FF:14329-155E9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005754 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008035;DRR008907;DRZ000332;DRZ001717;DRZ011682;DRZ013067 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet=DOID:4,DOID:17,DOID:450,DOID:7,DOID:66,DOID:423,DOID:0080000,DOID:11722 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000408,FF:0000350,FF:0000253,FF:0000406,FF:0000667 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.85!710.74!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.81!170.24!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.74!54.18!HOXC5;;chr9:132427883..132427951,+!p2@PRRX2!1.58!36.77!PRRX2;;chr15:57511609..57511651,+!p2@TCF12!1.46!45.56!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.46!31.21!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!1.42!112.48!FOXD1;;chr2:102091566..102091581,-!p1@RFX8!1.41!24.76!RFX8;;chr1:197886421..197886432,+!p2@LHX9!1.38!22.96!LHX9;;chr2:177001290..177001315,+!p1@HOXD3!1.36!21.71!HOXD3;;chr8:67525443..67525459,-!p2@MYBL1!1.35!31.39!MYBL1;;chr15:37392534..37392562,-!p10@MEIS2!1.33!22.42!MEIS2;;chr11:46299539..46299620,+!p2@CREB3L1!1.31!32.83!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.27!24.04!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!1.25!16.68!EMX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.24!83.95!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!1.23!15.97!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.22!15.79!RUNX1T1;;chr1:197886665..197886732,+!p3@LHX9!1.22!15.43!LHX9;;chr9:132427972..132428056,+!p1@PRRX2!1.19!18.84!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.16!15.43!PRRX1;;chr15:37392616..37392638,-!p2@MEIS2!1.15!40.54!MEIS2;;chr2:176973498..176973524,+!p1@HOXD10!1.15!13.27!HOXD10;;chr7:44143925..44143970,+!p1@AEBP1!1.14!285.23!AEBP1;;chr7:44143978..44143989,+!p2@AEBP1!1.14!23.68!AEBP1;;chr15:37392703..37392717,-!p8@MEIS2!1.13!17.76!MEIS2;;chr15:37392724..37392757,-!p1@MEIS2!1.11!54.71!MEIS2;;chr21:36260773..36260804,-!p7@RUNX1!1.11!16.15!RUNX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.10!14.17!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!1.08!67.27!ID4;;chr1:170632959..170632987,+!p4@PRRX1!1.08!12.20!PRRX1;;chr2:176969097..176969109,+!p3@HOXD11!1.08!11.12!HOXD11;;chr20:50179368..50179392,-!p2@NFATC2!1.07!13.99!NFATC2;;chr5:321810..321877,+!p1@AHRR!1.06!33.73!AHRR;;chr5:158526917..158526932,-!p1@EBF1!1.03!24.40!EBF1;;chr2:172949484..172949522,+!p1@DLX1!1.03!9.69!DLX1;;chr2:176969228..176969260,+!p1@HOXD11!1.03!9.69!HOXD11;;chr10:63809106..63809127,+!p1@ARID5B!1.01!126.47!ARID5B;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.95!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!1.01!13.45!SATB2;;chr15:37392576..37392589,-!p12@MEIS2!1.00!11.12!MEIS2;;chr11:44331576..44331650,-!p1@ALX4!1.00!8.97!ALX4;;chr4:81118647..81118666,+!p1@PRDM8!0.99!11.66!PRDM8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.98!8.61!HOXC5;;chr8:93074848..93074871,-!p3@RUNX1T1!0.98!8.61!RUNX1T1;;chr20:55204351..55204377,+!p1@TFAP2C!0.97!10.58!TFAP2C;;chr10:28034739..28034756,-!p1@MKX!0.97!8.43!MKX;;chr4:174451370..174451387,-!p1@HAND2!0.97!8.43!HAND2;;chr3:147111231..147111281,+!p3@ZIC1!0.97!8.25!ZIC1;;chr5:3595977..3595999,+!p1@IRX1!0.95!7.89!IRX1;;chr6:85474198..85474212,-!p3@TBX18!0.95!7.89!TBX18;;chr7:27192185..27192209,-!p1@HOXA3!0.95!7.89!HOXA3;;chrX:591524..591527,+!p1@SHOX!0.95!7.89!SHOX;;chr12:124873357..124873401,-!p1@NCOR2!0.94!93.10!NCOR2;;chr15:37390850..37390909,-!p3@MEIS2!0.94!15.61!MEIS2;;chr6:85474299..85474324,-!p1@TBX18!0.94!14.17!TBX18;;chr2:223163706..223163730,-!p1@PAX3!0.94!7.71!PAX3;;chr14:61116183..61116208,-!p1@SIX1!0.93!29.42!SIX1;;chr4:95128841..95128865,+!p4@SMARCAD1!0.92!15.61!SMARCAD1;;chr2:102091144..102091183,-!p2@RFX8!0.92!7.35!RFX8;;chr2:19558373..19558392,-!p1@OSR1!0.91!20.09!OSR1;;chr7:44143997..44144008,+!p3@AEBP1!0.91!9.15!AEBP1;;chr3:157823517..157823562,-!p1@SHOX2!0.91!7.71!SHOX2;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.18!NPAS1;;chr10:114710244..114710257,+!p3@TCF7L2!0.90!19.73!TCF7L2;;chr7:27205136..27205164,-!p1@HOXA9!0.90!7.00!HOXA9;;chr3:114343768..114343822,-!p1@ZBTB20!0.89!30.86!ZBTB20;;chr14:24837368..24837401,+!p1@NFATC4!0.89!16.50!NFATC4;;chr5:72744445..72744466,-!p2@FOXD1!0.89!11.66!FOXD1;;chr1:170632723..170632739,+!p8@PRRX1!0.89!6.82!PRRX1;;chr12:114843940..114843955,-!p2@TBX5!0.89!6.82!TBX5;;chr12:54402745..54402788,+!p1@HOXC8!0.89!6.82!HOXC8;;chr19:13134772..13134822,+!p2@NFIX!0.88!9.87!NFIX;;chr1:170632477..170632506,+!p6@PRRX1!0.88!6.64!PRRX1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.87!27.98!LRRFIP2;;chr6:10412600..10412637,-!p1@TFAP2A!0.87!10.94!TFAP2A;;chr1:170632250..170632277,+!p7@PRRX1!0.87!6.46!PRRX1;;chr11:46316699..46316719,+!p10@CREB3L1!0.87!6.46!CREB3L1;;chr2:121493425..121493474,+!p1@GLI2!0.86!14.17!GLI2;;chr15:37390482..37390572,-!p7@MEIS2!0.86!8.79!MEIS2;;chr5:72743793..72743855,-!p4@FOXD1!0.86!7.35!FOXD1;;chr3:147111198..147111225,+!p4@ZIC1!0.86!6.28!ZIC1;;chr19:45971246..45971265,+!p1@FOSB!0.85!120.19!FOSB;;chr1:170633058..170633084,+!p5@PRRX1!0.85!6.10!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.85!6.10!ZBED1;;chr12:80085061..80085119,-!p6@PAWR!0.84!9.69!PAWR;;chr15:37392593..37392607,-!p13@MEIS2!0.84!7.18!MEIS2;;chr3:25470156..25470227,+!p2@RARB!0.84!5.92!RARB;;chr12:53614115..53614154,-!p1@RARG!0.83!33.01!RARG;;chr2:172967276..172967296,-!p3@DLX2!0.82!5.56!DLX2;;chr2:121493492..121493537,+!p2@GLI2!0.81!9.51!GLI2;;chr18:53068911..53068935,-!p4@TCF4!0.81!6.28!TCF4;;chr6:144329384..144329405,-!p1@PLAGL1!0.80!67.63!PLAGL1;;chr11:65686802..65686818,+!p6@DRAP1!0.80!9.69!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.80!8.43!ZBTB38;;chr3:147127142..147127168,+!p1@ZIC1!0.80!5.38!ZIC1;;chr5:158527104..158527135,-!p4@EBF1!0.80!5.38!EBF1;;chr16:51185172..51185197,-!p1@SALL1!0.80!5.38!SALL1;;chr15:37390374..37390422,-!p9@MEIS2!0.79!6.46!MEIS2;;chr2:176969124..176969155,+!p5@HOXD11!0.79!5.20!HOXD11;;chr14:62162258..62162269,+!p2@HIF1A!0.78!53.46!HIF1A;;chr12:115121962..115121987,-!p1@TBX3!0.78!46.10!TBX3;;chr11:65686732..65686756,+!p2@DRAP1!0.78!23.14!DRAP1;;chr19:22817119..22817145,+!p1@ZNF492!0.78!8.79!ZNF492;;chr4:174450089..174450153,-!p2@HAND2!0.78!5.02!HAND2;;chr5:2751785..2751808,-!p2@IRX2!0.78!5.02!IRX2;;chr1:170632439..170632465,+!p11@PRRX1!0.78!5.02!PRRX1;;chr12:124873852..124873881,-!p3@NCOR2!0.77!32.29!NCOR2;;chr11:12696071..12696086,+!p3@TEAD1!0.77!6.64!TEAD1;;chr15:83953397..83953425,-!p1@BNC1!0.77!5.74!BNC1;;chr2:102091514..102091528,-!p6@RFX8!0.77!4.84!RFX8;;chr2:177001336..177001357,+!p2@HOXD3!0.77!4.84!HOXD3;;chr7:150945754..150945789,-!p2@SMARCD3!0.76!15.79!SMARCD3;;chr3:71630980..71631110,-!p3@FOXP1!0.75!17.76!FOXP1;;chr12:66218255..66218304,+!p3@HMGA2!0.75!13.45!HMGA2;;chr10:63809077..63809089,+!p5@ARID5B!0.75!10.76!ARID5B;;chr6:85473156..85473210,-!p2@TBX18!0.75!5.74!TBX18;;chr2:85981107..85981120,+!p3@ATOH8!0.75!4.66!ATOH8;;chr10:63661437..63661465,+!p2@ARID5B!0.74!95.61!ARID5B;;chr5:72744562..72744573,-!p3@FOXD1!0.74!5.74!FOXD1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.74!4.84!GLIS1;;chr20:55205825..55205847,+!p2@TFAP2C!0.74!4.48!TFAP2C;;chr6:134210243..134210257,+!p1@TCF21!0.74!4.48!TCF21;;chr13:37494275..37494304,-!p2@SMAD9!0.74!4.48!SMAD9;;chr10:63809013..63809041,+!p3@ARID5B!0.73!26.91!ARID5B;;chr18:22932080..22932170,-!p1@ZNF521!0.73!20.27!ZNF521;;chr16:73092898..73092931,-!p1@ZFHX3!0.73!18.66!ZFHX3;;chr7:137686763..137686784,-!p5@CREB3L2!0.73!8.07!CREB3L2;;chr5:43067636..43067674,+!p6@ZNF131!0.73!6.10!ZNF131;;chr19:16435625..16435682,+!p1@KLF2!0.72!154.45!KLF2;;chr1:158979792..158979814,+!p2@IFI16!0.72!45.74!IFI16;;chr5:176738887..176738934,-!p1@MXD3!0.72!31.93!MXD3;;chr7:27213893..27213954,-!p1@HOXA10!0.72!4.31!HOXA10;;chr8:93115584..93115642,-!p5@RUNX1T1!0.72!4.31!RUNX1T1;;chr19:9609272..9609297,-!p1@ZNF560!0.72!4.31!ZNF560;;chr12:114845810..114845824,-!p1@TBX5!0.72!4.31!TBX5;;chr2:176969179..176969226,+!p2@HOXD11!0.72!4.31!HOXD11;;chr17:41277372..41277418,-!p1@BRCA1!0.71!16.68!BRCA1;;chr8:67525473..67525518,-!p1@MYBL1!0.71!10.23!MYBL1;;chr19:19729477..19729542,-!p1@PBX4!0.71!9.51!PBX4;;chr1:151431811..151431832,-!p3@POGZ!0.71!7.18!POGZ;;chr19:31840130..31840160,-!p2@TSHZ3!0.71!6.82!TSHZ3;;chr7:1577111..1577132,+!p4@MAFK!0.71!4.66!MAFK;;chr2:176994408..176994492,+!p1@HOXD8!0.71!4.13!HOXD8;;chr5:137804484..137804498,+!p2@EGR1!0.70!17.94!EGR1;;chr14:73360799..73360817,-!p1@DPF3!0.70!15.43!DPF3;;chr21:36259445..36259519,-!p4@RUNX1!0.70!12.38!RUNX1;;chr9:3525727..3525828,-!p2@RFX3!0.70!11.12!RFX3;;chr2:71127699..71127744,+!p1@VAX2!0.70!8.97!VAX2;;chr2:208031943..208031978,-!p5@KLF7!0.70!5.56!KLF7;;chr11:65687222..65687240,+!p7@DRAP1!0.70!5.38!DRAP1;;chr5:137801160..137801176,+!p1@EGR1!0.69!443.81!EGR1;;chr9:99180617..99180658,-!p1@ZNF367!0.69!9.33!ZNF367;;chr2:200323414..200323455,-!p1@SATB2!0.69!9.15!SATB2;;chr15:37391588..37391604,-!p11@MEIS2!0.69!5.20!MEIS2;;chr6:10412392..10412409,-!p4@TFAP2A!0.69!4.48!TFAP2A;;chr7:27224842..27224872,-!p1@HOXA11!0.69!3.95!HOXA11;;chr2:172967242..172967265,-!p2@DLX2!0.69!3.95!DLX2;;chr4:111558135..111558198,-!p2@PITX2!0.69!3.95!PITX2;;chr12:54410948..54410992,+!p3@HOXC5!0.69!3.95!HOXC5;;chr2:239756671..239756732,+!p1@TWIST2!0.68!13.45!TWIST2;;chr8:60031619..60031676,-!p1@TOX!0.68!8.97!TOX;;chr5:158527139..158527161,-!p5@EBF1!0.68!3.77!EBF1;;chr7:27205106..27205134,-!p2@HOXA9!0.68!3.77!HOXA9;;chr2:177001366..177001379,+!p4@HOXD3!0.68!3.77!HOXD3;;chr1:119530493..119530572,-!p1@TBX15!0.68!3.77!TBX15;;chr1:44513995..44514031,+!p1@KLF17!0.68!3.77!KLF17;;chr16:31076332..31076388,-!p3@ZNF668!0.68!3.77!ZNF668;;chr18:52969674..52969685,-!p24@TCF4!0.68!3.77!TCF4;;chr10:119302645..119302712,+!p3@EMX2!0.68!3.77!EMX2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.67!19.19!TAL1;;chr12:66218378..66218401,+!p6@HMGA2!0.66!5.92!HMGA2;;chr5:158526459..158526481,-!p2@EBF1!0.66!5.02!EBF1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.66!3.59!RUNX1T1;;chr1:119530706..119530736,-!p3@TBX15!0.66!3.59!TBX15;;chr1:170632137..170632172,+!p10@PRRX1!0.66!3.59!