=
+|library_id=CNhs12125
+|library_id_phase_based=2:CNhs12125
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11694
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTGAAA.11694
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11694
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTGAAA.11694
 |name=Amniotic Epithelial Cells, donor3
 |namespace=FANTOM5
@@ Line 42: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12125,LSID839,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10005,,,
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 |rna_box=123
 |rna_catalog_number=SC7105
@@ Line 56: / Line 81: @@
 |rna_tube_id=123A2
 |rna_weight_ug=10
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 |sample_age=
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 |sample_cell_catalog=lot:4229
 |sample_cell_line=
@@ Line 69: / Line 96: @@
 |sample_ethnicity=
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subunit;1.14132789921854e-19!GO:0044455;mitochondrial membrane part;1.24327669561515e-19!GO:0005783;endoplasmic reticulum;3.95991552015406e-19!GO:0005794;Golgi apparatus;6.07438811398105e-19!GO:0051649;establishment of cellular localization;2.22282938681351e-18!GO:0051641;cellular localization;4.01738493357723e-18!GO:0005654;nucleoplasm;5.09898838027952e-18!GO:0005681;spliceosome;1.26630315923216e-17!GO:0031980;mitochondrial lumen;2.93982469866356e-17!GO:0005759;mitochondrial matrix;2.93982469866356e-17!GO:0048770;pigment granule;3.2584455647551e-17!GO:0042470;melanosome;3.2584455647551e-17!GO:0005746;mitochondrial respiratory chain;5.22192498828649e-17!GO:0044432;endoplasmic reticulum part;5.74567652223802e-17!GO:0007049;cell cycle;6.98255320782946e-17!GO:0006457;protein folding;7.54400169895086e-17!GO:0016874;ligase activity;1.3822033815108e-16!GO:0043412;biopolymer modification;6.46672094886807e-16!GO:0044451;nucleoplasm part;2.10311561899571e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.30750679048129e-15!GO:0008134;transcription factor binding;3.56133318237236e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.3996751114769e-15!GO:0003954;NADH dehydrogenase activity;4.3996751114769e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.3996751114769e-15!GO:0006464;protein modification process;8.44422235165202e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.89232048357378e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.10360564141228e-14!GO:0016462;pyrophosphatase activity;4.27242481789248e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.27354283893483e-14!GO:0051186;cofactor metabolic process;4.98469527876305e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;5.39381896367408e-14!GO:0006512;ubiquitin cycle;7.73288385438584e-14!GO:0005761;mitochondrial ribosome;1.33665124278717e-13!GO:0000313;organellar ribosome;1.33665124278717e-13!GO:0022402;cell cycle process;2.14980531445712e-13!GO:0000166;nucleotide binding;2.65781014741704e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.7102227573383e-13!GO:0042773;ATP synthesis coupled electron transport;2.7102227573383e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.35006065775451e-13!GO:0017111;nucleoside-triphosphatase activity;4.97748530522332e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.1029590168051e-13!GO:0045271;respiratory chain complex I;5.1029590168051e-13!GO:0005747;mitochondrial respiratory chain complex I;5.1029590168051e-13!GO:0022618;protein-RNA complex assembly;6.83243558321686e-13!GO:0005730;nucleolus;1.41366617920115e-12!GO:0044265;cellular macromolecule catabolic process;1.4680667419012e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.66843403003532e-12!GO:0043285;biopolymer catabolic process;2.01776524425636e-12!GO:0000278;mitotic cell cycle;4.46581633639452e-12!GO:0048193;Golgi vesicle transport;6.94692820812717e-12!GO:0006605;protein targeting;7.0103996500218e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.40355141115893e-12!GO:0005789;endoplasmic reticulum membrane;9.43397318701156e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.41744873564519e-11!GO:0009057;macromolecule catabolic process;1.76167021290021e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;2.06246709913255e-11!GO:0016192;vesicle-mediated transport;2.32357528470341e-11!GO:0044248;cellular catabolic process;2.63582181206005e-11!GO:0043687;post-translational protein modification;2.80032505982292e-11!GO:0044257;cellular protein catabolic process;3.37771685687761e-11!GO:0019941;modification-dependent protein catabolic process;3.52440053364234e-11!GO:0043632;modification-dependent macromolecule catabolic process;3.52440053364234e-11!GO:0006511;ubiquitin-dependent protein catabolic process;4.03225564714077e-11!GO:0051082;unfolded protein binding;5.26632994113408e-11!GO:0003676;nucleic acid binding;5.90163749562219e-11!GO:0006732;coenzyme metabolic process;7.53188408494834e-11!GO:0030163;protein catabolic process;1.09826593427222e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.61869939232151e-10!GO:0008135;translation factor activity, nucleic acid binding;3.26943544056531e-10!GO:0032553;ribonucleotide binding;4.16159244497449e-10!GO:0032555;purine