FF:10428-106D5: Difference between revisions

Latest revision as of 14:01, 3 June 2020

Name:	anaplastic carcinoma cell line:8305C
Species:	Human (Homo sapiens)
Library ID:	CNhs10745
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	thyroid
dev stage	NA
sex	unknown
age	NA
cell type	unclassifiable
cell line	8305C
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005691

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10745		CAGE		DRX007826		DRR008698

Accession ID Hg19

Library id		BAM		CTSS
CNhs10745		DRZ000123		DRZ001508

Accession ID Hg38

Library id		BAM		CTSS
CNhs10745		DRZ011473		DRZ012858

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0569
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.177
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0458
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0458
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0458
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.00521
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0389
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.186
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0458
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.129
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0824
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.45
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0873
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0351
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0458
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.00558
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0458
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.334
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0494
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0694
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.16
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	1.008
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10745

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0593
MA0003.1	MA0003.1	0.0963
MA0004.1	MA0004.1	0.976
MA0006.1	MA0006.1	0.851
MA0007.1	MA0007.1	0.0708
MA0009.1	MA0009.1	0.477
MA0014.1	MA0014.1	0.776
MA0017.1	MA0017.1	5.2888e-4
MA0018.2	MA0018.2	0.00571
MA0019.1	MA0019.1	0.19
MA0024.1	MA0024.1	0.534
MA0025.1	MA0025.1	0.921
MA0027.1	MA0027.1	0.77
MA0028.1	MA0028.1	0.00372
MA0029.1	MA0029.1	0.451
MA0030.1	MA0030.1	0.247
MA0031.1	MA0031.1	0.0364
MA0035.2	MA0035.2	0.486
MA0038.1	MA0038.1	0.473
MA0039.2	MA0039.2	0.252
MA0040.1	MA0040.1	0.898
MA0041.1	MA0041.1	0.387
MA0042.1	MA0042.1	0.761
MA0043.1	MA0043.1	0.566
MA0046.1	MA0046.1	0.5
MA0047.2	MA0047.2	0.0559
MA0048.1	MA0048.1	0.255
MA0050.1	MA0050.1	4.22286e-8
MA0051.1	MA0051.1	1.10064e-6
MA0052.1	MA0052.1	0.0458
MA0055.1	MA0055.1	0.931
MA0057.1	MA0057.1	0.153
MA0058.1	MA0058.1	0.741
MA0059.1	MA0059.1	0.415
MA0060.1	MA0060.1	0.33
MA0061.1	MA0061.1	0.971
MA0062.2	MA0062.2	0.0838
MA0065.2	MA0065.2	2.61773e-4
MA0066.1	MA0066.1	0.043
MA0067.1	MA0067.1	0.0356
MA0068.1	MA0068.1	0.395
MA0069.1	MA0069.1	0.445
MA0070.1	MA0070.1	0.13
MA0071.1	MA0071.1	0.0125
MA0072.1	MA0072.1	0.18
MA0073.1	MA0073.1	0.261
MA0074.1	MA0074.1	0.998
MA0076.1	MA0076.1	0.00398
MA0077.1	MA0077.1	0.453
MA0078.1	MA0078.1	0.726
MA0079.2	MA0079.2	0.416
MA0080.2	MA0080.2	1.00156e-4
MA0081.1	MA0081.1	0.567
MA0083.1	MA0083.1	0.424
MA0084.1	MA0084.1	0.237
MA0087.1	MA0087.1	0.297
MA0088.1	MA0088.1	0.297
MA0090.1	MA0090.1	0.0237
MA0091.1	MA0091.1	0.0641
MA0092.1	MA0092.1	0.18
MA0093.1	MA0093.1	0.844
MA0099.2	MA0099.2	5.15885e-5
MA0100.1	MA0100.1	0.628
MA0101.1	MA0101.1	0.181
MA0102.2	MA0102.2	0.115
MA0103.1	MA0103.1	0.0469
MA0104.2	MA0104.2	0.752
MA0105.1	MA0105.1	0.12
MA0106.1	MA0106.1	0.288
MA0107.1	MA0107.1	0.072
MA0108.2	MA0108.2	0.27
MA0111.1	MA0111.1	0.439
MA0112.2	MA0112.2	1.00023e-4
MA0113.1	MA0113.1	0.257