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.66!3.59!DLX1;;chr15:66995062..66995065,+!p8@SMAD6!0.66!3.59!SMAD6;;chrX:128657457..128657475,-!p1@SMARCA1!0.65!46.64!SMARCA1;;chr12:80085255..80085284,-!p9@PAWR!0.65!5.38!PAWR;;chr16:54964740..54964789,+!p1@IRX5!0.65!5.38!IRX5;;chr11:46299186..46299195,+!p3@CREB3L1!0.65!3.95!CREB3L1;;chr19:23433144..23433204,-!p1@ZNF724P!0.64!17.58!ZNF724P;;chr21:36421535..36421610,-!p2@RUNX1!0.64!13.63!RUNX1;;chr1:200379104..200379128,-!p2@ZNF281!0.64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| |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.85!710.74!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.81!170.24!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.74!54.18!HOXC5;;chr9:132427883..132427951,+!p2@PRRX2!1.58!36.77!PRRX2;;chr15:57511609..57511651,+!p2@TCF12!1.46!45.56!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.46!31.21!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!1.42!112.48!FOXD1;;chr2:102091566..102091581,-!p1@RFX8!1.41!24.76!RFX8;;chr1:197886421..197886432,+!p2@LHX9!1.38!22.96!LHX9;;chr2:177001290..177001315,+!p1@HOXD3!1.36!21.71!HOXD3;;chr8:67525443..67525459,-!p2@MYBL1!1.35!31.39!MYBL1;;chr15:37392534..37392562,-!p10@MEIS2!1.33!22.42!MEIS2;;chr11:46299539..46299620,+!p2@CREB3L1!1.31!32.83!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.27!24.04!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!1.25!16.68!EMX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.24!83.95!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!1.23!15.97!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.22!15.79!RUNX1T1;;chr1:197886665..197886732,+!p3@LHX9!1.22!15.43!LHX9;;chr9:132427972..132428056,+!p1@PRRX2!1.19!18.84!PRRX2;;chr1:170633262..170633285,+!p3@PRRX1!1.16!15.43!PRRX1;;chr15:37392616..37392638,-!p2@MEIS2!1.15!40.54!MEIS2;;chr2:176973498..176973524,+!p1@HOXD10!1.15!13.27!HOXD10;;chr7:44143925..44143970,+!p1@AEBP1!1.14!285.23!AEBP1;;chr7:44143978..44143989,+!p2@AEBP1!1.14!23.68!AEBP1;;chr15:37392703..37392717,-!p8@MEIS2!1.13!17.76!MEIS2;;chr15:37392724..37392757,-!p1@MEIS2!1.11!54.71!MEIS2;;chr21:36260773..36260804,-!p7@RUNX1!1.11!16.15!RUNX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.10!14.17!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!1.08!67.27!ID4;;chr1:170632959..170632987,+!p4@PRRX1!1.08!12.20!PRRX1;;chr2:176969097..176969109,+!p3@HOXD11!1.08!11.12!HOXD11;;chr20:50179368..50179392,-!p2@NFATC2!1.07!13.99!NFATC2;;chr5:321810..321877,+!p1@AHRR!1.06!33.73!AHRR;;chr5:158526917..158526932,-!p1@EBF1!1.03!24.40!EBF1;;chr2:172949484..172949522,+!p1@DLX1!1.03!9.69!DLX1;;chr2:176969228..176969260,+!p1@HOXD11!1.03!9.69!HOXD11;;chr10:63809106..63809127,+!p1@ARID5B!1.01!126.47!ARID5B;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.95!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!1.01!13.45!SATB2;;chr15:37392576..37392589,-!p12@MEIS2!1.00!11.12!MEIS2;;chr11:44331576..44331650,-!p1@ALX4!1.00!8.97!ALX4;;chr4:81118647..81118666,+!p1@PRDM8!0.99!11.66!PRDM8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.98!8.61!HOXC5;;chr8:93074848..93074871,-!p3@RUNX1T1!0.98!8.61!RUNX1T1;;chr20:55204351..55204377,+!p1@TFAP2C!0.97!10.58!TFAP2C;;chr10:28034739..28034756,-!p1@MKX!0.97!8.43!MKX;;chr4:174451370..174451387,-!p1@HAND2!0.97!8.43!HAND2;;chr3:147111231..147111281,+!p3@ZIC1!0.97!8.25!ZIC1;;chr5:3595977..3595999,+!p1@IRX1!0.95!7.89!IRX1;;chr6:85474198..85474212,-!p3@TBX18!0.95!7.89!TBX18;;chr7:27192185..27192209,-!p1@HOXA3!0.95!7.89!HOXA3;;chrX:591524..591527,+!p1@SHOX!0.95!7.89!SHOX;;chr12:124873357..124873401,-!p1@NCOR2!0.94!93.10!NCOR2;;chr15:37390850..37390909,-!p3@MEIS2!0.94!15.61!MEIS2;;chr6:85474299..85474324,-!p1@TBX18!0.94!14.17!TBX18;;chr2:223163706..223163730,-!p1@PAX3!0.94!7.71!PAX3;;chr14:61116183..61116208,-!p1@SIX1!0.93!29.42!SIX1;;chr4:95128841..95128865,+!p4@SMARCAD1!0.92!15.61!SMARCAD1;;chr2:102091144..102091183,-!p2@RFX8!0.92!7.35!RFX8;;chr2:19558373..19558392,-!p1@OSR1!0.91!20.09!OSR1;;chr7:44143997..44144008,+!p3@AEBP1!0.91!9.15!AEBP1;;chr3:157823517..157823562,-!p1@SHOX2!0.91!7.71!SHOX2;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.18!NPAS1;;chr10:114710244..114710257,+!p3@TCF7L2!0.90!19.73!TCF7L2;;chr7:27205136..27205164,-!p1@HOXA9!0.90!7.00!HOXA9;;chr3:114343768..114343822,-!p1@ZBTB20!0.89!30.86!ZBTB20;;chr14:24837368..24837401,+!p1@NFATC4!0.89!16.50!NFATC4;;chr5:72744445..72744466,-!p2@FOXD1!0.89!11.66!FOXD1;;chr1:170632723..170632739,+!p8@PRRX1!0.89!6.82!PRRX1;;chr12:114843940..114843955,-!p2@TBX5!0.89!6.82!TBX5;;chr12:54402745..54402788,+!p1@HOXC8!0.89!6.82!HOXC8;;chr19:13134772..13134822,+!p2@NFIX!0.88!9.87!NFIX;;chr1:170632477..170632506,+!p6@PRRX1!0.88!6.64!PRRX1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.87!27.98!LRRFIP2;;chr6:10412600..10412637,-!p1@TFAP2A!0.87!10.94!TFAP2A;;chr1:170632250..170632277,+!p7@PRRX1!0.87!6.46!PRRX1;;chr11:46316699..46316719,+!p10@CREB3L1!0.87!6.46!CREB3L1;;chr2:121493425..121493474,+!p1@GLI2!0.86!14.17!GLI2;;chr15:37390482..37390572,-!p7@MEIS2!0.86!8.79!MEIS2;;chr5:72743793..72743855,-!p4@FOXD1!0.86!7.35!FOXD1;;chr3:147111198..147111225,+!p4@ZIC1!0.86!6.28!ZIC1;;chr19:45971246..45971265,+!p1@FOSB!0.85!120.19!FOSB;;chr1:170633058..170633084,+!p5@PRRX1!0.85!6.10!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.85!6.10!ZBED1;;chr12:80085061..80085119,-!p6@PAWR!0.84!9.69!PAWR;;chr15:37392593..37392607,-!p13@MEIS2!0.84!7.18!MEIS2;;chr3:25470156..25470227,+!p2@RARB!0.84!5.92!RARB;;chr12:53614115..53614154,-!p1@RARG!0.83!33.01!RARG;;chr2:172967276..172967296,-!p3@DLX2!0.82!5.56!DLX2;;chr2:121493492..121493537,+!p2@GLI2!0.81!9.51!GLI2;;chr18:53068911..53068935,-!p4@TCF4!0.81!6.28!TCF4;;chr6:144329384..144329405,-!p1@PLAGL1!0.80!67.63!PLAGL1;;chr11:65686802..65686818,+!p6@DRAP1!0.80!9.69!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.80!8.43!ZBTB38;;chr3:147127142..147127168,+!p1@ZIC1!0.80!5.38!ZIC1;;chr5:158527104..158527135,-!p4@EBF1!0.80!5.38!EBF1;;chr16:51185172..51185197,-!p1@SALL1!0.80!5.38!SALL1;;chr15:37390374..37390422,-!p9@MEIS2!0.79!6.46!MEIS2;;chr2:176969124..176969155,+!p5@HOXD11!0.79!5.20!HOXD11;;chr14:62162258..62162269,+!p2@HIF1A!0.78!53.46!HIF1A;;chr12:115121962..115121987,-!p1@TBX3!0.78!46.10!TBX3;;chr11:65686732..65686756,+!p2@DRAP1!0.78!23.14!DRAP1;;chr19:22817119..22817145,+!p1@ZNF492!0.78!8.79!ZNF492;;chr4:174450089..174450153,-!p2@HAND2!0.78!5.02!HAND2;;chr5:2751785..2751808,-!p2@IRX2!0.78!5.02!IRX2;;chr1:170632439..170632465,+!p11@PRRX1!0.78!5.02!PRRX1;;chr12:124873852..124873881,-!p3@NCOR2!0.77!32.29!NCOR2;;chr11:12696071..12696086,+!p3@TEAD1!0.77!6.64!TEAD1;;chr15:83953397..83953425,-!p1@BNC1!0.77!5.74!BNC1;;chr2:102091514..102091528,-!p6@RFX8!0.77!4.84!RFX8;;chr2:177001336..177001357,+!p2@HOXD3!0.77!4.84!HOXD3;;chr7:150945754..150945789,-!p2@SMARCD3!0.76!15.79!SMARCD3;;chr3:71630980..71631110,-!p3@FOXP1!0.75!17.76!FOXP1;;chr12:66218255..66218304,+!p3@HMGA2!0.75!13.45!HMGA2;;chr10:63809077..63809089,+!p5@ARID5B!0.75!10.76!ARID5B;;chr6:85473156..85473210,-!p2@TBX18!0.75!5.74!TBX18;;chr2:85981107..85981120,+!p3@ATOH8!0.75!4.66!ATOH8;;chr10:63661437..63661465,+!p2@ARID5B!0.74!95.61!ARID5B;;chr5:72744562..72744573,-!p3@FOXD1!0.74!5.74!FOXD1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.74!4.84!GLIS1;;chr20:55205825..55205847,+!p2@TFAP2C!0.74!4.48!TFAP2C;;chr6:134210243..134210257,+!p1@TCF21!0.74!4.48!TCF21;;chr13:37494275..37494304,-!p2@SMAD9!0.74!4.48!SMAD9;;chr10:63809013..63809041,+!p3@ARID5B!0.73!26.91!ARID5B;;chr18:22932080..22932170,-!p1@ZNF521!0.73!20.27!ZNF521;;chr16:73092898..73092931,-!p1@ZFHX3!0.73!18.66!ZFHX3;;chr7:137686763..137686784,-!p5@CREB3L2!0.73!8.07!CREB3L2;;chr5:43067636..43067674,+!p6@ZNF131!0.73!6.10!ZNF131;;chr19:16435625..16435682,+!p1@KLF2!0.72!154.45!KLF2;;chr1:158979792..158979814,+!p2@IFI16!0.72!45.74!IFI16;;chr5:176738887..176738934,-!p1@MXD3!0.72!31.93!MXD3;;chr7:27213893..27213954,-!p1@HOXA10!0.72!4.31!HOXA10;;chr8:93115584..93115642,-!p5@RUNX1T1!0.72!4.31!RUNX1T1;;chr19:9609272..9609297,-!p1@ZNF560!0.72!4.31!ZNF560;;chr12:114845810..114845824,-!p1@TBX5!0.72!4.31!TBX5;;chr2:176969179..176969226,+!p2@HOXD11!0.72!4.31!HOXD11;;chr17:41277372..41277418,-!p1@BRCA1!0.71!16.68!BRCA1;;chr8:67525473..67525518,-!p1@MYBL1!0.71!10.23!MYBL1;;chr19:19729477..19729542,-!p1@PBX4!0.71!9.51!PBX4;;chr1:151431811..151431832,-!p3@POGZ!0.71!7.18!POGZ;;chr19:31840130..31840160,-!p2@TSHZ3!0.71!6.82!TSHZ3;;chr7:1577111..1577132,+!p4@MAFK!0.71!4.66!MAFK;;chr2:176994408..176994492,+!p1@HOXD8!0.71!4.13!HOXD8;;chr5:137804484..137804498,+!p2@EGR1!0.70!17.94!EGR1;;chr14:73360799..73360817,-!p1@DPF3!0.70!15.43!DPF3;;chr21:36259445..36259519,-!p4@RUNX1!0.70!12.38!RUNX1;;chr9:3525727..3525828,-!p2@RFX3!0.70!11.12!RFX3;;chr2:71127699..71127744,+!p1@VAX2!0.70!8.97!VAX2;;chr2:208031943..208031978,-!p5@KLF7!0.70!5.56!KLF7;;chr11:65687222..65687240,+!p7@DRAP1!0.70!5.38!DRAP1;;chr5:137801160..137801176,+!p1@EGR1!0.69!443.81!EGR1;;chr9:99180617..99180658,-!p1@ZNF367!0.69!9.33!ZNF367;;chr2:200323414..200323455,-!p1@SATB2!0.69!9.15!SATB2;;chr15:37391588..37391604,-!p11@MEIS2!0.69!5.20!MEIS2;;chr6:10412392..10412409,-!p4@TFAP2A!0.69!4.48!TFAP2A;;chr7:27224842..27224872,-!p1@HOXA11!0.69!3.95!HOXA11;;chr2:172967242..172967265,-!p2@DLX2!0.69!3.95!DLX2;;chr4:111558135..111558198,-!p2@PITX2!0.69!3.95!PITX2;;chr12:54410948..54410992,+!p3@HOXC5!0.69!3.95!HOXC5;;chr2:239756671..239756732,+!p1@TWIST2!0.68!13.45!TWIST2;;chr8:60031619..60031676,-!p1@TOX!0.68!8.97!TOX;;chr5:158527139..158527161,-!p5@EBF1!0.68!3.77!EBF1;;chr7:27205106..27205134,-!p2@HOXA9!0.68!3.77!HOXA9;;chr2:177001366..177001379,+!p4@HOXD3!0.68!3.77!HOXD3;;chr1:119530493..119530572,-!p1@TBX15!0.68!3.77!TBX15;;chr1:44513995..44514031,+!p1@KLF17!0.68!3.77!KLF17;;chr16:31076332..31076388,-!p3@ZNF668!0.68!3.77!ZNF668;;chr18:52969674..52969685,-!p24@TCF4!0.68!3.77!TCF4;;chr10:119302645..119302712,+!p3@EMX2!0.68!3.77!EMX2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.67!19.19!TAL1;;chr12:66218378..66218401,+!p6@HMGA2!0.66!5.92!HMGA2;;chr5:158526459..158526481,-!p2@EBF1!0.66!5.02!EBF1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.66!3.59!RUNX1T1;;chr1:119530706..119530736,-!p3@TBX15!0.66!3.59!TBX15;;chr1:170632137..170632172,+!p10@PRRX1!0.66!3.59!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.66!3.59!DLX1;;chr15:66995062..66995065,+!p8@SMAD6!0.66!3.59!SMAD6;;chrX:128657457..128657475,-!p1@SMARCA1!0.65!46.64!SMARCA1;;chr12:80085255..80085284,-!p9@PAWR!0.65!5.38!PAWR;;chr16:54964740..54964789,+!p1@IRX5!0.65!5.38!IRX5;;chr11:46299186..46299195,+!p3@CREB3L1!0.65!3.95!CREB3L1;;chr19:23433144..23433204,-!p1@ZNF724P!0.64!17.58!ZNF724P;;chr21:36421535..36421610,-!p2@RUNX1!0.64!13.63!RUNX1;;chr1:200379104..200379128,-!p2@ZNF281!0.64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| ||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12405.14329-155E9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12405.14329-155E9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12405.14329-155E9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12405.14329-155E9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12405.14329-155E9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14329-155E9 | |id=FF:14329-155E9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000667 | ||