ribonucleotide binding;4.16159244497449e-10!GO:0051276;chromosome organization and biogenesis;5.20021626541575e-10!GO:0012501;programmed cell death;7.22135666298257e-10!GO:0006915;apoptosis;9.694420866522e-10!GO:0044431;Golgi apparatus part;1.03955014267505e-09!GO:0006323;DNA packaging;1.2081540597631e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.27473054652171e-09!GO:0000375;RNA splicing, via transesterification reactions;1.27473054652171e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.27473054652171e-09!GO:0005793;ER-Golgi intermediate compartment;1.5186931792419e-09!GO:0008639;small protein conjugating enzyme activity;2.47077054289709e-09!GO:0003712;transcription cofactor activity;2.66577847469667e-09!GO:0006461;protein complex assembly;2.84990675233609e-09!GO:0009055;electron carrier activity;3.38964800371524e-09!GO:0022403;cell cycle phase;3.83922658203352e-09!GO:0016070;RNA metabolic process;3.94280260805455e-09!GO:0017076;purine nucleotide binding;3.94406352276697e-09!GO:0000074;regulation of progression through cell cycle;3.97280966875366e-09!GO:0051726;regulation of cell cycle;4.11490303387483e-09!GO:0044427;chromosomal part;4.64346509066278e-09!GO:0004842;ubiquitin-protein ligase activity;5.7813328836445e-09!GO:0006974;response to DNA damage stimulus;8.86134327000331e-09!GO:0016740;transferase activity;8.86134327000331e-09!GO:0005694;chromosome;9.29111604261418e-09!GO:0005768;endosome;1.01466182373197e-08!GO:0008219;cell death;1.12974188271089e-08!GO:0016265;death;1.12974188271089e-08!GO:0019787;small conjugating protein ligase activity;1.1818469910742e-08!GO:0008565;protein transporter activity;1.19302493568485e-08!GO:0005635;nuclear envelope;1.26192659431237e-08!GO:0005524;ATP binding;1.51861703487142e-08!GO:0009259;ribonucleotide metabolic process;1.85211943533179e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.86253145399568e-08!GO:0032559;adenyl ribonucleotide binding;2.80393410941007e-08!GO:0065004;protein-DNA complex assembly;3.00727659953057e-08!GO:0006333;chromatin assembly or disassembly;3.24305786192324e-08!GO:0003743;translation initiation factor activity;4.04628362016876e-08!GO:0048475;coated membrane;4.16833880117634e-08!GO:0030117;membrane coat;4.16833880117634e-08!GO:0009150;purine ribonucleotide metabolic process;5.37790797456069e-08!GO:0006163;purine nucleotide metabolic process;5.46415796054749e-08!GO:0000785;chromatin;5.46415796054749e-08!GO:0006413;translational initiation;5.52991102061319e-08!GO:0006446;regulation of translational initiation;5.78698927449844e-08!GO:0007067;mitosis;5.88278456951209e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.99978804689659e-08!GO:0031965;nuclear membrane;7.59958875535304e-08!GO:0030120;vesicle coat;7.66578942417836e-08!GO:0030662;coated vesicle membrane;7.66578942417836e-08!GO:0000087;M phase of mitotic cell cycle;7.67114477288789e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.95260735405646e-08!GO:0030532;small nuclear ribonucleoprotein complex;9.7648001254086e-08!GO:0042254;ribosome biogenesis and assembly;1.0710044443582e-07!GO:0051188;cofactor biosynthetic process;1.19403643218215e-07!GO:0016881;acid-amino acid ligase activity;1.54931530606151e-07!GO:0006399;tRNA metabolic process;1.57639830128782e-07!GO:0009060;aerobic respiration;1.58614808483885e-07!GO:0005788;endoplasmic reticulum lumen;1.72622721070327e-07!GO:0009260;ribonucleotide biosynthetic process;1.88461498870417e-07!GO:0016604;nuclear body;2.01207983223895e-07!GO:0000139;Golgi membrane;2.28827108448892e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.31977519580524e-07!GO:0006164;purine nucleotide biosynthetic process;2.42381003796976e-07!GO:0006334;nucleosome assembly;2.47309596454996e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.56997233463309e-07!GO:0030554;adenyl nucleotide binding;3.16553126129558e-07!GO:0006913;nucleocytoplasmic transport;3.26071218052593e-07!GO:0009141;nucleoside triphosphate metabolic process;3.45428848133862e-07!GO:0031497;chromatin assembly;4.17418529440083e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.18091111337636e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.18091111337636e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.33529683159456e-07!GO:0006281;DNA repair;4.51293526055445e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.52805096550426e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.52805096550426e-07!GO:0015986;ATP synthesis coupled proton transport;4.76662616078174e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.76662616078174e-07!GO:0005773;vacuole;4.85830085627849e-07!GO:0031252;leading edge;5.11382038324728e-07!GO:0007005;mitochondrion organization and biogenesis;5.15704669176217e-07!GO:0051169;nuclear transport;5.38773010718239e-07!GO:0044453;nuclear membrane part;6.92297226691785e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.47712680840297e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.47712680840297e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.67896158363099e-07!GO:0009056;catabolic process;8.71431898821425e-07!GO:0003924;GTPase