MA0114.1	MA0114.1	0.00632
MA0115.1	MA0115.1	0.0136
MA0116.1	MA0116.1	0.00467
MA0117.1	MA0117.1	0.494
MA0119.1	MA0119.1	0.966
MA0122.1	MA0122.1	0.78
MA0124.1	MA0124.1	0.661
MA0125.1	MA0125.1	0.498
MA0131.1	MA0131.1	0.128
MA0135.1	MA0135.1	0.128
MA0136.1	MA0136.1	0.356
MA0137.2	MA0137.2	0.554
MA0138.2	MA0138.2	0.0888
MA0139.1	MA0139.1	0.526
MA0140.1	MA0140.1	0.8
MA0141.1	MA0141.1	8.40797e-4
MA0142.1	MA0142.1	0.0182
MA0143.1	MA0143.1	0.658
MA0144.1	MA0144.1	0.382
MA0145.1	MA0145.1	0.0565
MA0146.1	MA0146.1	0.00364
MA0147.1	MA0147.1	0.66
MA0148.1	MA0148.1	0.287
MA0149.1	MA0149.1	0.834
MA0150.1	MA0150.1	0.251
MA0152.1	MA0152.1	0.0315
MA0153.1	MA0153.1	0.611
MA0154.1	MA0154.1	0.0135
MA0155.1	MA0155.1	0.356
MA0156.1	MA0156.1	0.152
MA0157.1	MA0157.1	0.362
MA0159.1	MA0159.1	0.211
MA0160.1	MA0160.1	0.014
MA0162.1	MA0162.1	0.373
MA0163.1	MA0163.1	9.25566e-4
MA0164.1	MA0164.1	0.0637
MA0258.1	MA0258.1	0.00123
MA0259.1	MA0259.1	0.827

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10745

Novel motif	Logo	P-value
1	1	0.115
10	10	0.313
100	100	0.98
101	101	0.573
102	102	0.119
103	103	0.176
104	104	0.471
105	105	0.124
106	106	0.584
107	107	0.641
108	108	0.495
109	109	0.0768
11	11	0.243
110	110	0.705
111	111	0.352
112	112	0.00396
113	113	0.107
114	114	0.083
115	115	0.239
116	116	0.526
117	117	0.419
118	118	0.925
119	119	0.32
12	12	0.655
120	120	0.715
121	121	0.558
122	122	0.0238
123	123	0.617
124	124	0.409
125	125	0.789
126	126	0.446
127	127	0.188
128	128	0.379
129	129	0.158
13	13	0.213
130	130	0.685
131	131	0.535
132	132	0.993
133	133	0.737
134	134	0.691
135	135	0.652
136	136	0.397
137	137	0.851
138	138	0.501
139	139	0.941
14	14	0.224
140	140	0.012
141	141	0.0308
142	142	0.122
143	143	0.832
144	144	0.908
145	145	0.969
146	146	0.931
147	147	0.71
148	148	0.0647
149	149	0.474
15	15	0.813
150	150	0.789
151	151	0.408
152	152	0.18
153	153	0.555
154	154	0.844
155	155	0.173
156	156	0.536
157	157	0.907
158	158	0.345
159	159	0.604
16	16	0.257
160	160	0.0969
161	161	0.749
162	162	0.581
163	163	0.109
164	164	0.374
165	165	0.955
166	166	0.613
167	167	0.533
168	168	0.0427
169	169	0.00728
17	17	0.166
18	18	0.784
19	19	0.212
2	2	0.455
20	20	0.387
21	21	0.713
22	22	0.0598
23	23	0.949
24	24	0.395
25	25	0.225
26	26	0.418
27	27	0.135
28	28	0.893
29	29	0.286
3	3	0.66
30	30	0.671
31	31	0.255
32	32	0.00641
33	33	0.903
34	34	0.0584
35	35	0.748
36	36	0.454
37	37	0.198
38	38	0.165
39	39	0.799
4	4	0.384
40	40	0.0861
41	41	0.0103
42	42	0.901
43	43	0.156
44	44	0.034
45	45	0.61
46	46	0.394
47	47	0.128
48	48	0.329
49	49	0.0929
5	5	0.863
50	50	0.978
51	51	0.124
52	52	0.204
53	53	0.634
54	54	0.296
55	55	0.162
56	56	0.317
57	57	0.688
58	58	0.108
59	59	0.0101
6	6	0.65
60	60	0.0752
61	61	0.293
62	62	0.0388
63	63	0.589
64	64	0.526
65	65	0.26
66	66	0.945
67	67	0.911
68	68	0.94
69	69	0.526
7	7	0.0466
70	70	0.164
71	71	0.189
72	72	0.372
73	73	0.0822
74	74	0.269
75	75	0.294
76	76	0.397
77	77	0.052
78	78	0.153
79	79	0.576
8	8	0.215
80	80	0.205
81	81	0.397
82	82	0.0595
83	83	0.315
84	84	0.684
85	85	0.194
86	86	0.885
87	87	0.425
88	88	0.873
89	89	0.0342
9	9	0.279
90	90	0.766
91	91	0.52
92	92	0.283
93	93	0.819
94	94	0.585
95	95	0.0534
96	96	0.0968
97	97	0.638
98	98	0.00228
99	99	0.366

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10745

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100919 8305C cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002046 (thyroid gland)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0103209 (anaplastic thyroid cancer cell line sample)
0101610 (thyroid cancer cell line sample)
0100919 (8305C cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001042,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001557,UBERON:0002046,UBERON:0002050,UBERON:0002368,UBERON:0002530,UBERON:0002532,UBERON:0003091,UBERON:0003104,UBERON:0004117,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005291,UBERON:0005423,UBERON:0005911,UBERON:0006562,UBERON:0007026,UBERON:0007123,UBERON:0007689,UBERON:0007690,UBERON:0008814,UBERON:0009142,UBERON:0009145