|is_obsolete= | |||
|library_id=CNhs12405 | |||
|library_id_phase_based=2:CNhs12405 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14329 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14329 | |||
|name=Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction) | |name=Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12405,LSID914,release011,COMPLETED | |profile_hcage=CNhs12405,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0271691171422508,0,-0.27483329820609,0.728905407439922,0,0,0,0,0,0,0,0,0,0,0,0.187004028169722,0,-0.0201740974042924,0,0.272743547402567,0,0,0,1.12233062993166,0,0,0.365722699681122,0,0,0,0,0,0,0,0,0,0,0.133148912944135,0,-0.139872508965399,0.446210291375074,0.133148912944135,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.133148912944135,0,0,0,0.289527486595029,0,0,0.469782125143494,0.0716573069394021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524008731116469,0.0358286534697011,0,0,0,0,0,0,0,0,0,-0.0584468268118252,0.184069946422546,0,0.473236684860705,0.0358286534697011,0.317298013376124,0.319354411384734,0.578805686270806,0,0,0,0,0,0,0.0716573069394021,0,0,0,0,0.0663715255252339,0,0,0,0,0,0.164983155670909,0,0,0,-0.079112335990984,-0.15957618561978,0,0,0.317298013376124,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.319354411384734,0,0.317298013376124,0.0716573069394021,0,0.133148912944135,0,0,0,0.473236684860705,0,0,0.106107749197307,0.0358286534697011,0.0245930707079763,-0.0718578355840698,0.0358286534697011,0,0.192342498783563,0,0,0,0.243278629825236,0.317298013376124,0.234911548853766,0.234911548853766,0.187004028169722,0,0.84645228556343,0,-0.0504125515893149,0.109335845436634,0.133148912944135,0.0716573069394021,0,0.093502014084861,0.771632756781804,0,0.262053911139939,0.953161365915295,0,0,0,0,-0.0862104384353736,0,-0.120879483793741,0.439993330863323,0.0132999607509595,0.0560550182978395,0.0159448101582201,0,0,0,-0.160847419070465,-0.0606503278266812,0,0,0.583472709038258,0.0417555271268779,0,0,1.49376452027176,0,-0.483982320995286,-0.0246110884271693,0,0.175499992473231,0,0,0.0716573069394021,0,0,0.0716573069394021,0,0,0,0,0,0.153464321690307,0.195724902507772,0.366791920410993,0,0.234911548853766,0,-0.405388020556479,0.0716573069394021,0,-0.373286155956567,-0.0826279483151384,0.0344923119327056,-0.119259540015823,0,-0.230732420070511,-0.10905407454938,-0.170252079794008,0.0796552768295071,0.351277440088846,0.256228571825227,0,-0.217347142274016,0.456860866597634,0,-0.339145740101058,0.0634908570947021,0.173373747435351,0.0637956131836037,0,0,0,0.0146625718712609,0,-0.241966223159238,0.314820926154203,0.0300613394867804,0.209552010669558,-0.0388696275556087,0.0233111537806352,0.22120339696529,0.0321247784827315,-0.070916605058961,0,0.0842288485565875,0,0.0716573069394021,-0.00695029900929245,-0.0471330467891472,-0.468614093731198,-0.0931126739919383,0,-0.296973433641258,-0.0683442610773682,0.033859171319198,-0.191518742986138,-0.377845452603484,0,0.0716573069394021,-0.105540546010707,0.0716573069394021,0,0,0,0,0.0151111910353625,0.0679225378985615,0.00205598729822148,0,0.115271529495185,0.0358286534697011,0.0221054492954098,0,-0.0641383142894357,-0.202170761610805,0,-0.193008976775472,0,-0.133947172321165,-0.0892471880193855,-0.0912215470453042,0.0508418794689678,-0.0584468268118252,-0.123057252847003,0.00139469845565554,-0.0495252597889959,0.319615551439595,-0.0544269928170076,0.606177501069163,0,0.271026286903397,-0.23328784024645,-0.0868769217512497,0.125979334015131,0.0824728883375446,0.568410260383727,0,-0.0228736300601899,0,0.0130632116411994,-0.223135738097116,-0.306140461636551,-0.17885971986366,0,-0.105433562450493,-0.221005185417383,0,-0.0979416274245938,0,0,0.127688383493355,0.174927978066316,-0.175821774394888,0.367678565186638,0,-0.0102737992809664,0,0.0716573069394021,-0.221099008944177,0.0818219756117357,0,0.0768919607451785,0.0524008731116469,-0.158005749820221,0.16208439339306,0,0,0.146852391309266,0,0.417389762622441,-0.0604409690128972,0.133148912944135,-0.0742962291535003,0.269387157699985,0.042343378717471,0.361889124328398,0,0,0.100527700862818,0,-0.0172525846632784,0,0.278055466827994,0.0523155987972577,0,0,0,0.133148912944135,0.195450638014928,0.0716573069394021,0,0,0,0,0,0.0716573069394021,-0.0382828559575732,0.0625564324059927,0.133148912944135,-0.108287317310498,0,0.133148912944135,0,0,0.187004028169722,0.0531410757168302,0,0,1.25270640852027,0.070736865780953,0.010131497267715,0,0,0.0358286534697011,0,0.0623320642745194,0.458367225230319,0.133148912944135,-0.0602053995582296,0,0,0,0,0.0470079231549239,0,0,0.0358286534697011,0.0665744564720675,-0.057730457053664,-0.0386218971760426,0,0,0,0.97060734437189,0,0,0,0.0808907858109073,0.253782881607404,0,0.234911548853766,0.578872918658942,0.0679100095570291,-0.0500578621700654,-0.0815818795468414,0.0115042143379866,-0.0433644912077394,0.136493326758102,0.101254192886801,0,0,-0.261347131789888,0,0.0680193946378141,0.170037215533802,0,0.187004028169722,0.207819832758028,0,0,0,0,0.0716573069394021,0.0716573069394021,-0.0273104842300332,0.362357071472477,0,0.0309965433145362,0,0,0,0,0.0716573069394021,0,0,0.133148912944135,-0.212111748258868,0.0409248562856248,0.133148912944135,0,0,0,0,0,0,0.323046143693322,-0.359649861846772,0.0358286534697011,0,0.0716573069394021,0,0,0,0,0,0.605679048016969,0,0,0.187004028169722,0,0,0.289527486595029,0,0,0,0,1.17975534805185,0,0,-0.277362132193514,0,0,0,0,0,0,0,0.00036576347777574,0,0,0,0.0358286534697011,0,-0.123319086035448,-0.231530134380584,0,0.133148912944135,0,0,0,0,0,-0.27483329820609,0,0.278055466827994,0,0,-0.0422270667695751,0,0,0,0.393882904670828,0,-0.0271691171422508,0,0.0716573069394021,0,0,0,0.0716573069394021,0.0358286534697011,0,0,0,0,0,0,0,0,0,0,0.0358286534697011,0,0,0,0.701441772317287,0.10455508877434,0.186329483544677,-0.0326417264981161,0,0,0.150708920842652,0,0,0,0,0,0,0.062161590056334,0.0716573069394021,0,0,0,0,0,0,0.093502014084861,0,0,0,0,0,0,0,0.0058035120216234,0,0,0,0,0,0,0,0,0.139027733413997,0.00097060966461267,0,0,0,0,0.187004028169722,0,0,1.12233062993166,0,0.0358286534697011,-0.0920328098005262,0,0,0,0.00811140793222857,0.239553433488723,0,0.372152662002453,0.778259184691157,-0.00119621617160926,0,0,0,0.0121888839896126,0.133148912944135,0,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| |||
|rna_box=155 | |rna_box=155 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 54: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.55E+11 | ||
|rna_weight_ug=30.54105 | |rna_weight_ug=30.54105 | ||
|sample_age=2 year old child | |sample_age=2 year old child | ||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition=nuclear RNA | |sample_experimental_condition=nuclear RNA | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.12211532066963e-233!GO:0043226;organelle;9.77700147192248e-196!GO:0043229;intracellular organelle;3.00522325517717e-195!GO:0043231;intracellular membrane-bound organelle;1.37897818132846e-187!GO:0043227;membrane-bound organelle;2.27106610417378e-187!GO:0005737;cytoplasm;1.5933890075032e-151!GO:0044422;organelle part;3.36843405059187e-134!GO:0044446;intracellular organelle part;1.22198053691957e-132!GO:0044444;cytoplasmic part;8.26511195034335e-100!GO:0005634;nucleus;4.37918412544004e-95!GO:0043170;macromolecule metabolic process;5.4295470815152e-93!GO:0044238;primary metabolic process;3.57773671389439e-92!GO:0044237;cellular metabolic process;1.6494934987873e-87!GO:0005515;protein binding;1.25168527092142e-85!GO:0032991;macromolecular complex;6.62974445590722e-80!GO:0044428;nuclear part;1.76978300698078e-77!GO:0043233;organelle lumen;4.28170220920907e-66!GO:0031974;membrane-enclosed lumen;4.28170220920907e-66!GO:0003723;RNA binding;2.17870279612044e-61!GO:0043283;biopolymer metabolic process;3.27726500591206e-60!GO:0016043;cellular component organization and biogenesis;1.60732398592876e-58!GO:0030529;ribonucleoprotein complex;1.43363021249469e-56!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.1308571923255e-52!GO:0031981;nuclear lumen;1.90134919000827e-46!GO:0006396;RNA processing;2.20570101732814e-45!GO:0010467;gene expression;8.91463644426373e-45!GO:0019538;protein metabolic process;1.01505232496381e-44!GO:0043234;protein complex;1.35501008840977e-43!GO:0033036;macromolecule localization;2.28276276385497e-41!GO:0015031;protein transport;8.916709638927e-41!GO:0006996;organelle organization and biogenesis;3.12487074536313e-40!GO:0046907;intracellular transport;1.45667540916517e-38!GO:0031090;organelle membrane;2.3931174816527e-38!GO:0043228;non-membrane-bound organelle;2.84243644924721e-38!GO:0043232;intracellular non-membrane-bound organelle;2.84243644924721e-38!GO:0044260;cellular macromolecule metabolic process;3.59277054867751e-38!GO:0016071;mRNA metabolic process;9.54771117069825e-38!GO:0044267;cellular protein metabolic process;1.07368785867776e-37!GO:0008104;protein localization;1.27026357554411e-37!GO:0045184;establishment of protein localization;8.92382695426152e-37!GO:0006259;DNA metabolic process;1.38879203191971e-36!GO:0003676;nucleic acid binding;2.07994660637903e-33!GO:0000166;nucleotide binding;5.17330542809541e-33!GO:0008380;RNA splicing;6.31956534663093e-33!GO:0005739;mitochondrion;6.99699234098557e-33!GO:0007049;cell cycle;1.89582295673716e-32!GO:0006397;mRNA processing;1.96588373827605e-32!GO:0065003;macromolecular complex assembly;7.32882720935381e-31!GO:0006412;translation;1.50708785344975e-30!GO:0006886;intracellular protein transport;2.35444777512864e-30!GO:0005654;nucleoplasm;2.82640840087033e-29!GO:0022607;cellular component assembly;3.88639354722279e-29!GO:0005829;cytosol;1.6081094232837e-27!GO:0016070;RNA metabolic process;1.77363807040979e-27!GO:0031967;organelle envelope;1.97932077620315e-27!GO:0031975;envelope;3.06801551942329e-27!GO:0005840;ribosome;1.68675364233998e-26!GO:0022402;cell