activity;8.79633104982917e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.07051450259897e-07!GO:0004812;aminoacyl-tRNA ligase activity;9.07051450259897e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.07051450259897e-07!GO:0006793;phosphorus metabolic process;9.23349854716069e-07!GO:0006796;phosphate metabolic process;9.23349854716069e-07!GO:0009719;response to endogenous stimulus;9.98490537755042e-07!GO:0048523;negative regulation of cellular process;1.19850193409758e-06!GO:0006366;transcription from RNA polymerase II promoter;1.31379092742286e-06!GO:0045333;cellular respiration;1.34270594596473e-06!GO:0017038;protein import;1.47138973869958e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.58815536608287e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.12352257850732e-06!GO:0051301;cell division;2.25880069500848e-06!GO:0043038;amino acid activation;2.71050464514213e-06!GO:0006418;tRNA aminoacylation for protein translation;2.71050464514213e-06!GO:0043039;tRNA aminoacylation;2.71050464514213e-06!GO:0019829;cation-transporting ATPase activity;2.87459250224449e-06!GO:0051246;regulation of protein metabolic process;2.98967966923482e-06!GO:0031988;membrane-bound vesicle;3.24643499328398e-06!GO:0000279;M phase;3.41985033656872e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.58981872054947e-06!GO:0009117;nucleotide metabolic process;3.80927686627982e-06!GO:0065002;intracellular protein transport across a membrane;3.84596264019759e-06!GO:0042981;regulation of apoptosis;4.08977443959124e-06!GO:0046034;ATP metabolic process;4.11936535273276e-06!GO:0042623;ATPase activity, coupled;4.61149375165259e-06!GO:0008654;phospholipid biosynthetic process;4.62283751977426e-06!GO:0043067;regulation of programmed cell death;4.95014061562358e-06!GO:0016607;nuclear speck;5.0746933150648e-06!GO:0031982;vesicle;5.13427859111578e-06!GO:0005770;late endosome;5.2960691643341e-06!GO:0044440;endosomal part;5.30565890394053e-06!GO:0010008;endosome membrane;5.30565890394053e-06!GO:0045259;proton-transporting ATP synthase complex;5.62545612720114e-06!GO:0006754;ATP biosynthetic process;5.95950025109463e-06!GO:0006753;nucleoside phosphate metabolic process;5.95950025109463e-06!GO:0006099;tricarboxylic acid cycle;6.10526105228359e-06!GO:0046356;acetyl-CoA catabolic process;6.10526105228359e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.19041488579639e-06!GO:0031410;cytoplasmic vesicle;6.28210463800318e-06!GO:0015630;microtubule cytoskeleton;6.90852697418072e-06!GO:0006260;DNA replication;7.51909232605097e-06!GO:0005798;Golgi-associated vesicle;8.97701323340183e-06!GO:0003714;transcription corepressor activity;9.12042176779353e-06!GO:0000323;lytic vacuole;9.18290168158033e-06!GO:0005764;lysosome;9.18290168158033e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.41739489881605e-06!GO:0032446;protein modification by small protein conjugation;9.44646625161351e-06!GO:0016887;ATPase activity;1.11181214393249e-05!GO:0016853;isomerase activity;1.13376135668821e-05!GO:0006084;acetyl-CoA metabolic process;1.21545525956122e-05!GO:0005762;mitochondrial large ribosomal subunit;1.31447900348899e-05!GO:0000315;organellar large ribosomal subunit;1.31447900348899e-05!GO:0016567;protein ubiquitination;1.3179121471402e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.39214253276551e-05!GO:0051329;interphase of mitotic cell cycle;1.41181366336938e-05!GO:0009108;coenzyme biosynthetic process;1.57505128531995e-05!GO:0043623;cellular protein complex assembly;1.64638382009811e-05!GO:0005905;coated pit;1.71538839291873e-05!GO:0006916;anti-apoptosis;2.09654333817496e-05!GO:0051325;interphase;2.23364080105355e-05!GO:0031324;negative regulation of cellular metabolic process;2.23684224858186e-05!GO:0048519;negative regulation of biological process;2.24350756036282e-05!GO:0016310;phosphorylation;2.29260504229909e-05!GO:0005643;nuclear pore;2.62095667436771e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.88163576279349e-05!GO:0016859;cis-trans isomerase activity;3.06514362221509e-05!GO:0006364;rRNA processing;3.18275115026826e-05!GO:0016568;chromatin modification;3.20905607481817e-05!GO:0050794;regulation of cellular process;3.70531633222401e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.0171642756522e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.02870456647383e-05!GO:0009109;coenzyme catabolic process;4.07847901810814e-05!GO:0043069;negative regulation of programmed cell death;4.7260087758098e-05!GO:0003697;single-stranded DNA binding;4.79362234521591e-05!GO:0006752;group transfer coenzyme metabolic process;5.10745136629293e-05!GO:0016072;rRNA metabolic process;5.23776731887726e-05!GO:0051187;cofactor catabolic process;5.6875840222381e-05!GO:0005839;proteasome core complex (sensu Eukaryota);5.85768896540945e-05!GO:0016564;transcription repressor activity;6.08362453120835e-05!GO:0043066;negative regulation of apoptosis;6.34090225692917e-05!GO:0019843;rRNA binding;6.54247495855064e-05!GO:0030133;transport vesicle;7.67875230970602e-05!GO:0016491;oxidoreductase activity;7.76159489584541e-05!GO:0009892;negative regulation of metabolic process;9.34019207207868e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.41649688538334e-05!GO:0016563;transcription