+|DRA_sample_Accession=CAGE@SAMD00005691
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
+|accession_numbers=CAGE;DRX007826;DRR008698;DRZ000123;DRZ001508;DRZ011473;DRZ012858
-|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002046,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
+|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0103209,FF:0101610,FF:0100919
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.37!233.19!PAX8;;chr15:83953397..83953425,-!p1@BNC1!1.75!63.22!BNC1;;chr14:61116183..61116208,-!p1@SIX1!1.66!163.62!SIX1;;chr10:28034739..28034756,-!p1@MKX!1.56!35.40!MKX;;chr18:19749541..19749557,+!p1@GATA6!1.34!64.11!GATA6;;chr11:31832658..31832681,-!p1@PAX6!1.29!18.37!PAX6;;chr6:10412392..10412409,-!p4@TFAP2A!1.28!20.81!TFAP2A;;chr9:77112244..77112262,+!p1@RORB!1.26!19.15!RORB;;chr20:42543441..42543497,+!p1@TOX2!1.24!72.46!TOX2;;chr2:185463247..185463263,+!p1@ZNF804A!1.16!23.93!ZNF804A;;chr6:34204672..34204692,+!p1@HMGA1!1.11!1339.71!HMGA1;;chr20:42543506..42543549,+!p2@TOX2!1.11!28.72!TOX2;;chr6:34204921..34204939,+!p3@HMGA1!1.08!332.15!HMGA1;;chr2:172967621..172967637,-!p1@DLX2!1.06!28.72!DLX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.05!37.51!BHLHE41;;chr6:45390002..45390023,+!p6@RUNX2!1.03!16.92!RUNX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.00!15.03!TFAP2A;;chr20:6748325..6748352,+!p1@BMP2!1.00!13.25!BMP2;;chr3:157823517..157823562,-!p1@SHOX2!1.00!9.80!SHOX2;;chr12:26277817..26277863,-!p2@BHLHE41!0.99!11.91!BHLHE41;;chr3:141087339..141087387,+!p2@ZBTB38!0.97!87.93!ZBTB38;;chr6:1610293..1610310,+!p1@FOXC1!0.97!14.14!FOXC1;;chr6:28321971..28321995,-!p1@ZNF323!0.97!8.35!ZNF323;;chr9:14314131..14314147,-!p2@NFIB!0.96!46.64!NFIB;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.80!GATA3;;chr6:45390025..45390076,+!p2@RUNX2!0.95!19.59!RUNX2;;chr20:50179368..50179392,-!p2@NFATC2!0.95!10.46!NFATC2;;chr14:61116168..61116180,-!p2@SIX1!0.95!9.02!SIX1;;chr11:34642612..34642646,+!p1@EHF!0.95!8.01!EHF;;chr20:50721803..50721857,-!p2@ZFP64!0.94!12.36!ZFP64;;chr8:55370487..55370503,+!p1@SOX17!0.94!7.79!SOX17;;chr3:141087393..141087426,+!p3@ZBTB38!0.93!30.61!ZBTB38;;chr9:14314566..14314618,-!p1@NFIB!0.91!90.27!NFIB;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.06!HMGA2;;chr6:45390300..45390335,+!p4@RUNX2!0.91!11.24!RUNX2;;chr6:28321909..28321965,-!p3@ZNF323!0.91!7.12!ZNF323;;chr9:100615499..100615519,+!p1@FOXE1!0.91!7.12!FOXE1;;chr9:77112225..77112238,+!p2@RORB!0.89!6.79!RORB;;chr15:83953373..83953386,-!p2@BNC1!0.89!6.68!BNC1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.88!86.26!ZC3H12A;;chr19:45252008..45252024,+!p2@BCL3!0.88!22.48!BCL3;;chr6:45389835..45389861,+!p7@RUNX2!0.88!10.91!RUNX2;;chr20:39317868..39317884,-!p1@MAFB!0.87!80.14!MAFB;;chr11:65667884..65667895,-!p2@FOSL1!0.86!25.49!FOSL1;;chr17:41622765..41622821,-!p2@ETV4!0.86!9.68!ETV4;;chr2:200323414..200323455,-!p1@SATB2!0.85!13.69!SATB2;;chr2:101436564..101436647,+!p1@NPAS2!0.84!129.01!NPAS2;;chr20:2673383..2673441,+!p1@EBF4!0.84!9.68!EBF4;;chr22:38598086..38598105,+!p1@MAFF!0.83!65.23!MAFF;;chr6:1312325..1312340,+!p1@FOXQ1!0.83!9.68!FOXQ1;;chr18:19749386..19749404,+!p2@GATA6!0.81!8.01!GATA6;;chr11:65667846..65667868,-!p1@FOSL1!0.80!151.49!FOSL1;;chr2:178128149..178128198,-!p2@NFE2L2!0.80!30.61!NFE2L2;;chr9:14082760..14082775,-!p6@NFIB!0.80!9.02!NFIB;;chr9:4299959..4299974,-!p4@GLIS3!0.80!8.68!GLIS3;;chr2:200322654..200322707,-!p2@SATB2!0.80!8.01!SATB2;;chr9:73029219..73029289,-!p2@KLF9!0.79!16.70!KLF9;;chr6:45390269..45390298,+!p5@RUNX2!0.79!8.90!RUNX2;;chr12:66218836..66218888,+!p1@HMGA2!0.78!50.76!