cycle process;5.62196575416688e-26!GO:0051649;establishment of cellular localization;3.50350962137859e-25!GO:0051641;cellular localization;3.55843214649403e-25!GO:0000278;mitotic cell cycle;1.37921011555355e-24!GO:0009059;macromolecule biosynthetic process;3.68465590671477e-24!GO:0009058;biosynthetic process;6.4906152929634e-24!GO:0044451;nucleoplasm part;1.02982264156865e-23!GO:0032553;ribonucleotide binding;1.16736779294338e-23!GO:0032555;purine ribonucleotide binding;1.16736779294338e-23!GO:0017076;purine nucleotide binding;1.23322133963922e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.49742158546787e-23!GO:0016462;pyrophosphatase activity;1.79279725321387e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.95382075596888e-23!GO:0005681;spliceosome;2.96923181661269e-23!GO:0005524;ATP binding;3.45297863719345e-23!GO:0017111;nucleoside-triphosphatase activity;4.36054001931823e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;4.36054001931823e-23!GO:0032559;adenyl ribonucleotide binding;1.81620682553094e-22!GO:0003735;structural constituent of ribosome;1.94674203590538e-22!GO:0044429;mitochondrial part;2.75991288192085e-22!GO:0030554;adenyl nucleotide binding;3.73497766468433e-22!GO:0044249;cellular biosynthetic process;6.92743636534783e-22!GO:0033279;ribosomal subunit;4.04752733463426e-21!GO:0006974;response to DNA damage stimulus;8.09425405678563e-21!GO:0000087;M phase of mitotic cell cycle;5.13773649654278e-20!GO:0007067;mitosis;8.60765068769092e-20!GO:0048770;pigment granule;1.02183435360575e-19!GO:0042470;melanosome;1.02183435360575e-19!GO:0016874;ligase activity;1.02397258388664e-19!GO:0022403;cell cycle phase;1.26796876960797e-19!GO:0012505;endomembrane system;2.03916128456538e-19!GO:0005694;chromosome;3.26002554908001e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.37970072640542e-18!GO:0005783;endoplasmic reticulum;6.03293768599558e-18!GO:0051301;cell division;1.61520090155395e-17!GO:0051276;chromosome organization and biogenesis;2.58364322928975e-17!GO:0006281;DNA repair;2.72503028512838e-17!GO:0008134;transcription factor binding;5.05573347262778e-17!GO:0000279;M phase;7.63887106343761e-17!GO:0006457;protein folding;9.39930093137826e-17!GO:0044427;chromosomal part;5.5245975411943e-16!GO:0005730;nucleolus;8.12753392013169e-16!GO:0048193;Golgi vesicle transport;1.86217265031349e-15!GO:0005794;Golgi apparatus;2.03043038136452e-15!GO:0004386;helicase activity;2.2372596673953e-15!GO:0050794;regulation of cellular process;2.36228968080357e-15!GO:0006260;DNA replication;2.46951245624276e-15!GO:0044432;endoplasmic reticulum part;3.02180902309362e-15!GO:0005635;nuclear envelope;5.03330636586609e-15!GO:0006512;ubiquitin cycle;6.2818232650803e-15!GO:0031965;nuclear membrane;9.45718296778284e-15!GO:0009719;response to endogenous stimulus;1.19511482023365e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.39450776825518e-14!GO:0043285;biopolymer catabolic process;1.73521787001142e-14!GO:0044265;cellular macromolecule catabolic process;2.11806034789768e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.72304474617072e-14!GO:0016887;ATPase activity;2.86681901232736e-14!GO:0019941;modification-dependent protein catabolic process;2.94626839704263e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.94626839704263e-14!GO:0044257;cellular protein catabolic process;3.63225324043508e-14!GO:0006605;protein targeting;3.63653571918051e-14!GO:0042623;ATPase activity, coupled;3.88966120579354e-14!GO:0044445;cytosolic part;4.92237077047309e-14!GO:0015630;microtubule cytoskeleton;6.63780705904229e-14!GO:0005740;mitochondrial envelope;6.66602791476689e-14!GO:0044453;nuclear membrane part;1.49069318640226e-13!GO:0019866;organelle inner membrane;1.88116361092321e-13!GO:0030163;protein catabolic process;2.03750169012544e-13!GO:0043412;biopolymer modification;2.13542773368378e-13!GO:0031966;mitochondrial membrane;2.57935072624852e-13!GO:0009057;macromolecule catabolic process;3.09766671700528e-13!GO:0022618;protein-RNA complex assembly;3.57532626494567e-13!GO:0006119;oxidative phosphorylation;3.9141403084852e-13!GO:0051726;regulation of cell cycle;4.70797652132723e-13!GO:0000074;regulation of progression through cell cycle;5.69064888561086e-13!GO:0008135;translation factor activity, nucleic acid binding;5.7417920172202e-13!GO:0000502;proteasome complex (sensu Eukaryota);6.36958148701291e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;9.00077774660756e-13!GO:0051082;unfolded protein binding;9.31287968358944e-13!GO:0005793;ER-Golgi intermediate compartment;1.27210799676589e-12!GO:0016192;vesicle-mediated transport;1.75894341838353e-12!GO:0006323;DNA packaging;3.10502110797861e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;3.2999763072867e-12!GO:0000375;RNA splicing, via transesterification reactions;3.2999763072867e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.2999763072867e-12!GO:0016604;nuclear body;4.57487899142017e-12!GO:0003712;transcription cofactor activity;4.58125907683817e-12!GO:0008026;ATP-dependent helicase activity;4.64236105923079e-12!GO:0006913;nucleocytoplasmic transport;8.30038989490494e-12!GO:0006464;protein modification process;1.08086696440299e-11!GO:0005743;mitochondrial inner membrane;1.14895624992681e-11!GO:0051169;nuclear transport;2.05967496118925e-11!GO:0015934;large ribosomal subunit;3.4237065536356e-11!GO:0006461;protein complex assembly;3.42973544905642e-11!GO:0006366;transcription from RNA polymerase II promoter;4.37528180897308e-11!GO:0043687;post-translational protein modification;4.43813613201115e-11!GO:0031980;mitochondrial lumen;5.98707643165588e-11!GO:0005759;mitochondrial matrix;5.98707643165588e-11!GO:0050789;regulation of biological process;6.30980469473776e-11!GO:0016607;nuclear speck;9.23548006448472e-11!GO:0005643;nuclear pore;1.23177881640571e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.45186617938006e-10!GO:0015935;small ribosomal subunit;1.51822467383091e-10!GO:0048523;negative regulation of cellular process;1.76385923122529e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.88459668394202e-10!GO:0004812;aminoacyl-tRNA ligase activity;1.88459668394202e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.88459668394202e-10!GO:0042254;ribosome biogenesis and assembly;1.91352245476392e-10!GO:0005819;spindle;2.78196777476418e-10!GO:0006399;tRNA metabolic process;2.8461228207253e-10!GO:0044248;cellular catabolic process;3.38585298948331e-10!GO:0043038;amino acid activation;3.71164406998268e-10!GO:0006418;tRNA aminoacylation for protein translation;3.71164406998268e-10!GO:0043039;tRNA aminoacylation;3.71164406998268e-10!GO:0051186;cofactor metabolic process;5.2220543474283e-10!GO:0044455;mitochondrial membrane part;5.55227355117508e-10!GO:0003743;translation initiation factor activity;6.48165738464219e-10!GO:0005789;endoplasmic reticulum membrane;6.9346544062545e-10!GO:0006403;RNA localization;1.41667927035857e-09!GO:0019222;regulation of metabolic process;1.65089356252895e-09!GO:0007010;cytoskeleton organization and biogenesis;1.93537103026769e-09!GO:0050657;nucleic acid transport;2.1772854954172e-09!GO:0051236;establishment of RNA localization;2.1772854954172e-09!GO:0050658;RNA transport;2.1772854954172e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.33952925626266e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.43860618795319e-09!GO:0008565;protein transporter activity;2.5227364850051e-09!GO:0008639;small protein conjugating enzyme activity;4.5138022534524e-09!GO:0004842;ubiquitin-protein ligase activity;5.20178805404101e-09!GO:0005813;centrosome;6.00614979419998e-09!GO:0046930;pore complex;6.17662394715888e-09!GO:0019787;small conjugating protein ligase activity;6.63342413430188e-09!GO:0016568;chromatin modification;7.44629742884945e-09!GO:0006446;regulation of translational initiation;8.08894697763478e-09!GO:0005815;microtubule organizing center;9.37765363700846e-09!GO:0048519;negative regulation of biological process;1.1050878913484e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.11468207693094e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.12842624840353e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.39313792212451e-08!GO:0043566;structure-specific DNA binding;1.71612969187111e-08!GO:0005788;endoplasmic reticulum lumen;2.39228513217354e-08!GO:0012501;programmed cell death;3.1377731226646e-08!GO:0006413;translational initiation;3.57514483958021e-08!GO:0000785;chromatin;3.88151504931479e-08!GO:0005667;transcription factor complex;3.98363197797519e-08!GO:0005746;mitochondrial respiratory chain;4.18653529691876e-08!GO:0006915;apoptosis;5.1720584382293e-08!GO:0006732;coenzyme metabolic process;6.38777456479219e-08!GO:0006333;chromatin assembly or disassembly;6.41750625274165e-08!GO:0065004;protein-DNA complex assembly;6.44938818634887e-08!GO:0051028;mRNA transport;7.36266764608262e-08!GO:0009259;ribonucleotide metabolic process;7.79655906417446e-08!GO:0016881;acid-amino acid ligase activity;8.6133133910031e-08!GO:0017038;protein import;9.64069854492205e-08!GO:0065002;intracellular protein transport across a membrane;9.65195379752088e-08!GO:0007051;spindle organization and biogenesis;1.08374919128125e-07!GO:0031324;negative regulation of cellular metabolic process;1.16241435307999e-07!GO:0006261;DNA-dependent DNA replication;1.27015519222844e-07!GO:0008219;cell death;1.27743897391984e-07!GO:0016265;death;1.27743897391984e-07!GO:0030120;vesicle coat;1.38278593952694e-07!GO:0030662;coated vesicle membrane;1.38278593952694e-07!GO:0050136;NADH dehydrogenase (quinone) activity;1.41654821634527e-07!GO:0003954;NADH dehydrogenase activity;1.41654821634527e-07!