activator activity;9.41676045044186e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.64860505873737e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.64860505873737e-05!GO:0019899;enzyme binding;0.000100398672103604!GO:0030118;clathrin coat;0.00010207107020882!GO:0005667;transcription factor complex;0.00010215067264896!GO:0007010;cytoskeleton organization and biogenesis;0.000103465532756718!GO:0016779;nucleotidyltransferase activity;0.000107632664882793!GO:0000245;spliceosome assembly;0.000121977388023477!GO:0045454;cell redox homeostasis;0.000128268795252555!GO:0016126;sterol biosynthetic process;0.000151461430193378!GO:0003713;transcription coactivator activity;0.00015461820198388!GO:0000151;ubiquitin ligase complex;0.000159324983600539!GO:0045786;negative regulation of progression through cell cycle;0.000161263517637479!GO:0000786;nucleosome;0.000189113123990325!GO:0030867;rough endoplasmic reticulum membrane;0.000196747470153525!GO:0000314;organellar small ribosomal subunit;0.000203496751637003!GO:0005763;mitochondrial small ribosomal subunit;0.000203496751637003!GO:0046930;pore complex;0.000205380865412!GO:0015980;energy derivation by oxidation of organic compounds;0.0002076157854951!GO:0008092;cytoskeletal protein binding;0.000230440723271227!GO:0042802;identical protein binding;0.000230722255851295!GO:0030029;actin filament-based process;0.000235774979792496!GO:0046474;glycerophospholipid biosynthetic process;0.000245742641668748!GO:0005525;GTP binding;0.000257081629485566!GO:0008361;regulation of cell size;0.000259450435293455!GO:0004386;helicase activity;0.000261753016868289!GO:0007243;protein kinase cascade;0.000270094832127361!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000273859364905118!GO:0001558;regulation of cell growth;0.000317676955964702!GO:0004298;threonine endopeptidase activity;0.000322563022917433!GO:0030119;AP-type membrane coat adaptor complex;0.000322563022917433!GO:0016787;hydrolase activity;0.000324900469552146!GO:0016049;cell growth;0.000325616058831801!GO:0065009;regulation of a molecular function;0.000338538063912361!GO:0003899;DNA-directed RNA polymerase activity;0.000368326203300163!GO:0008250;oligosaccharyl transferase complex;0.000381113884140783!GO:0001726;ruffle;0.000387778132792788!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000438081903670914!GO:0043566;structure-specific DNA binding;0.000447513416667331!GO:0007264;small GTPase mediated signal transduction;0.000469491886634256!GO:0005791;rough endoplasmic reticulum;0.000475156754954885!GO:0050657;nucleic acid transport;0.000502555749303589!GO:0051236;establishment of RNA localization;0.000502555749303589!GO:0050658;RNA transport;0.000502555749303589!GO:0006403;RNA localization;0.000521711991287603!GO:0008026;ATP-dependent helicase activity;0.000530484772653366!GO:0006091;generation of precursor metabolites and energy;0.00056683888552254!GO:0030131;clathrin adaptor complex;0.000568669246082608!GO:0005048;signal sequence binding;0.000575657057205648!GO:0051170;nuclear import;0.00058965710609768!GO:0008610;lipid biosynthetic process;0.000596444656350759!GO:0051789;response to protein stimulus;0.000614567845640458!GO:0006986;response to unfolded protein;0.000614567845640458!GO:0030176;integral to endoplasmic reticulum membrane;0.000625477797703681!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000646683475015282!GO:0051427;hormone receptor binding;0.000692972682705831!GO:0006606;protein import into nucleus;0.000800850511067875!GO:0030132;clathrin coat of coated pit;0.000841514285288028!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00084926708244778!GO:0005769;early endosome;0.000857745831556557!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00088674656497122!GO:0019867;outer membrane;0.00088674656497122!GO:0006650;glycerophospholipid metabolic process;0.000893406032611785!GO:0030658;transport vesicle membrane;0.000906296938764571!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000906296938764571!GO:0006613;cotranslational protein targeting to membrane;0.000911995840561309!GO:0043681;protein import into mitochondrion;0.000911995840561309!GO:0005813;centrosome;0.000986200860108395!GO:0046467;membrane lipid biosynthetic process;0.00102141965117129!GO:0030027;lamellipodium;0.00103476025140362!GO:0018196;peptidyl-asparagine modification;0.00103934618129062!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00103934618129062!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00108290096868003!GO:0005885;Arp2/3 protein complex;0.00110943326376437!GO:0044262;cellular carbohydrate metabolic process;0.00112188946694798!GO:0031968;organelle outer membrane;0.00114649235711456!GO:0031902;late endosome membrane;0.00114972298554902!GO:0051252;regulation of RNA metabolic process;0.00118570188324549!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00121609472408577!GO:0046489;phosphoinositide biosynthetic process;0.00124485114095175!GO:0005741;mitochondrial outer membrane;0.00130682666281361!GO:0035257;nuclear hormone receptor binding;0.0013127974947221!GO:0043488;regulation of mRNA stability;0.00138070861419989!GO:0043487;regulation of RNA stability;0.00138070861419989!GO:0007006;mitochondrial membrane organization and biogenesis;0.00139947984706572!GO:0051920;peroxiredoxin activity;0.00140759826922258!