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.78!17.59!TWIST2;;chr22:39916558..39916579,+!p1@ATF4!0.77!1554.87!ATF4;;chr19:45971246..45971265,+!p1@FOSB!0.77!100.40!FOSB;;chr9:14083467..14083483,-!p4@NFIB!0.77!13.02!NFIB;;chr9:14313893..14313908,-!p7@NFIB!0.76!7.01!NFIB;;chr10:8096772..8096787,+!p2@GATA3!0.76!5.79!GATA3;;chr3:101568349..101568365,+!p1@NFKBIZ!0.75!269.14!NFKBIZ;;chr12:26277929..26277955,-!p3@BHLHE41!0.75!6.79!BHLHE41;;chr1:201979703..201979721,+!p2@ELF3!0.75!4.67!ELF3;;chr19:42636586..42636607,-!p1@POU2F2!0.74!13.58!POU2F2;;chr2:192015701..192015743,-!p1@STAT4!0.74!6.34!STAT4;;chr20:48807351..48807384,+!p1@CEBPB!0.73!507.12!CEBPB;;chr19:45908292..45908374,-!p1@PPP1R13L!0.73!43.63!PPP1R13L;;chr7:28448965..28448994,+!p2@CREB5!0.73!16.81!CREB5;;chr6:45389791..45389832,+!p3@RUNX2!0.73!12.13!RUNX2;;chr1:59249645..59249656,-!p4@JUN!0.73!11.91!JUN;;chr5:150284532..150284549,-!p1@ZNF300!0.73!9.68!ZNF300;;chr13:72441315..72441454,-!p1@DACH1!0.73!9.46!DACH1;;chr8:80679993..80680011,-!p1@HEY1!0.73!6.57!HEY1;;chr12:66218003..66218018,+!p9@HMGA2!0.73!5.45!HMGA2;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.34!ETV4;;chr9:102584128..102584144,+!p3@NR4A3!0.72!8.57!NR4A3;;chr9:102584159..102584174,+!p2@NR4A3!0.72!8.24!NR4A3;;chr10:28035133..28035148,-!p3@MKX!0.72!4.23!MKX;;chr2:46524537..46524553,+!p1@EPAS1!0.71!466.38!EPAS1;;chr17:46126136..46126152,+!p1@NFE2L1!0.71!241.21!NFE2L1;;chr20:306489..306564,+!p1@SOX12!0.71!50.53!SOX12;;chr2:157189180..157189290,-!p1@NR4A2!0.71!24.38!NR4A2;;chr3:114343768..114343822,-!p1@ZBTB20!0.71!20.26!ZBTB20;;chr14:73360799..73360817,-!p1@DPF3!0.71!15.92!DPF3;;chr7:19157248..19157268,-!p1@TWIST1!0.71!12.47!TWIST1;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.23!TBX18;;chr5:137801160..137801176,+!p1@EGR1!0.70!458.81!EGR1;;chr18:3450161..3450183,+!p1@TGIF1!0.70!155.61!TGIF1;;chr8:57123815.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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0007123,UBERON:0010316
 |fonse_cell_line=FF:0101120,FF:0101610
 |fonse_cell_line_closure=FF:0101120,FF:0101610
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10428-106D5
-|is_a=DOID:305;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100919
+|is_a=EFO:0002091;;FF:0000210;;FF:0100919
+|is_obsolete=
+|library_id=CNhs10745
+|library_id_phase_based=2:CNhs10745
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10428
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10428
 |name=anaplastic carcinoma cell line:8305C
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10745,LSID692,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=106
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=19.9385
 |sample_age=
+|sample_category=cell lines
 |sample_cell_catalog=RCB1909
 |sample_cell_line=8305C
@@ Line 69: / Line 91: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.1118781386556e-219!GO:0043231;intracellular membrane-bound organelle;1.18931716210051e-173!GO:0043226;organelle;1.32210411155731e-173!GO:0043227;membrane-bound organelle;1.32210411155731e-173!GO:0043229;intracellular organelle;3.5487065767179e-173!GO:0005737;cytoplasm;1.51988582664306e-169!GO:0044444;cytoplasmic part;3.29473804923358e-114!GO:0044422;organelle part;1.04648232793683e-110!GO:0044446;intracellular organelle part;3.1278196160851e-109!GO:0044238;primary metabolic process;4.01992257553663e-87!GO:0044237;cellular metabolic process;4.97067906125322e-87!GO:0043170;macromolecule metabolic process;5.13121057875708e-84!GO:0005515;protein binding;5.82860948691282e-80!GO:0032991;macromolecular complex;1.32658624835848e-76!GO:0030529;ribonucleoprotein complex;4.77414304409965e-75!GO:0005634;nucleus;7.85929864657238e-73!GO:0003723;RNA binding;1.08179715476442e-66!GO:0043233;organelle lumen;7.68776731030566e-66!GO:0031974;membrane-enclosed