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.41654821634527e-07!GO:0000775;chromosome, pericentric region;2.21752989910519e-07!GO:0016564;transcription repressor activity;2.71392177590403e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.71691602186017e-07!GO:0009060;aerobic respiration;2.73994527397263e-07!GO:0016787;hydrolase activity;3.21117082839413e-07!GO:0005768;endosome;3.42389892235932e-07!GO:0003697;single-stranded DNA binding;3.69952762626495e-07!GO:0048475;coated membrane;3.77204515850844e-07!GO:0030117;membrane coat;3.77204515850844e-07!GO:0006163;purine nucleotide metabolic process;4.21419780405767e-07!GO:0045333;cellular respiration;4.68446110590219e-07!GO:0003724;RNA helicase activity;5.16840236380239e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.42408752008423e-07!GO:0031323;regulation of cellular metabolic process;5.96476859485141e-07!GO:0009150;purine ribonucleotide metabolic process;6.26540909712447e-07!GO:0000075;cell cycle checkpoint;6.90407733316237e-07!GO:0009260;ribonucleotide biosynthetic process;7.63077100892325e-07!GO:0065007;biological regulation;7.74923270158117e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.05468922850246e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.44776153181693e-07!GO:0009892;negative regulation of metabolic process;9.14981039833854e-07!GO:0019899;enzyme binding;9.43683642767613e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.03465809202745e-06!GO:0006606;protein import into nucleus;1.2138313618149e-06!GO:0008092;cytoskeletal protein binding;1.24115933186699e-06!GO:0003714;transcription corepressor activity;1.27586718493373e-06!GO:0006164;purine nucleotide biosynthetic process;1.35675292297062e-06!GO:0051170;nuclear import;1.36877758548242e-06!GO:0006099;tricarboxylic acid cycle;1.46047980857281e-06!GO:0046356;acetyl-CoA catabolic process;1.46047980857281e-06!GO:0042775;organelle ATP synthesis coupled electron transport;1.46047980857281e-06!GO:0042773;ATP synthesis coupled electron transport;1.46047980857281e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.56823303586352e-06!GO:0006350;transcription;1.77768002724674e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.92238829372404e-06!GO:0044431;Golgi apparatus part;1.97185632970121e-06!GO:0030964;NADH dehydrogenase complex (quinone);2.005149383452e-06!GO:0045271;respiratory chain complex I;2.005149383452e-06!GO:0005747;mitochondrial respiratory chain complex I;2.005149383452e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.15154642886496e-06!GO:0051329;interphase of mitotic cell cycle;2.22225287033954e-06!GO:0043623;cellular protein complex assembly;2.45443159528421e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.45443159528421e-06!GO:0009109;coenzyme catabolic process;2.75842357937238e-06!GO:0045786;negative regulation of progression through cell cycle;2.97552900976015e-06!GO:0051325;interphase;3.01097008956463e-06!GO:0051187;cofactor catabolic process;3.01097008956463e-06!GO:0008094;DNA-dependent ATPase activity;3.34533600429134e-06!GO:0006364;rRNA processing;3.6850029687562e-06!GO:0009199;ribonucleoside triphosphate metabolic process;3.79161554109829e-06!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.80353594320273e-06!GO:0006793;phosphorus metabolic process;3.97854138882287e-06!GO:0006796;phosphate metabolic process;3.97854138882287e-06!GO:0005874;microtubule;3.98590223714414e-06!GO:0009056;catabolic process;4.04177216832221e-06!GO:0006084;acetyl-CoA metabolic process;4.06980039745669e-06!GO:0015986;ATP synthesis coupled proton transport;4.20603437347559e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.20603437347559e-06!GO:0003924;GTPase activity;4.38399930994247e-06!GO:0016363;nuclear matrix;4.59178959200429e-06!GO:0005798;Golgi-associated vesicle;5.43783795090094e-06!GO:0000151;ubiquitin ligase complex;5.46929828557818e-06!GO:0031252;leading edge;5.51224743134188e-06!GO:0009141;nucleoside triphosphate metabolic process;5.73076920199586e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.47769131044834e-06!GO:0016563;transcription activator activity;8.13783355209048e-06!GO:0016072;rRNA metabolic process;8.23066979755417e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.41748378753248e-06!GO:0009144;purine nucleoside triphosphate metabolic process;8.41748378753248e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.7410056193747e-06!GO:0046034;ATP metabolic process;8.7410056193747e-06!GO:0003713;transcription coactivator activity;9.29101921938741e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.43807492586502e-06!GO:0003690;double-stranded DNA binding;9.43807492586502e-06!GO:0031988;membrane-bound vesicle;9.79880608815219e-06!GO:0005761;mitochondrial ribosome;9.86303354230956e-06!GO:0000313;organellar ribosome;9.86303354230956e-06!GO:0009055;electron carrier activity;1.02612932344241e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.04530252171745e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.06090045696621e-05!GO:0030029;actin filament-based process;1.09508982081471e-05!GO:0016481;negative regulation of transcription;1.12084015326901e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.12859481731306e-05!GO:0016310;phosphorylation;1.12859481731306e-05!GO:0016740;transferase activity;1.16204257446614e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.19820888676327e-05!GO:0051246;regulation of protein metabolic process;1.22020660233156e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.30982033618201e-05!GO:0044440;endosomal part;1.52358270646612e-05!GO:0010008;endosome membrane;1.52358270646612e-05!GO:0032446;protein modification by small protein conjugation;1.56006036693715e-05!GO:0051789;response to protein stimulus;1.65168206740575e-05!GO:0006986;response to unfolded protein;1.65168206740575e-05!GO:0010468;regulation of gene expression;1.65919904548058e-05!GO:0006334;nucleosome assembly;1.8096157013733e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.07528878543596e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.07528878543596e-05!GO:0006613;cotranslational protein targeting to membrane;2.08519815773308e-05!GO:0019829;cation-transporting ATPase activity;2.15137943341139e-05!GO:0008361;regulation of cell size;2.41154992802544e-05!GO:0000245;spliceosome assembly;2.42135543343425e-05!GO:0031497;chromatin assembly;2.4991272834386e-05!GO:0016567;protein ubiquitination;2.4991272834386e-05!GO:0031982;vesicle;2.53676011442297e-05!GO:0006310;DNA recombination;2.57331905383669e-05!GO:0016049;cell growth;2.7304210454475e-05!GO:0005773;vacuole;3.25668432180941e-05!GO:0043067;regulation of programmed cell death;3.4096438569593e-05!GO:0051188;cofactor biosynthetic process;3.4096438569593e-05!GO:0031410;cytoplasmic vesicle;3.4096438569593e-05!GO:0042981;regulation of apoptosis;3.80853939787713e-05!GO:0006754;ATP biosynthetic process;4.38891217701603e-05!GO:0006753;nucleoside phosphate metabolic process;4.38891217701603e-05!GO:0030867;rough endoplasmic reticulum membrane;4.4053968470173e-05!GO:0016469;proton-transporting two-sector ATPase complex;4.54191842974119e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.58006107281227e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.58006107281227e-05!GO:0000776;kinetochore;4.91346954738736e-05!GO:0003682;chromatin binding;4.98035844489011e-05!GO:0008186;RNA-dependent ATPase activity;5.10813418666699e-05!GO:0007059;chromosome segregation;5.61775364439484e-05!GO:0032774;RNA biosynthetic process;5.76205836692257e-05!GO:0007052;mitotic spindle organization and biogenesis;5.79882301304789e-05!GO:0009117;nucleotide metabolic process;6.80908888106679e-05!GO:0006351;transcription, DNA-dependent;7.3864440073672e-05!GO:0000139;Golgi membrane;7.54416402453555e-05!GO:0006752;group transfer coenzyme metabolic process;8.14602158948978e-05!GO:0006302;double-strand break repair;8.3346319919107e-05!GO:0003678;DNA helicase activity;8.47332545301455e-05!GO:0005657;replication fork;8.72792099366308e-05!GO:0051427;hormone receptor binding;8.79135319659646e-05!GO:0005839;proteasome core complex (sensu Eukaryota);9.52277218214462e-05!GO:0051052;regulation of DNA metabolic process;9.95338320751074e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000104329367662273!GO:0005856;cytoskeleton;0.00010596036771604!GO:0051168;nuclear export;0.000106280474059877!GO:0006916;anti-apoptosis;0.000110527020126785!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000120552276701111!GO:0043069;negative regulation of programmed cell death;0.00012668729375674!GO:0003677;DNA binding;0.00012748658993766!GO:0016853;isomerase activity;0.000127496169812119!GO:0003684;damaged DNA binding;0.000141903157999106!GO:0007093;mitotic cell cycle checkpoint;0.000143746332376078!GO:0030133;transport vesicle;0.000153121198961116!GO:0016779;nucleotidyltransferase activity;0.000160914942278592!GO:0004004;ATP-dependent RNA helicase activity;0.000161458607354376!GO:0004674;protein serine/threonine kinase activity;0.000170858604943201!GO:0035257;nuclear hormone receptor binding;0.000170894238714071!GO:0015980;energy derivation by oxidation of organic compounds;0.000170894238714071!GO:0000323;lytic vacuole;0.000171470099039972!GO:0005764;lysosome;0.000171470099039972!GO:0007088;regulation of mitosis;0.000173131771834255!GO:0016859;cis-trans isomerase activity;0.000190223733807169!GO:0033116;ER-Golgi intermediate compartment membrane;0.00019406711272436!GO:0001558;regulation of cell growth;0.000202155171438217!GO:0043066;negative regulation of apoptosis;0.000210124214971012!GO:0045259;proton-transporting ATP synthase complex;0.000211885157501008!GO:0007017;microtubule-based process;0.000222634872967551!GO:0045449;regulation of transcription;0.00022329624540202!GO:0000059;protein import into nucleus, docking;0.000235958432272096!GO:0015078;hydrogen ion transmembrane transporter activity;0.00024486461245455!GO:0008047;enzyme activator activity;0.00024603622567003!GO:0005769;early endosome;0.000246817378278162!GO:0006612;protein targeting to membrane;0.000251806133275883!GO:0005770;late endosome;0.000253232171839224!GO:0005905;coated pit;0.000271206516998526!GO:0000922;spindle pole;0.000305685853610357!GO:0048522;positive regulation of cellular process;0.000307492375263708!GO:0004298;threonine endopeptidase activity;0.00031361474544675!GO:0003729;mRNA binding;0.000314760494275729!GO:0004576;oligosaccharyl transferase activity;0.000343031383161453!GO:0009108;coenzyme biosynthetic process;0.000349940097301857!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000386490171809194!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000440162369019148!GO:0030134;ER to Golgi transport vesicle;0.000447052710236089!GO:0008654;phospholipid biosynthetic process;0.000463522499159848!GO:0005791;rough endoplasmic reticulum;0.000464234612572881!GO:0008250;oligosaccharyl transferase complex;0.000464234612572881!