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00147625854783555!GO:0006695;cholesterol biosynthetic process;0.00153440231383038!GO:0016481;negative regulation of transcription;0.00155426588639443!GO:0048471;perinuclear region of cytoplasm;0.00156818764804002!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00157570723869476!GO:0006414;translational elongation;0.00157592896607808!GO:0032561;guanyl ribonucleotide binding;0.00167153597197942!GO:0019001;guanyl nucleotide binding;0.00167153597197942!GO:0004576;oligosaccharyl transferase activity;0.00177419577624056!GO:0016044;membrane organization and biogenesis;0.00181510532341121!GO:0030659;cytoplasmic vesicle membrane;0.00190997141598576!GO:0048522;positive regulation of cellular process;0.00203361711169368!GO:0043021;ribonucleoprotein binding;0.00204510232681288!GO:0006839;mitochondrial transport;0.00204510232681288!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00207309900102832!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00224336390208633!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00224336390208633!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00224336390208633!GO:0040008;regulation of growth;0.00230440910517095!GO:0030125;clathrin vesicle coat;0.00230993306376738!GO:0030665;clathrin coated vesicle membrane;0.00230993306376738!GO:0005815;microtubule organizing center;0.00243421843555371!GO:0006626;protein targeting to mitochondrion;0.00245532291561771!GO:0030384;phosphoinositide metabolic process;0.0027693539997081!GO:0030660;Golgi-associated vesicle membrane;0.00290786872516382!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0030142370276309!GO:0009165;nucleotide biosynthetic process;0.00334395350617701!GO:0005774;vacuolar membrane;0.00336463299502091!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00350717086637322!GO:0005819;spindle;0.00350891056032599!GO:0050789;regulation of biological process;0.00382724248401199!GO:0006509;membrane protein ectodomain proteolysis;0.00382790787216386!GO:0033619;membrane protein proteolysis;0.00382790787216386!GO:0048487;beta-tubulin binding;0.00412213354425213!GO:0017166;vinculin binding;0.00412475971778095!GO:0007040;lysosome organization and biogenesis;0.00426800760606263!GO:0006402;mRNA catabolic process;0.00460105243370952!GO:0006891;intra-Golgi vesicle-mediated transport;0.00487335911487275!GO:0051028;mRNA transport;0.00492569063552431!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00492569063552431!GO:0015002;heme-copper terminal oxidase activity;0.00492569063552431!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00492569063552431!GO:0004129;cytochrome-c oxidase activity;0.00492569063552431!GO:0006979;response to oxidative stress;0.0050207559835741!GO:0005684;U2-dependent spliceosome;0.00506113076698528!GO:0031301;integral to organelle membrane;0.00525329108422911!GO:0005874;microtubule;0.00529781726401757!GO:0044433;cytoplasmic vesicle part;0.00532057550787702!GO:0003724;RNA helicase activity;0.00550355279571626!GO:0009967;positive regulation of signal transduction;0.00605126290901696!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00605126290901696!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00605126290901696!GO:0030663;COPI coated vesicle membrane;0.00621855581588836!GO:0030126;COPI vesicle coat;0.00621855581588836!GO:0003684;damaged DNA binding;0.00626671346321699!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00626671346321699!GO:0030880;RNA polymerase complex;0.00626671346321699!GO:0030137;COPI-coated vesicle;0.00636903808952195!GO:0043284;biopolymer biosynthetic process;0.00648248046858102!GO:0007088;regulation of mitosis;0.00658116146877212!GO:0006643;membrane lipid metabolic process;0.00683253088787861!GO:0051168;nuclear export;0.00695676868389354!GO:0050790;regulation of catalytic activity;0.00700400105084956!GO:0045936;negative regulation of phosphate metabolic process;0.00707062872879562!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00709695163903881!GO:0030031;cell projection biogenesis;0.00734060050522612!GO:0005869;dynactin complex;0.00745591246826091!GO:0016197;endosome transport;0.00758284279930947!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00865566810957068!GO:0015399;primary active transmembrane transporter activity;0.00865566810957068!GO:0044437;vacuolar part;0.00879087186664791!GO:0007033;vacuole organization and biogenesis;0.0087990249310388!GO:0031072;heat shock protein binding;0.00888637117412965!GO:0006082;organic acid metabolic process;0.00916996835098613!GO:0006779;porphyrin biosynthetic process;0.00916996835098613!GO:0033014;tetrapyrrole biosynthetic process;0.00916996835098613!GO:0007265;Ras protein signal transduction;0.00917449617246941!GO:0006778;porphyrin metabolic process;0.0102274656226693!GO:0033013;tetrapyrrole metabolic process;0.0102274656226693!GO:0019752;carboxylic acid metabolic process;0.0102590412724958!GO:0003729;mRNA binding;0.0103615665309101!GO:0006289;nucleotide-excision repair;0.0105046962432564!GO:0008033;tRNA processing;0.0107153653531904!