lumen;7.68776731030566e-66!GO:0044428;nuclear part;1.29507606462453e-65!GO:0005739;mitochondrion;7.92530430901752e-56!GO:0019538;protein metabolic process;2.97874505121519e-51!GO:0043283;biopolymer metabolic process;6.4416551178607e-51!GO:0033036;macromolecule localization;1.35346818387171e-47!GO:0015031;protein transport;1.39347384247265e-47!GO:0010467;gene expression;1.95576882226528e-47!GO:0016043;cellular component organization and biogenesis;3.90650233829103e-47!GO:0006412;translation;1.82679304253214e-46!GO:0044260;cellular macromolecule metabolic process;2.82635763329076e-46!GO:0044267;cellular protein metabolic process;4.05909148783338e-46!GO:0005840;ribosome;1.52676324271752e-44!GO:0045184;establishment of protein localization;4.69950483231529e-44!GO:0008104;protein localization;9.49746690506848e-44!GO:0006396;RNA processing;5.13580537804277e-43!GO:0031090;organelle membrane;1.77127902091268e-42!GO:0031981;nuclear lumen;1.83179576639555e-41!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.74712424534986e-40!GO:0003735;structural constituent of ribosome;9.11161307267924e-38!GO:0046907;intracellular transport;9.76563708713721e-38!GO:0009059;macromolecule biosynthetic process;6.20784854828332e-37!GO:0009058;biosynthetic process;1.82701181096489e-36!GO:0043234;protein complex;8.40873854431081e-36!GO:0016071;mRNA metabolic process;8.40873854431081e-36!GO:0044249;cellular biosynthetic process;9.5736838954609e-35!GO:0044429;mitochondrial part;1.05672789428285e-33!GO:0008380;RNA splicing;1.24939620445692e-33!GO:0005829;cytosol;1.74941064584316e-33!GO:0033279;ribosomal subunit;4.59999876834802e-33!GO:0006886;intracellular protein transport;3.47770381217297e-32!GO:0006397;mRNA processing;7.13639662494583e-31!GO:0031967;organelle envelope;2.51287255178479e-30!GO:0031975;envelope;3.98222082476038e-30!GO:0065003;macromolecular complex assembly;3.84336891634363e-27!GO:0005654;nucleoplasm;2.21942402792372e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.59649645456601e-25!GO:0003676;nucleic acid binding;1.78167553786485e-25!GO:0005681;spliceosome;3.587775821218e-25!GO:0051641;cellular localization;1.25292715091319e-24!GO:0051649;establishment of cellular localization;2.63324633649339e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.00069249314238e-24!GO:0022607;cellular component assembly;1.55239361098978e-23!GO:0016070;RNA metabolic process;1.58838492429029e-23!GO:0043228;non-membrane-bound organelle;3.21120105390487e-22!GO:0043232;intracellular non-membrane-bound organelle;3.21120105390487e-22!GO:0006996;organelle organization and biogenesis;3.44028415166094e-22!GO:0000166;nucleotide binding;1.55527576554416e-21!GO:0044451;nucleoplasm part;2.40266296452842e-21!GO:0019866;organelle inner membrane;1.85775864733378e-20!GO:0005740;mitochondrial envelope;3.41633910107591e-20!GO:0044445;cytosolic part;4.86342999421578e-20!GO:0008134;transcription factor binding;6.78795360405803e-20!GO:0006457;protein folding;8.0034235235992e-20!GO:0031966;mitochondrial membrane;9.63233995905703e-20!GO:0012505;endomembrane system;3.2580498121605e-19!GO:0005743;mitochondrial inner membrane;6.21025180106658e-19!GO:0016874;ligase activity;6.21567217227818e-19!GO:0006119;oxidative phosphorylation;1.19577552216236e-18!GO:0006512;ubiquitin cycle;1.19860858307918e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.28943053516509e-18!GO:0016462;pyrophosphatase activity;1.3842176706215e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.96781164737792e-18!GO:0017111;nucleoside-triphosphatase activity;6.94233271878495e-18!GO:0005794;Golgi apparatus;1.19816078420922e-17!GO:0022618;protein-RNA complex assembly;2.42591660215454e-17!GO:0006259;DNA metabolic process;2.51920907600087e-17!GO:0015934;large ribosomal