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000480659688931618!GO:0016197;endosome transport;0.000542587765411802!GO:0005048;signal sequence binding;0.00059438736732463!GO:0015631;tubulin binding;0.000649754862597777!GO:0048471;perinuclear region of cytoplasm;0.000666281786432369!GO:0030663;COPI coated vesicle membrane;0.000668576679510594!GO:0030126;COPI vesicle coat;0.000668576679510594!GO:0051252;regulation of RNA metabolic process;0.000690462916698537!GO:0006891;intra-Golgi vesicle-mediated transport;0.000698847285776584!GO:0007050;cell cycle arrest;0.000752674529848816!GO:0008022;protein C-terminus binding;0.000760641175853408!GO:0006414;translational elongation;0.000841122709356552!GO:0030127;COPII vesicle coat;0.000841122709356552!GO:0012507;ER to Golgi transport vesicle membrane;0.000841122709356552!GO:0005885;Arp2/3 protein complex;0.000876178523169695!GO:0007243;protein kinase cascade;0.000952391473410027!GO:0005876;spindle microtubule;0.00105631792194722!GO:0005096;GTPase activator activity;0.00111143635181866!GO:0006355;regulation of transcription, DNA-dependent;0.00115502177243446!GO:0044262;cellular carbohydrate metabolic process;0.00148633747471997!GO:0043284;biopolymer biosynthetic process;0.00151817963800561!GO:0005525;GTP binding;0.00151823867805079!GO:0000910;cytokinesis;0.00152186736238708!GO:0030521;androgen receptor signaling pathway;0.00153303442084039!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00154225967071194!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00158041293214354!GO:0043021;ribonucleoprotein binding;0.00160021818421214!GO:0008270;zinc ion binding;0.00167426775137485!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0017507243853159!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00176414801531395!GO:0006402;mRNA catabolic process;0.00176535325007118!GO:0045941;positive regulation of transcription;0.00181469876502435!GO:0045893;positive regulation of transcription, DNA-dependent;0.00181651896775314!GO:0031124;mRNA 3'-end processing;0.00186862769568945!GO:0030137;COPI-coated vesicle;0.00187614043528718!GO:0031968;organelle outer membrane;0.00197174121777388!GO:0000082;G1/S transition of mitotic cell cycle;0.00200159245119528!GO:0003779;actin binding;0.00207755243446!GO:0019867;outer membrane;0.00229778987229762!GO:0004003;ATP-dependent DNA helicase activity;0.00229778987229762!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00229862937224519!GO:0001726;ruffle;0.00245386643039758!GO:0006289;nucleotide-excision repair;0.00245759106482633!GO:0007005;mitochondrion organization and biogenesis;0.00250603404996331!GO:0030658;transport vesicle membrane;0.00253770021495695!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00276081352640079!GO:0018196;peptidyl-asparagine modification;0.0027697211818137!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0027697211818137!GO:0045454;cell redox homeostasis;0.00293443273780073!GO:0006892;post-Golgi vesicle-mediated transport;0.0030057331511593!GO:0032508;DNA duplex unwinding;0.0031296289848397!GO:0032392;DNA geometric change;0.0031296289848397!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00319103482426334!GO:0004527;exonuclease activity;0.00319843950184474!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00320397054570844!GO:0051920;peroxiredoxin activity;0.00322399188662457!GO:0004177;aminopeptidase activity;0.00339952939701815!GO:0006275;regulation of DNA replication;0.00341725669479239!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00353724673607362!GO:0065009;regulation of a molecular function;0.00361703606385777!GO:0045892;negative regulation of transcription, DNA-dependent;0.00380172500165143!GO:0045045;secretory pathway;0.00404218385831033!GO:0042802;identical protein binding;0.004052202330734!GO:0046914;transition metal ion binding;0.00415424913274822!GO:0035258;steroid hormone receptor binding;0.00422353206693429!GO:0017166;vinculin binding;0.00444563986932178!GO:0005637;nuclear inner membrane;0.00444563986932178!GO:0032200;telomere organization and biogenesis;0.00475829851534067!GO:0000723;telomere maintenance;0.00475829851534067!GO:0032561;guanyl ribonucleotide binding;0.00479839081466506!GO:0019001;guanyl nucleotide binding;0.00479839081466506!GO:0000819;sister chromatid segregation;0.00490643291579803!GO:0000070;mitotic sister chromatid segregation;0.00505899128264614!GO:0044452;nucleolar part;0.00513608304591031!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00537951347427648!GO:0048500;signal recognition particle;0.00557921728632909!GO:0008139;nuclear localization sequence binding;0.00560829095532241!GO:0046489;phosphoinositide biosynthetic process;0.00585701899408432!GO:0006268;DNA unwinding during replication;0.005858550077015!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00603703749930574!GO:0015399;primary active transmembrane transporter activity;0.00603703749930574!GO:0006352;transcription initiation;0.00605512206585834!GO:0019798;procollagen-proline dioxygenase activity;0.00646886165938987!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00672448516007311!GO:0003711;transcription elongation regulator activity;0.00673504301711223!GO:0030518;steroid hormone receptor signaling pathway;0.00702878969745786!GO:0031543;peptidyl-proline dioxygenase activity;0.00704337825690715!GO:0030027;lamellipodium;0.00728904175698507!GO:0031123;RNA 3'-end processing;0.00752024272195769!GO:0030660;Golgi-associated vesicle membrane;0.00763857741853862!GO:0006401;RNA catabolic process;0.00786325631085734!GO:0005581;collagen;0.00791741825587509!GO:0030132;clathrin coat of coated pit;0.008823078031769!GO:0000228;nuclear chromosome;0.00888396409362187!GO:0030118;clathrin coat;0.0088976968019689!GO:0009165;nucleotide biosynthetic process;0.00890988835099321!GO:0031625;ubiquitin protein ligase binding;0.00895313888232241!GO:0051128;regulation of cellular component organization and biogenesis;0.00928581679897247!GO:0000049;tRNA binding;0.00944902548582851!GO:0016126;sterol biosynthetic process;0.00952828096046912!GO:0050681;androgen receptor binding;0.00961417690686385!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00982797245585356!GO:0006383;transcription from RNA polymerase III promoter;0.00983908660627181!GO:0000792;heterochromatin;0.0106121707392375!GO:0000781;chromosome, telomeric region;0.0106121707392375!GO:0003746;translation elongation factor activity;0.0106121707392375!GO:0003756;protein disulfide isomerase activity;0.0106133912745264!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0106133912745264!GO:0016491;oxidoreductase activity;0.0107360865118627!GO:0016301;kinase activity;0.0112128660239374!GO:0040008;regulation of growth;0.0112215551486225!GO:0044420;extracellular matrix part;0.0112343112111523!GO:0031072;heat shock protein binding;0.0113626678680107!GO:0006338;chromatin remodeling;0.0113836100443163!GO:0050662;coenzyme binding;0.0115797900160014!GO:0046474;glycerophospholipid biosynthetic process;0.0117114157286798!GO:0006378;mRNA polyadenylation;0.0117491863707005!GO:0006950;response to stress;0.0118139247689833!GO:0005684;U2-dependent spliceosome;0.0118887498794563!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.012141950507706!GO:0045047;protein targeting to ER;0.012141950507706!GO:0008033;tRNA processing;0.0123815462465689!GO:0005741;mitochondrial outer membrane;0.0126248780967404!GO:0005862;muscle thin filament tropomyosin;0.0126248780967404!GO:0006405;RNA export from nucleus;0.0126906138159841!GO:0003899;DNA-directed RNA polymerase activity;0.0129537395870565!GO:0005832;chaperonin-containing T-complex;0.0130353836929978!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0132053461080009!GO:0048518;positive regulation of biological process;0.0135097773062045!GO:0016251;general RNA polymerase II transcription factor activity;0.0135307954761945!GO:0008312;7S RNA binding;0.0139442320179723!GO:0019843;rRNA binding;0.0140967314019785!GO:0030032;lamellipodium biogenesis;0.0143055375263629!GO:0007030;Golgi organization and biogenesis;0.0143796469361818!GO:0031570;DNA integrity checkpoint;0.0146242551518424!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0148696933084239!GO:0046483;heterocycle metabolic process;0.014890528953512!GO:0005583;fibrillar collagen;0.0151554256158404!GO:0048468;cell development;0.0154600472905512!GO:0016741;transferase activity, transferring one-carbon groups;0.0157235658383317!GO:0008168;methyltransferase activity;0.0157383184227075!GO:0001527;microfibril;0.0158350598335371!GO:0043488;regulation of mRNA stability;0.0161072800197679!GO:0043487;regulation of RNA stability;0.0161072800197679!GO:0051539;4 iron, 4 sulfur cluster binding;0.0162703771802951!GO:0003702;RNA polymerase II transcription factor activity;0.0164648763750492!GO:0009967;positive regulation of signal transduction;0.0164924917148632!GO:0022408;negative regulation of cell-cell adhesion;0.0166177594901451!GO:0051271;negative regulation of cell motility;0.016690389499784!GO:0030695;GTPase regulator activity;0.0169611453170487!GO:0031901;early endosome membrane;0.0170621471086279!GO:0006509;membrane protein ectodomain proteolysis;0.0172669087484381!GO:0033619;membrane protein proteolysis;0.0172669087484381!GO:0006607;NLS-bearing substrate import into nucleus;0.0175252207019637!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0176308231512789!GO:0006376;mRNA splice site selection;0.0177425229871097!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0177425229871097!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0182616098018016!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0184304571752891!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0184304571752891!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0184304571752891!GO:0005083;small GTPase regulator activity;0.0188221518317546!GO:0045792;negative regulation of cell size;0.0188649619226742!GO:0000118;histone deacetylase complex;0.0189631225364067!GO:0006497;protein amino acid lipidation;0.0192651317184144!GO:0007346;regulation of progression through mitotic cell cycle;0.0193351860387297!GO:0007041;lysosomal transport;0.0196380089638192!GO:0007034;vacuolar transport;0.0196392669580794!GO:0006270;DNA replication initiation;0.0196392669580794!GO:0007265;Ras protein signal transduction;0.0196392669580794!GO:0031529;ruffle organization and biogenesis;0.0199616167026428!GO:0040029;regulation of gene expression, epigenetic;0.0199955286708382!GO:0030308;negative regulation of cell growth;0.0206043801552629!GO:0000339;RNA cap binding;0.0206043801552629!GO:0000786;nucleosome;0.020643303815838!GO:0005938;cell cortex;0.0209817275872809!GO:0006007;glucose catabolic process;0.0210265956029327!