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0107548746708783!GO:0006612;protein targeting to membrane;0.011081043018862!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0111144081772157!GO:0016311;dephosphorylation;0.0111370159667889!GO:0030145;manganese ion binding;0.0115573512388725!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0115573512388725!GO:0030134;ER to Golgi transport vesicle;0.0115829914282509!GO:0006506;GPI anchor biosynthetic process;0.0116145025329826!GO:0000082;G1/S transition of mitotic cell cycle;0.0120470846304533!GO:0016301;kinase activity;0.0121903754946329!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0131591575456856!GO:0000428;DNA-directed RNA polymerase complex;0.0131591575456856!GO:0006818;hydrogen transport;0.0132194022477004!GO:0003711;transcription elongation regulator activity;0.0132254800258139!GO:0006644;phospholipid metabolic process;0.0135508563833139!GO:0045892;negative regulation of transcription, DNA-dependent;0.0137074853414391!GO:0008139;nuclear localization sequence binding;0.0137166314223286!GO:0016125;sterol metabolic process;0.0139471486649734!GO:0031529;ruffle organization and biogenesis;0.0140793905603022!GO:0005862;muscle thin filament tropomyosin;0.0140932698819284!GO:0005765;lysosomal membrane;0.0142605729566814!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0142932879594604!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0145609916433566!GO:0035258;steroid hormone receptor binding;0.014570710648263!GO:0005637;nuclear inner membrane;0.014926532828506!GO:0022890;inorganic cation transmembrane transporter activity;0.0152612397038828!GO:0012506;vesicle membrane;0.0154402643000912!GO:0030833;regulation of actin filament polymerization;0.0154753369402191!GO:0015992;proton transport;0.0157487464789392!GO:0035035;histone acetyltransferase binding;0.0158731032950576!GO:0006458;'de novo' protein folding;0.0159026571410585!GO:0051084;'de novo' posttranslational protein folding;0.0159026571410585!GO:0016363;nuclear matrix;0.0164456551492241!GO:0015631;tubulin binding;0.016838522909763!GO:0045792;negative regulation of cell size;0.0170411412673724!GO:0006740;NADPH regeneration;0.0174367043980842!GO:0006098;pentose-phosphate shunt;0.0174367043980842!GO:0030127;COPII vesicle coat;0.0174367043980842!GO:0012507;ER to Golgi transport vesicle membrane;0.0174367043980842!GO:0042326;negative regulation of phosphorylation;0.0174596982539252!GO:0008186;RNA-dependent ATPase activity;0.0176475235918567!GO:0006595;polyamine metabolic process;0.0178528554249911!GO:0046483;heterocycle metabolic process;0.017992931779055!GO:0006505;GPI anchor metabolic process;0.0184938634098538!GO:0030308;negative regulation of cell growth;0.0186295258614455!GO:0040029;regulation of gene expression, epigenetic;0.0187754373980144!GO:0043154;negative regulation of caspase activity;0.0189094996304676!GO:0051128;regulation of cellular component organization and biogenesis;0.0193467785314778!GO:0005657;replication fork;0.0193467785314778!GO:0008022;protein C-terminus binding;0.019466780460072!GO:0000059;protein import into nucleus, docking;0.020128865297478!GO:0008637;apoptotic mitochondrial changes;0.0201881132757825!GO:0006783;heme biosynthetic process;0.0206376048323807!GO:0051287;NAD binding;0.0206480362508073!GO:0016272;prefoldin complex;0.0209846681712453!GO:0005856;cytoskeleton;0.0214968049262552!GO:0008286;insulin receptor signaling pathway;0.0215976620526944!GO:0000075;cell cycle checkpoint;0.021713193843119!GO:0006401;RNA catabolic process;0.022743234473984!GO:0045334;clathrin-coated endocytic vesicle;0.0228727266135294!GO:0051087;chaperone binding;0.0230494570862272!GO:0000209;protein polyubiquitination;0.0230494570862272!GO:0042168;heme metabolic process;0.0231251949076433!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0232414683854757!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0233834711143249!GO:0004177;aminopeptidase activity;0.0242083971371322!GO:0045941;positive regulation of transcription;0.0248151269793238!GO:0051101;regulation of DNA binding;0.0252039671952991!GO:0051098;regulation of binding;0.0257090030153761!GO:0004674;protein serine/threonine kinase activity;0.0265137679153357!GO:0045926;negative regulation of growth;0.0267284313024125!GO:0045893;positive regulation of transcription, DNA-dependent;0.0269637443433742!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0272171819545476!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0272171819545476!GO:0010257;NADH dehydrogenase complex assembly;0.0272171819545476!GO:0033108;mitochondrial respiratory chain complex assembly;0.0272171819545476!GO:0006066;alcohol metabolic process;0.0275472541208289!GO:0006383;transcription from RNA polymerase III promoter;0.0275472541208289!GO:0030521;androgen receptor signaling pathway;0.0277315214717894!GO:0046426;negative regulation of JAK-STAT cascade;0.0283995782928621!GO:0006497;protein amino acid lipidation;0.0294019618423719!GO:0000086;G2/M transition of mitotic cell cycle;0.0295647979770744!GO:0000049;tRNA binding;0.0300387724784053!