subunit;3.69760280533642e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;9.91938302300198e-17!GO:0048770;pigment granule;1.13557985273595e-16!GO:0042470;melanosome;1.13557985273595e-16!GO:0019941;modification-dependent protein catabolic process;1.25328182818951e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.25328182818951e-16!GO:0015935;small ribosomal subunit;1.25328182818951e-16!GO:0006605;protein targeting;1.5005329024157e-16!GO:0043412;biopolymer modification;2.37580944230577e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.08276972926357e-16!GO:0044257;cellular protein catabolic process;3.48438864681118e-16!GO:0031980;mitochondrial lumen;5.54606872478018e-16!GO:0005759;mitochondrial matrix;5.54606872478018e-16!GO:0008135;translation factor activity, nucleic acid binding;1.10264591720743e-15!GO:0043285;biopolymer catabolic process;1.14671627427636e-15!GO:0005730;nucleolus;1.18735177049573e-15!GO:0005783;endoplasmic reticulum;1.28026871667649e-15!GO:0044265;cellular macromolecule catabolic process;1.35491941461027e-15!GO:0032553;ribonucleotide binding;1.64585406425779e-15!GO:0032555;purine ribonucleotide binding;1.64585406425779e-15!GO:0048193;Golgi vesicle transport;3.73243503342209e-15!GO:0050794;regulation of cellular process;3.97408746746881e-15!GO:0017076;purine nucleotide binding;4.9293125271416e-15!GO:0000502;proteasome complex (sensu Eukaryota);5.88499280335567e-15!GO:0044455;mitochondrial membrane part;6.38680793729895e-15!GO:0016192;vesicle-mediated transport;9.47249858441145e-15!GO:0051082;unfolded protein binding;1.1170638311884e-14!GO:0006464;protein modification process;1.27456392224382e-14!GO:0030163;protein catabolic process;1.27456392224382e-14!GO:0051186;cofactor metabolic process;6.83869168267221e-14!GO:0009057;macromolecule catabolic process;1.16051753374438e-13!GO:0012501;programmed cell death;1.16051753374438e-13!GO:0006915;apoptosis;3.59926026577537e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.62887372611918e-13!GO:0006366;transcription from RNA polymerase II promoter;8.85096198253872e-13!GO:0044432;endoplasmic reticulum part;1.0033505024941e-12!GO:0005746;mitochondrial respiratory chain;1.16886400154398e-12!GO:0044248;cellular catabolic process;1.37061684930051e-12!GO:0007049;cell cycle;1.47189745326193e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.87131600167246e-12!GO:0003743;translation initiation factor activity;2.74589327585049e-12!GO:0008219;cell death;2.74589327585049e-12!GO:0016265;death;2.74589327585049e-12!GO:0048523;negative regulation of cellular process;2.74589327585049e-12!GO:0006913;nucleocytoplasmic transport;2.77189846654476e-12!GO:0005761;mitochondrial ribosome;2.80917068531474e-12!GO:0000313;organellar ribosome;2.80917068531474e-12!GO:0043687;post-translational protein modification;2.80917068531474e-12!GO:0050136;NADH dehydrogenase (quinone) activity;4.88240145205391e-12!GO:0003954;NADH dehydrogenase activity;4.88240145205391e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.88240145205391e-12!GO:0003712;transcription cofactor activity;5.82561198001235e-12!GO:0051169;nuclear transport;6.83791455829085e-12!GO:0016604;nuclear body;7.11614308857459e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.00057484644405e-11!GO:0006732;coenzyme metabolic process;1.44700783024637e-11!GO:0005524;ATP binding;1.97992945912659e-11!GO:0032559;adenyl ribonucleotide binding;3.08852654831625e-11!GO:0006413;translational initiation;3.47393160468165e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;4.05628879219862e-11!GO:0000375;RNA splicing, via transesterification reactions;4.05628879219862e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.05628879219862e-11!GO:0005793;ER-Golgi intermediate compartment;4.23487799524849e-11!GO:0005635;nuclear envelope;4.90605612845151e-11!GO:0050789;regulation of biological