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0213431544799523!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0213431544799523!GO:0001952;regulation of cell-matrix adhesion;0.0213431544799523!GO:0030176;integral to endoplasmic reticulum membrane;0.0213431544799523!GO:0006611;protein export from nucleus;0.0218338841421111!GO:0031418;L-ascorbic acid binding;0.0221037421085186!GO:0005869;dynactin complex;0.0221243624018483!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0222322811320431!GO:0000018;regulation of DNA recombination;0.022286700253767!GO:0006984;ER-nuclear signaling pathway;0.0222978475490692!GO:0048487;beta-tubulin binding;0.0226499279546477!GO:0043492;ATPase activity, coupled to movement of substances;0.0239711481618778!GO:0042770;DNA damage response, signal transduction;0.0243159996141189!GO:0008017;microtubule binding;0.0246904389295478!GO:0005762;mitochondrial large ribosomal subunit;0.0248814553665729!GO:0000315;organellar large ribosomal subunit;0.0248814553665729!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0250020087738601!GO:0006379;mRNA cleavage;0.0251872763321871!GO:0007004;telomere maintenance via telomerase;0.0252792850226075!GO:0007160;cell-matrix adhesion;0.0258587061909114!GO:0000209;protein polyubiquitination;0.0259119149543458!GO:0051287;NAD binding;0.0261756225167824!GO:0005875;microtubule associated complex;0.0266272561001989!GO:0007264;small GTPase mediated signal transduction;0.0279441757971616!GO:0009112;nucleobase metabolic process;0.0279441757971616!GO:0003923;GPI-anchor transamidase activity;0.0279441757971616!GO:0016255;attachment of GPI anchor to protein;0.0279441757971616!GO:0042765;GPI-anchor transamidase complex;0.0279441757971616!GO:0006284;base-excision repair;0.0279441757971616!GO:0035267;NuA4 histone acetyltransferase complex;0.0279682459995045!GO:0050790;regulation of catalytic activity;0.0280229791903109!GO:0008154;actin polymerization and/or depolymerization;0.0280229791903109!GO:0030522;intracellular receptor-mediated signaling pathway;0.028974294088411!GO:0000287;magnesium ion binding;0.0290492784294916!GO:0000152;nuclear ubiquitin ligase complex;0.0290492784294916!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0290538207974001!GO:0016584;nucleosome positioning;0.0292126349654288!GO:0016408;C-acyltransferase activity;0.0293778538880229!GO:0043495;protein anchor;0.0294807462362073!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0294807462362073!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.029678273706502!GO:0033043;regulation of organelle organization and biogenesis;0.029678273706502!GO:0031589;cell-substrate adhesion;0.029678273706502!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0305431948207023!GO:0008180;signalosome;0.0317373974854967!GO:0000725;recombinational repair;0.031851046531326!GO:0000724;double-strand break repair via homologous recombination;0.031851046531326!GO:0006541;glutamine metabolic process;0.0321822192796132!GO:0033559;unsaturated fatty acid metabolic process;0.032796847391727!GO:0006636;unsaturated fatty acid biosynthetic process;0.032796847391727!GO:0000123;histone acetyltransferase complex;0.0329799189961539!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0329799189961539!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0333035275328848!GO:0051053;negative regulation of DNA metabolic process;0.0334390831113116!GO:0001953;negative regulation of cell-matrix adhesion;0.033465991201245!GO:0005784;translocon complex;0.0337880127732317!GO:0051087;chaperone binding;0.0337880127732317!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0341521042271177!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0341521042271177!GO:0031577;spindle checkpoint;0.0346000501547653!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0346137472468448!GO:0000077;DNA damage checkpoint;0.0349655361180073!GO:0005595;collagen type XII;0.0349655361180073!GO:0001666;response to hypoxia;0.0353387385532364!GO:0030384;phosphoinositide metabolic process;0.036377142014835!GO:0005680;anaphase-promoting complex;0.036377142014835!GO:0006520;amino acid metabolic process;0.0368669477034099!GO:0043624;cellular protein complex disassembly;0.0370299984839786!GO:0035035;histone acetyltransferase binding;0.0374652239546427!GO:0006354;RNA elongation;0.0384669168635591!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0385939590709156!GO:0005099;Ras GTPase activator activity;0.0385939590709156!GO:0031461;cullin-RING ubiquitin ligase complex;0.0387842741850972!GO:0004518;nuclease activity;0.038921916341608!GO:0008234;cysteine-type peptidase activity;0.0389291009102622!GO:0006650;glycerophospholipid metabolic process;0.0389745141131602!GO:0032906;transforming growth factor-beta2 production;0.0392296616270209!GO:0032909;regulation of transforming growth factor-beta2 production;0.0392296616270209!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0393798305897096!GO:0043022;ribosome binding;0.0394930743998538!GO:0051348;negative regulation of transferase activity;0.0396659396857325!GO:0016044;membrane organization and biogenesis;0.0399292608120474!GO:0032940;secretion by cell;0.0399292608120474!GO:0040013;negative regulation of locomotion;0.0399292608120474!GO:0033673;negative regulation of kinase activity;0.0399699549804544!GO:0006469;negative regulation of protein kinase activity;0.0399699549804544!GO:0005774;vacuolar membrane;0.0402645899260118!GO:0006695;cholesterol biosynthetic process;0.0410942706720252!GO:0007040;lysosome organization and biogenesis;0.0412864091889944!GO:0006595;polyamine metabolic process;0.0413602870988547!GO:0006091;generation of precursor metabolites and energy;0.0413815799602898!GO:0030119;AP-type membrane coat adaptor complex;0.0416217200300538!GO:0032984;macromolecular complex disassembly;0.0422468027485969!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0432155768614547!GO:0044430;cytoskeletal part;0.0433661460606863!GO:0019752;carboxylic acid metabolic process;0.0441913318147436!GO:0006144;purine base metabolic process;0.045078845066212!GO:0007162;negative regulation of cell adhesion;0.0451220329127767!GO:0043189;H4/H2A histone acetyltransferase complex;0.0462170984032592!GO:0015992;proton transport;0.0463114935681932!GO:0042393;histone binding;0.0463201989820591!GO:0005591;collagen type VIII;0.0465479304023533!GO:0005598;short-chain collagen;0.0465479304023533!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0466055123654576!GO:0008143;poly(A) binding;0.0466055123654576!GO:0007033;vacuole organization and biogenesis;0.0474660711774433!GO:0046519;sphingoid metabolic process;0.0479579780063634!GO:0006818;hydrogen transport;0.04873121637614!GO:0043631;RNA polyadenylation;0.0493238572550216!GO:0007406;negative regulation of neuroblast proliferation;0.0494713306201812!GO:0042158;lipoprotein biosynthetic process;0.0497993809496316 | |||
|sample_id=14329 | |sample_id=14329 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.39149711959;ALX4:2.33986274228;NKX3-1:2.30459249668;EN1,2:1.91035954348;NR3C1:1.87059293171;GATA4:1.84907694278;GCM1,2:1.81454504039;FOXL1:1.77079457302;KLF4:1.62479206464;PRDM1:1.62116990548;XBP1:1.61863381965;GZF1:1.61854698138;ZNF384:1.58913742677;NKX3-2:1.56397365074;TEAD1:1.53947780338;ESR1:1.52160275189;UFEwm:1.51941322078;MYBL2:1.49065589639;TOPORS:1.45601311474;HIF1A:1.40966608792;EVI1:1.38390464174;RXRA_VDR{dimer}:1.36486320638;HOX{A5,B5}:1.34460099668;SRF:1.32068340673;TFDP1:1.2801596651;HSF1,2:1.25643091818;HMGA1,2:1.25339974435;MZF1:1.24285012862;NKX2-2,8:1.17595498995;POU3F1..4:1.15361043002;PAX8:1.15018572566;TEF:1.10916416312;GFI1:1.09243675482;E2F1..5:1.06055896476;HMX1:1.04023282764;AHR_ARNT_ARNT2:1.03624213812;AIRE:1.03500395501;PDX1:1.03351345289;ZBTB16:1.00256291391;GFI1B:0.997541013288;EP300:0.994870902755;MYB:0.991114887994;IKZF1:0.990276881853;SOX17:0.98439270056;ZIC1..3:0.953933647898;NFE2L1:0.945856717185;ZNF238:0.945482480218;SPZ1:0.904659128375;HOX{A4,D4}:0.895335866886;GTF2I:0.885451946872;MAZ:0.846371768798;POU1F1:0.826568744257;GTF2A1,2:0.818651857568;TP53:0.810954728738;BPTF:0.807484037654;RXR{A,B,G}:0.792847201973;EBF1:0.783321526184;NKX2-1,4:0.755152458163;FOXD3:0.746232306871;PAX3,7:0.734252028401;MTE{core}:0.713682301003;TAL1_TCF{3,4,12}:0.659328874841;TLX1..3_NFIC{dimer}:0.657080475443;NFIX:0.621882320676;NFATC1..3:0.609072978422;RREB1:0.588406130016;ATF6:0.569859410177;NFY{A,B,C}:0.5616758188;TFAP4:0.559786635295;NANOG{mouse}:0.559443331997;GLI1..3:0.547958511126;XCPE1{core}:0.525544130178;NR1H4:0.514193874933;STAT1,3:0.507599056523;FOXP1:0.443585605882;SMAD1..7,9:0.412515670837;ARID5B:0.384929238709;ZBTB6:0.360974870122;HLF:0.357921315681;ELK1,4_GABP{A,B1}:0.354352339585;NFE2L2:0.343996671919;MED-1{core}:0.334347623807;BACH2:0.334160727717;MAFB:0.323713356177;ZNF143:0.317509646747;TFAP2{A,C}:0.315833572384;FOS_FOS{B,L1}_JUN{B,D}:0.313338219654;DMAP1_NCOR{1,2}_SMARC:0.312294486008;SP1:0.297726927936;NRF1:0.292440930741;MEF2{A,B,C,D}:0.243851842784;PAX4:0.235399128072;PITX1..3:0.233457363348;HES1:0.21307807452;YY1:0.20367571198;FOXA2:0.195232439535;CREB1:0.17098417016;ATF5_CREB3:0.157739636737;FOXN1:0.145581708705;RFX1:0.139115653516;HOX{A6,A7,B6,B7}:0.104839594993;POU5F1:0.100669580659;NFE2:0.100113733391;ZFP161:0.0970015130797;PAX5:0.0882728776008;RUNX1..3:0.0838415312195;FOSL2:0.0788509716831;TFAP2B:0.0752178903869;FOXO1,3,4:0.0402369232751;PRRX1,2:0.0322294249491;FOX{I1,J2}:0.0238900201572;HIC1:0.0195215680722;SOX2:0.0187605962145;LEF1_TCF7_TCF7L1,2:-0.00333809240355;PATZ1:-0.0152668162593;CEBPA,B_DDIT3:-0.027175443112;ELF1,2,4:-0.0386685549643;PAX1,9:-0.0762337117242;TFCP2:-0.0901250533945;IRF1,2:-0.0929116046065;DBP:-0.0946240176648;T:-0.119443225863;PAX2:-0.124866236037;EGR1..3:-0.135539914164;TBP:-0.136573639699;NKX2-3_NKX2-5:-0.151676829176;TBX4,5:-0.174104752079;CDC5L:-0.178838424451;POU2F1..3:-0.184249565217;MYFfamily:-0.185843785966;HOXA9_MEIS1:-0.198082257359;ATF4:-0.213072408723;HAND1,2:-0.218507423045;ZNF148:-0.219789356112;CDX1,2,4:-0.226517570874;STAT2,4,6:-0.237103654292;SOX5:-0.243469662436;STAT5{A,B}:-0.292492633232;AR:-0.29530606863;HNF1A:-0.30004299702;SPI1:-0.329412310641;ONECUT1,2:-0.337534789598;SOX{8,9,10}:-0.35332691965;NHLH1,2:-0.357005332228;FOX{D1,D2}:-0.371290379467;ETS1,2:-0.389239066011;NKX6-1,2:-0.404070429305;FOXP3:-0.405203765078;HNF4A_NR2F1,2:-0.414882758141;PPARG:-0.418477092058;SPIB:-0.455109363978;LHX3,4:-0.459275769451;POU6F1:-0.482212869513;TLX2:-0.497079996503;JUN:-0.512196968952;RBPJ:-0.516916429333;CUX2:-0.546537313;NFKB1_REL_RELA:-0.557827614444;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.570936498689;ADNP_IRX_SIX_ZHX:-0.578381937808;bHLH_family:-0.604215546893;ATF2:-0.634120452551;TGIF1:-0.648994527902;OCT4_SOX2{dimer}:-0.673831269487;MTF1:-0.711987799007;REST:-0.725752986925;VSX1,2:-0.751017645405;SREBF1,2:-0.760617025293;CRX:-0.793242342507;ZNF423:-0.798826166768;BREu{core}:-0.827081735399;IKZF2:-0.843017893237;NFIL3:-0.843437240048;ALX1:-0.845685711136;RFX2..5_RFXANK_RFXAP:-0.856846539137;IRF7:-0.866929912865;PAX6:-0.899640890785;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.914317311819;NR6A1:-0.975380596691;SNAI1..3:-1.02969901601;GATA6:-1.12334020364;FOXM1:-1.18128674981;PBX1:-1.25047533988;NR5A1,2:-1.28504878966;ZEB1:-1.30150643828;NANOG:-1.30951183542;FOX{F1,F2,J1}:-1.38286445567;ESRRA:-1.3882034132;FOXQ1:-1.45348822171;RORA:-1.47641758465;LMO2:-1.48474509942;MYOD1:-1.54149618756 | |top_motifs=HBP1_HMGB_SSRP1_UBTF:2.39149711959;ALX4:2.33986274228;NKX3-1:2.30459249668;EN1,2:1.91035954348;NR3C1:1.87059293171;GATA4:1.84907694278;GCM1,2:1.81454504039;FOXL1:1.77079457302;KLF4:1.62479206464;PRDM1:1.62116990548;XBP1:1.61863381965;GZF1:1.61854698138;ZNF384:1.58913742677;NKX3-2:1.56397365074;TEAD1:1.53947780338;ESR1:1.52160275189;UFEwm:1.51941322078;MYBL2:1.49065589639;TOPORS:1.45601311474;HIF1A:1.40966608792;EVI1:1.38390464174;RXRA_VDR{dimer}:1.36486320638;HOX{A5,B5}:1.34460099668;SRF:1.32068340673;TFDP1:1.2801596651;HSF1,2:1.25643091818;HMGA1,2:1.25339974435;MZF1:1.24285012862;NKX2-2,8:1.17595498995;POU3F1..4:1.15361043002;PAX8:1.15018572566;TEF:1.10916416312;GFI1:1.09243675482;E2F1..5:1.06055896476;HMX1:1.04023282764;AHR_ARNT_ARNT2:1.03624213812;AIRE:1.03500395501;PDX1:1.03351345289;ZBTB16:1.00256291391;GFI1B:0.997541013288;EP300:0.994870902755;MYB:0.991114887994;IKZF1:0.990276881853;SOX17:0.98439270056;ZIC1..3:0.953933647898;NFE2L1:0.945856717185;ZNF238:0.945482480218;SPZ1:0.904659128375;HOX{A4,D4}:0.895335866886;GTF2I:0.885451946872;MAZ:0.846371768798;POU1F1:0.826568744257;GTF2A1,2:0.818651857568;TP53:0.810954728738;BPTF:0.807484037654;RXR{A,B,G}:0.792847201973;EBF1:0.783321526184;NKX2-1,4:0.755152458163;FOXD3:0.746232306871;PAX3,7:0.734252028401;MTE{core}:0.713682301003;TAL1_TCF{3,4,12}:0.659328874841;TLX1..3_NFIC{dimer}:0.657080475443;NFIX:0.621882320676;NFATC1..3:0.609072978422;RREB1:0.588406130016;ATF6:0.569859410177;NFY{A,B,C}:0.5616758188;TFAP4:0.559786635295;NANOG{mouse}:0.559443331997;GLI1..3:0.547958511126;XCPE1{core}:0.525544130178;NR1H4:0.514193874933;STAT1,3:0.507599056523;FOXP1:0.443585605882;SMAD1..7,9:0.412515670837;ARID5B:0.384929238709;ZBTB6:0.360974870122;HLF:0.357921315681;ELK1,4_GABP{A,B1}:0.354352339585;NFE2L2:0.343996671919;MED-1{core}:0.334347623807;BACH2:0.334160727717;MAFB:0.323713356177;ZNF143:0.317509646747;TFAP2{A,C}:0.315833572384;FOS_FOS{B,L1}_JUN{B,D}:0.313338219654;DMAP1_NCOR{1,2}_SMARC:0.312294486008;SP1:0.297726927936;NRF1:0.292440930741;MEF2{A,B,C,D}:0.243851842784;PAX4:0.235399128072;PITX1..3:0.233457363348;HES1:0.21307807452;YY1:0.20367571198;FOXA2:0.195232439535;CREB1:0.17098417016;ATF5_CREB3:0.157739636737;FOXN1:0.145581708705;RFX1:0.139115653516;HOX{A6,A7,B6,B7}:0.104839594993;POU5F1:0.100669580659;NFE2:0.100113733391;ZFP161:0.0970015130797;PAX5:0.0882728776008;RUNX1..3:0.0838415312195;FOSL2:0.0788509716831;TFAP2B:0.0752178903869;FOXO1,3,4:0.0402369232751;PRRX1,2:0.0322294249491;FOX{I1,J2}:0.0238900201572;HIC1:0.0195215680722;SOX2:0.0187605962145;LEF1_TCF7_TCF7L1,2:-0.00333809240355;PATZ1:-0.0152668162593;CEBPA,B_DDIT3:-0.027175443112;ELF1,2,4:-0.0386685549643;PAX1,9:-0.0762337117242;TFCP2:-0.0901250533945;IRF1,2:-0.0929116046065;DBP:-0.0946240176648;T:-0.119443225863;PAX2:-0.124866236037;EGR1..3:-0.135539914164;TBP:-0.136573639699;NKX2-3_NKX2-5:-0.151676829176;TBX4,5:-0.174104752079;CDC5L:-0.178838424451;POU2F1..3:-0.184249565217;MYFfamily:-0.185843785966;HOXA9_MEIS1:-0.198082257359;ATF4:-0.213072408723;HAND1,2:-0.218507423045;ZNF148:-0.219789356112;CDX1,2,4:-0.226517570874;STAT2,4,6:-0.237103654292;SOX5:-0.243469662436;STAT5{A,B}:-0.292492633232;AR:-0.29530606863;HNF1A:-0.30004299702;SPI1:-0.329412310641;ONECUT1,2:-0.337534789598;SOX{8,9,10}:-0.35332691965;NHLH1,2:-0.357005332228;FOX{D1,D2}:-0.371290379467;ETS1,2:-0.389239066011;NKX6-1,2:-0.404070429305;FOXP3:-0.405203765078;HNF4A_NR2F1,2:-0.414882758141;PPARG:-0.418477092058;SPIB:-0.455109363978;LHX3,4:-0.459275769451;POU6F1:-0.482212869513;TLX2:-0.497079996503;JUN:-0.512196968952;RBPJ:-0.516916429333;CUX2:-0.546537313;NFKB1_REL_RELA:-0.557827614444;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.570936498689;ADNP_IRX_SIX_ZHX:-0.578381937808;bHLH_family:-0.604215546893;ATF2:-0.634120452551;TGIF1:-0.648994527902;OCT4_SOX2{dimer}:-0.673831269487;MTF1:-0.711987799007;REST:-0.725752986925;VSX1,2:-0.751017645405;SREBF1,2:-0.760617025293;CRX:-0.793242342507;ZNF423:-0.798826166768;BREu{core}:-0.827081735399;IKZF2:-0.843017893237;NFIL3:-0.843437240048;ALX1:-0.845685711136;RFX2..5_RFXANK_RFXAP:-0.856846539137;IRF7:-0.866929912865;PAX6:-0.899640890785;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.914317311819;NR6A1:-0.975380596691;SNAI1..3:-1.02969901601;GATA6:-1.12334020364;FOXM1:-1.18128674981;PBX1:-1.25047533988;NR5A1,2:-1.28504878966;ZEB1:-1.30150643828;NANOG:-1.30951183542;FOX{F1,F2,J1}:-1.38286445567;ESRRA:-1.3882034132;FOXQ1:-1.45348822171;RORA:-1.47641758465;LMO2:-1.48474509942;MYOD1:-1.54149618756 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14329-155E9;search_select_hide=table117:FF:14329-155E9 | |||
}} | }} | ||
Latest revision as of 19:06, 4 June 2020
| Name: | Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12405 |
| Sample type: | fractionations and perturbations |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12405
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12405
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.139 |
| 10 | 10 | 0.792 |
| 100 | 100 | 0.602 |
| 101 | 101 | 0.409 |
| 102 | 102 | 0.089 |
| 103 | 103 | 0.0798 |
| 104 | 104 | 0.736 |
| 105 | 105 | 0.247 |
| 106 | 106 | 0.122 |
| 107 | 107 | 0.916 |
| 108 | 108 | 0.974 |
| 109 | 109 | 0.0413 |
| 11 | 11 | 0.115 |
| 110 | 110 | 0.788 |
| 111 | 111 | 0.392 |
| 112 | 112 | 0.314 |
| 113 | 113 | 0.0558 |
| 114 | 114 | 0.484 |
| 115 | 115 | 0.266 |
| 116 | 116 | 0.855 |
| 117 | 117 | 0.236 |
| 118 | 118 | 0.373 |
| 119 | 119 | 0.361 |
| 12 | 12 | 0.709 |
| 120 | 120 | 0.663 |
| 121 | 121 | 0.538 |
| 122 | 122 | 0.0419 |
| 123 | 123 | 0.0315 |
| 124 | 124 | 0.146 |
| 125 | 125 | 0.487 |
| 126 | 126 | 0.346 |
| 127 | 127 | 0.562 |
| 128 | 128 | 0.0846 |
| 129 | 129 | 0.213 |
| 13 | 13 | 0.874 |
| 130 | 130 | 0.823 |
| 131 | 131 | 0.37 |
| 132 | 132 | 0.784 |
| 133 | 133 | 0.808 |
| 134 | 134 | 0.732 |
| 135 | 135 | 0.755 |
| 136 | 136 | 0.162 |
| 137 | 137 | 0.55 |
| 138 | 138 | 0.429 |
| 139 | 139 | 0.00436 |
| 14 | 14 | 0.417 |
| 140 | 140 | 0.848 |
| 141 | 141 | 0.494 |
| 142 | 142 | 0.939 |
| 143 | 143 | 0.291 |
| 144 | 144 | 0.565 |
| 145 | 145 | 0.898 |
| 146 | 146 | 0.146 |
| 147 | 147 | 0.134 |
| 148 | 148 | 0.0835 |
| 149 | 149 | 0.578 |
| 15 | 15 | 0.0477 |
| 150 | 150 | 0.546 |
| 151 | 151 | 0.256 |
| 152 | 152 | 0.273 |
| 153 | 153 | 0.944 |
| 154 | 154 | 0.224 |
| 155 | 155 | 0.0426 |
| 156 | 156 | 0.649 |
| 157 | 157 | 0.693 |
| 158 | 158 | 0.516 |
| 159 | 159 | 0.17 |
| 16 | 16 | 0.56 |
| 160 | 160 | 0.226 |
| 161 | 161 | 0.16 |
| 162 | 162 | 0.399 |
| 163 | 163 | 0.681 |
| 164 | 164 | 0.895 |
| 165 | 165 | 0.507 |
| 166 | 166 | 0.0381 |
| 167 | 167 | 0.421 |
| 168 | 168 | 0.856 |
| 169 | 169 | 0.59 |
| 17 | 17 | 0.824 |
| 18 | 18 | 0.854 |
| 19 | 19 | 0.796 |
| 2 | 2 | 0.491 |
| 20 | 20 | 0.839 |
| 21 | 21 | 0.146 |
| 22 | 22 | 0.594 |
| 23 | 23 | 0.91 |
| 24 | 24 | 0.389 |
| 25 | 25 | 0.166 |
| 26 | 26 | 0.315 |
| 27 | 27 | 0.293 |
| 28 | 28 | 0.773 |
| 29 | 29 | 0.886 |
| 3 | 3 | 0.548 |
| 30 | 30 | 0.823 |
| 31 | 31 | 0.558 |
| 32 | 32 | 8.86577e-5 |
| 33 | 33 | 0.487 |
| 34 | 34 | 0.516 |
| 35 | 35 | 0.227 |
| 36 | 36 | 0.0648 |
| 37 | 37 | 0.338 |
| 38 | 38 | 0.342 |
| 39 | 39 | 0.674 |
| 4 | 4 | 0.567 |
| 40 | 40 | 0.0483 |
| 41 | 41 | 0.369 |
| 42 | 42 | 0.451 |
| 43 | 43 | 0.329 |
| 44 | 44 | 0.286 |
| 45 | 45 | 0.23 |
| 46 | 46 | 0.619 |
| 47 | 47 | 0.196 |
| 48 | 48 | 0.463 |
| 49 | 49 | 0.123 |
| 5 | 5 | 0.513 |
| 50 | 50 | 0.794 |
| 51 | 51 | 0.36 |
| 52 | 52 | 0.473 |
| 53 | 53 | 0.455 |
| 54 | 54 | 0.394 |
| 55 | 55 | 0.809 |
| 56 | 56 | 0.298 |
| 57 | 57 | 0.854 |
| 58 | 58 | 0.078 |
| 59 | 59 | 0.316 |
| 6 | 6 | 0.501 |
| 60 | 60 | 0.142 |
| 61 | 61 | 0.146 |
| 62 | 62 | 0.101 |
| 63 | 63 | 0.499 |
| 64 | 64 | 0.177 |
| 65 | 65 | 0.283 |
| 66 | 66 | 0.589 |
| 67 | 67 | 0.844 |
| 68 | 68 | 0.526 |
| 69 | 69 | 0.964 |
| 7 | 7 | 0.0715 |
| 70 | 70 | 0.0318 |
| 71 | 71 | 0.817 |
| 72 | 72 | 0.224 |
| 73 | 73 | 0.325 |
| 74 | 74 | 0.0464 |
| 75 | 75 | 0.263 |
| 76 | 76 | 0.616 |
| 77 | 77 | 0.941 |
| 78 | 78 | 0.0819 |
| 79 | 79 | 0.0363 |
| 8 | 8 | 0.136 |
| 80 | 80 | 0.502 |
| 81 | 81 | 0.604 |
| 82 | 82 | 0.174 |
| 83 | 83 | 0.11 |
| 84 | 84 | 0.226 |
| 85 | 85 | 0.371 |
| 86 | 86 | 0.771 |
| 87 | 87 | 0.14 |
| 88 | 88 | 0.574 |
| 89 | 89 | 0.346 |
| 9 | 9 | 0.7 |
| 90 | 90 | 0.211 |
| 91 | 91 | 0.904 |
| 92 | 92 | 0.594 |
| 93 | 93 | 0.537 |
| 94 | 94 | 0.456 |
| 95 | 95 | 0.144 |
| 96 | 96 | 0.97 |
| 97 | 97 | 0.614 |
| 98 | 98 | 0.0886 |
| 99 | 99 | 0.423 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12405
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000667 human Fibroblast - skin dystrophia myotonica, nuclear fraction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
DOID: Disease
4 (disease)
17 (musculoskeletal system disease)
450 (myotonic disease)
7 (disease of anatomical entity)
66 (muscle tissue disease)
423 (myopathy)
0080000 (muscular disease)
11722 (myotonic dystrophy)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000253 (human fibroblast- skin dystrophia myotonica sample)
0000406 (nuclear fraction sample)
0000667 (human Fibroblast - skin dystrophia myotonica, nuclear fraction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