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0301248672608032!GO:0007051;spindle organization and biogenesis;0.0301662713913593!GO:0008629;induction of apoptosis by intracellular signals;0.0315839654213781!GO:0048500;signal recognition particle;0.0318273257700368!GO:0016741;transferase activity, transferring one-carbon groups;0.0318622390391617!GO:0009100;glycoprotein metabolic process;0.0321823357581348!GO:0007050;cell cycle arrest;0.0325212073535671!GO:0001836;release of cytochrome c from mitochondria;0.0327702014558612!GO:0016791;phosphoric monoester hydrolase activity;0.0327745705149987!GO:0042158;lipoprotein biosynthetic process;0.033168119466547!GO:0008632;apoptotic program;0.0331906780418029!GO:0006520;amino acid metabolic process;0.0341308100244024!GO:0051085;chaperone cofactor-dependent protein folding;0.0342224833729408!GO:0005586;collagen type III;0.0344010102008078!GO:0004721;phosphoprotein phosphatase activity;0.0345121256694561!GO:0030128;clathrin coat of endocytic vesicle;0.0345121256694561!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0345121256694561!GO:0030122;AP-2 adaptor complex;0.0345121256694561!GO:0008168;methyltransferase activity;0.0348427881901716!GO:0048518;positive regulation of biological process;0.0348427881901716!GO:0031272;regulation of pseudopodium formation;0.0348427881901716!GO:0031269;pseudopodium formation;0.0348427881901716!GO:0031344;regulation of cell projection organization and biogenesis;0.0348427881901716!GO:0031268;pseudopodium organization and biogenesis;0.0348427881901716!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0348427881901716!GO:0031274;positive regulation of pseudopodium formation;0.0348427881901716!GO:0050811;GABA receptor binding;0.0348440763587812!GO:0016407;acetyltransferase activity;0.0350418489362923!GO:0005925;focal adhesion;0.0350794079449587!GO:0030140;trans-Golgi network transport vesicle;0.0350794079449587!GO:0003756;protein disulfide isomerase activity;0.0351782188247464!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0351782188247464!GO:0009112;nucleobase metabolic process;0.0353095840524022!GO:0006417;regulation of translation;0.0354245994041399!GO:0051338;regulation of transferase activity;0.0356055027887898!GO:0006518;peptide metabolic process;0.0356055027887898!GO:0045737;positive regulation of cyclin-dependent protein kinase activity;0.0361577954233257!GO:0006261;DNA-dependent DNA replication;0.0362574492484169!GO:0008094;DNA-dependent ATPase activity;0.0364415937434213!GO:0019222;regulation of metabolic process;0.0364490771764047!GO:0043492;ATPase activity, coupled to movement of substances;0.0372796386523671!GO:0033673;negative regulation of kinase activity;0.0375575769151519!GO:0006469;negative regulation of protein kinase activity;0.0375575769151519!GO:0004004;ATP-dependent RNA helicase activity;0.0377664048026206!GO:0032507;maintenance of cellular protein localization;0.0378748640146356!GO:0006220;pyrimidine nucleotide metabolic process;0.0378809877074307!GO:0008426;protein kinase C inhibitor activity;0.0383754403280965!GO:0046519;sphingoid metabolic process;0.0389688903279499!GO:0006611;protein export from nucleus;0.039810327052495!GO:0019904;protein domain specific binding;0.0400746752465907!GO:0016860;intramolecular oxidoreductase activity;0.0408192387458569!GO:0051348;negative regulation of transferase activity;0.0408988866980289!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0409024656016198!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.041192041385183!GO:0006284;base-excision repair;0.0414001097146383!GO:0044452;nucleolar part;0.0414055208455588!GO:0051235;maintenance of localization;0.041729758505746!GO:0045806;negative regulation of endocytosis;0.042640051744269!GO:0030508;thiol-disulfide exchange intermediate activity;0.0432401746766607!GO:0032508;DNA duplex unwinding;0.0433245587936771!GO:0032392;DNA geometric change;0.0433245587936771!GO:0046488;phosphatidylinositol metabolic process;0.0433245587936771!GO:0048468;cell development;0.0437591552002565!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0439055182010374!GO:0009116;nucleoside metabolic process;0.0441716478867774!GO:0043065;positive regulation of apoptosis;0.0442026207554028!GO:0030433;ER-associated protein catabolic process;0.0455047371319787!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0455047371319787!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.045722081500753!GO:0044438;microbody part;0.045722081500753!GO:0044439;peroxisomal part;0.045722081500753!GO:0007034;vacuolar transport;0.0460599386794119!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0474187419914504!GO:0008538;proteasome activator activity;0.0478052680131294!GO:0006470;protein amino acid dephosphorylation;0.047914618965256!GO:0048144;fibroblast proliferation;0.047914618965256!GO:0048145;regulation of fibroblast proliferation;0.047914618965256!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0484245769313643!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0484245769313643!GO:0043068;positive regulation of programmed cell death;0.0487882806598586!GO:0003746;translation elongation factor activity;0.0490373938973429!GO:0050178;phenylpyruvate tautomerase activity;0.0493036456254549!GO:0004860;protein kinase inhibitor activity;0.0493823453137912