process;7.5791541281896e-11!GO:0030554;adenyl nucleotide binding;1.02205733761763e-10!GO:0048519;negative regulation of biological process;1.24452164230924e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.05663932848714e-10!GO:0006446;regulation of translational initiation;2.88434386106623e-10!GO:0031965;nuclear membrane;2.97625973149948e-10!GO:0008639;small protein conjugating enzyme activity;3.21101678153287e-10!GO:0030964;NADH dehydrogenase complex (quinone);3.32665580711101e-10!GO:0045271;respiratory chain complex I;3.32665580711101e-10!GO:0005747;mitochondrial respiratory chain complex I;3.32665580711101e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.65102725937526e-10!GO:0042773;ATP synthesis coupled electron transport;3.65102725937526e-10!GO:0006974;response to DNA damage stimulus;6.19626486781737e-10!GO:0004842;ubiquitin-protein ligase activity;6.56737252049718e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.6250732916098e-10!GO:0016607;nuclear speck;9.75569934834656e-10!GO:0019787;small conjugating protein ligase activity;9.88229749136223e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.20754002451379e-09!GO:0003924;GTPase activity;1.23919332421625e-09!GO:0017038;protein import;1.28803976119901e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.49317917166546e-09!GO:0042254;ribosome biogenesis and assembly;3.40701620518239e-09!GO:0006399;tRNA metabolic process;5.31447915783241e-09!GO:0009055;electron carrier activity;5.35948120727602e-09!GO:0022402;cell cycle process;6.15827705771494e-09!GO:0005789;endoplasmic reticulum membrane;6.6723621241799e-09!GO:0051726;regulation of cell cycle;6.71525512730239e-09!GO:0005768;endosome;6.77115780641553e-09!GO:0009259;ribonucleotide metabolic process;9.29545039740872e-09!GO:0000074;regulation of progression through cell cycle;1.09274094154569e-08!GO:0016881;acid-amino acid ligase activity;1.38455189140016e-08!GO:0004386;helicase activity;1.38455189140016e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.39901702794654e-08!GO:0016564;transcription repressor activity;1.7067080460636e-08!GO:0006163;purine nucleotide metabolic process;1.78890915674616e-08!GO:0043067;regulation of programmed cell death;1.80589926555806e-08!GO:0006164;purine nucleotide biosynthetic process;1.99368501007189e-08!GO:0042981;regulation of apoptosis;2.12410466128505e-08!GO:0048522;positive regulation of cellular process;2.3274794403812e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.4149646978255e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.4149646978255e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.4149646978255e-08!GO:0044453;nuclear membrane part;2.42366276650223e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.61998903033448e-08!GO:0006461;protein complex assembly;2.66242875166615e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.20763260659871e-08!GO:0019222;regulation of metabolic process;3.47548103739691e-08!GO:0031324;negative regulation of cellular metabolic process;3.48300747368358e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.05978734354735e-08!GO:0043038;amino acid activation;4.05978734354735e-08!GO:0006418;tRNA aminoacylation for protein translation;4.05978734354735e-08!GO:0043039;tRNA aminoacylation;4.05978734354735e-08!GO:0051246;regulation of protein metabolic process;4.18377653059501e-08!GO:0009150;purine ribonucleotide metabolic process;4.19088722537546e-08!GO:0051188;cofactor biosynthetic process;4.2683006316653e-08!GO:0009260;ribonucleotide biosynthetic process;4.39761700304401e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.44228838688632e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.63287749345518e-08!GO:0044431;Golgi apparatus part;5.83943511965639e-08!GO:0006281;DNA repair;7.76488490048264e-08!GO:0015986;ATP synthesis