 |sample_id=11694
 |sample_note=
@@ Line 76: / Line 104: @@
 |sample_tissue=amnion
 |top_motifs=XCPE1{core}:1.53674754509;ZNF148:1.52209059906;GLI1..3:1.51983168826;HOX{A5,B5}:1.48791360227;TBX4,5:1.40573919308;TFAP2{A,C}:1.36466803148;PPARG:1.28786191579;ZNF384:1.18700600414;SNAI1..3:1.16856693471;TEAD1:1.16557186504;HAND1,2:1.15448351;TP53:1.1316013646;GCM1,2:1.12250261649;RXRA_VDR{dimer}:1.06058676707;NKX2-3_NKX2-5:1.0034362069;ZIC1..3:0.998438497153;ZEB1:0.961685713455;ESR1:0.957588297953;ZNF238:0.925954674568;TFCP2:0.925828218554;PAX5:0.851574327757;MAZ:0.814529889232;RORA:0.787188976705;ZNF423:0.743003101218;ONECUT1,2:0.721788499931;EBF1:0.701473310778;GTF2A1,2:0.666635767025;SP1:0.608880259542;RXR{A,B,G}:0.605552690968;EN1,2:0.593833450697;NR3C1:0.593709407667;UFEwm:0.549230857341;HIC1:0.544437571352;TFAP4:0.527575063696;NKX2-1,4:0.520752052723;POU2F1..3:0.511877881684;KLF4:0.492740341906;PAX1,9:0.450436390731;FOXM1:0.408946932193;TEF:0.406642930457;AIRE:0.392252949831;NR6A1:0.385615347069;HMX1:0.363527533386;TLX1..3_NFIC{dimer}:0.335919203689;TFAP2B:0.324368788639;CDC5L:0.320929022798;TOPORS:0.292452193526;LEF1_TCF7_TCF7L1,2:0.288595127876;FOS_FOS{B,L1}_JUN{B,D}:0.282314957258;NKX2-2,8:0.276818880895;AR:0.267271196223;TBP:0.265294886283;GFI1:0.262371449251;BACH2:0.252530877672;HOX{A4,D4}:0.249659532524;PAX8:0.220199126732;SPZ1:0.199450806085;GTF2I:0.196864592596;SOX17:0.195985755573;ESRRA:0.194919850092;LHX3,4:0.184858865004;NR1H4:0.182232179558;EP300:0.173834555565;MYOD1:0.163692968274;PAX4:0.156448122172;PBX1:0.155443867252;FOXL1:0.144270045797;GZF1:0.140051510076;FOSL2:0.134831605829;MTF1:0.120038802132;ZBTB6:0.116901200603;HLF:0.113088384533;DBP:0.104407668854;STAT5{A,B}:0.0878200468676;XBP1:0.0587518567664;ALX4:0.0563700767953;RREB1:0.052565976189;POU6F1:0.0398163359755;JUN:0.0306027373729;POU3F1..4:0.0271250530946;HOX{A6,A7,B6,B7}:0.0101948048975;IKZF1:-0.0195291727023;E2F1..5:-0.0328691369932;NR5A1,2:-0.0397315541223;bHLH_family:-0.0414607877052;SRF:-0.0429405422841;HNF1A:-0.0599697216976;MED-1{core}:-0.0657970741867;GATA6:-0.093709307229;HOXA9_MEIS1:-0.100279750956;NFY{A,B,C}:-0.111508604428;MTE{core}:-0.121433361237;TFDP1:-0.139156179026;TLX2:-0.145681835194;ADNP_IRX_SIX_ZHX:-0.149016191352;SOX5:-0.151067577175;ARID5B:-0.172984766627;PITX1..3:-0.175325967891;NFE2:-0.184605544475;HIF1A:-0.19878144875;EVI1:-0.199174027431;NHLH1,2:-0.211599363006;NFE2L2:-0.21984856909;SOX{8,9,10}:-0.236287061;POU1F1:-0.24717091501;HNF4A_NR2F1,2:-0.252687587502;FOXQ1:-0.256029836923;PATZ1:-0.270406401887;SOX2:-0.284422414623;GFI1B:-0.29914963702;TAL1_TCF{3,4,12}:-0.315014309544;NFKB1_REL_RELA:-0.325404806901;MYB:-0.331993390376;SMAD1..7,9:-0.339148869133;MYBL2:-0.356127366115;MZF1:-0.399006395902;LMO2:-0.400947676061;NANOG:-0.403656972144;ZNF143:-0.423862039431;ATF2:-0.425053957558;EGR1..3:-0.431045400604;MEF2{A,B,C,D}:-0.442219985187;ATF6:-0.445932260271;FOXA2:-0.455500435254;NKX3-2:-0.464268722372;NFIL3:-0.472179505181;YY1:-0.473658015279;REST:-0.483634888438;CRX:-0.485439916459;ETS1,2:-0.500393964222;PAX3,7:-0.504493607401;FOXO1,3,4:-0.509501882895;RFX1:-0.525833091159;OCT4_SOX2{dimer}:-0.541178202365;PAX2:-0.552008857014;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.552725509891;HES1:-0.57326997151;RUNX1..3:-0.576928796521;NANOG{mouse}:-0.581306991857;PRDM1:-0.619724380925;PRRX1,2:-0.658694830473;HSF1,2:-0.658713675096;HMGA1,2:-0.661700517696;SPIB:-0.697216570111;SPI1:-0.715836716724;STAT1,3:-0.767347346259;ALX1:-0.770417732673;CEBPA,B_DDIT3:-0.776309424636;NFATC1..3:-0.777762213459;NKX3-1:-0.797280996909;CUX2:-0.828442633748;BPTF:-0.838314724721;GATA4:-0.843601288986;ELF1,2,4:-0.849672329996;PAX6:-0.857834486857;NFE2L1:-0.882576647637;MYFfamily:-0.911995761634;ATF4:-0.915872908765;FOX{F1,F2,J1}:-0.929965779313;STAT2,4,6:-0.951333763112;IRF7:-0.969604906356;FOXP3:-0.971277081219;ZFP161:-0.976687482818;FOXP1:-0.988768634406;FOX{D1,D2}:-0.9911030218;IRF1,2:-0.9962683546;ELK1,4_GABP{A,B1}:-1.01914917802;T:-1.03069711942;BREu{core}:-1.05689508999;PDX1:-1.11381616301;MAFB:-1.11589990084;NRF1:-1.11777604671;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.11854336393;FOXN1:-1.13912382776;CREB1:-1.14727122929;POU5F1:-1.15589914486;ATF5_CREB3:-1.17973897803;FOX{I1,J2}:-1.18082304304;VSX1,2:-1.1867744281;CDX1,2,4:-1.20128068883;NFIX:-1.22205767616;SREBF1,2:-1.26316140077;FOXD3:-1.27433855325;RFX2..5_RFXANK_RFXAP:-1.36344589014;DMAP1_NCOR{1,2}_SMARC:-1.42352091116;ZBTB16:-1.53171023763;TGIF1:-1.54944332069;AHR_ARNT_ARNT2:-1.67445318792;NKX6-1,2:-1.70836102965;IKZF2:-1.82422795265;HBP1_HMGB_SSRP1_UBTF:-1.83272350626;RBPJ:-1.881991576
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11694-123A2;search_select_hide=table117:FF:11694-123A2
 }}

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FF:11694-123A2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:15, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0