coupled proton transport;8.0275421444825e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.0275421444825e-08!GO:0009060;aerobic respiration;8.92802117469107e-08!GO:0016887;ATPase activity;1.0538952511717e-07!GO:0009056;catabolic process;1.20619530060487e-07!GO:0008565;protein transporter activity;1.44878191625045e-07!GO:0051170;nuclear import;1.63270715831675e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.6517903511106e-07!GO:0043069;negative regulation of programmed cell death;1.73183210170212e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.73183210170212e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.25737262969431e-07!GO:0006916;anti-apoptosis;2.4584562561554e-07!GO:0005525;GTP binding;2.63173291356273e-07!GO:0006606;protein import into nucleus;2.88154410799246e-07!GO:0005667;transcription factor complex;3.0463048347725e-07!GO:0008026;ATP-dependent helicase activity;3.07775699060755e-07!GO:0030120;vesicle coat;3.4488009662836e-07!GO:0030662;coated vesicle membrane;3.4488009662836e-07!GO:0043066;negative regulation of apoptosis;3.55050511434802e-07!GO:0003714;transcription corepressor activity;4.11018475856659e-07!GO:0006403;RNA localization;4.11018475856659e-07!GO:0065007;biological regulation;4.20210805107849e-07!GO:0006323;DNA packaging;4.37345886773761e-07!GO:0042623;ATPase activity, coupled;4.97321675828977e-07!GO:0009108;coenzyme biosynthetic process;5.03962088326733e-07!GO:0045333;cellular respiration;5.06164335909698e-07!GO:0050657;nucleic acid transport;5.06164335909698e-07!GO:0051236;establishment of RNA localization;5.06164335909698e-07!GO:0050658;RNA transport;5.06164335909698e-07!GO:0009719;response to endogenous stimulus;5.87329121441149e-07!GO:0051276;chromosome organization and biogenesis;6.3630017490849e-07!GO:0019829;cation-transporting ATPase activity;6.5388339463248e-07!GO:0009892;negative regulation of metabolic process;6.78069830060352e-07!GO:0031252;leading edge;6.92716209122877e-07!GO:0009141;nucleoside triphosphate metabolic process;7.51391681663575e-07!GO:0045786;negative regulation of progression through cell cycle;7.51391681663575e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.62238745091244e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.66652578839796e-07!GO:0005643;nuclear pore;7.77934472688502e-07!GO:0048475;coated membrane;8.53328388308708e-07!GO:0030117;membrane coat;8.53328388308708e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.0331763625418e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.0331763625418e-06!GO:0016481;negative regulation of transcription;1.14341553984051e-06!GO:0019899;enzyme binding;1.15149685141619e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.20822533962111e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.20822533962111e-06!GO:0006793;phosphorus metabolic process;1.20822533962111e-06!GO:0006796;phosphate metabolic process;1.20822533962111e-06!GO:0046034;ATP metabolic process;1.21691462756088e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.2478285971834e-06!GO:0043566;structure-specific DNA binding;1.31030999530497e-06!GO:0006754;ATP biosynthetic process;1.37698513935441e-06!GO:0006753;nucleoside phosphate metabolic process;1.37698513935441e-06!GO:0032561;guanyl ribonucleotide binding;1.48006794669687e-06!GO:0019001;guanyl nucleotide binding;1.48006794669687e-06!GO:0007243;protein kinase cascade;1.52491092831194e-06!GO:0016563;transcription activator activity;1.55055133713469e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.60722919804875e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.60722919804875e-06!GO:0007005;mitochondrion organization and biogenesis;1.8199588601365e-06!GO:0065002;intracellular protein transport across a membrane;1.88435606150335e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.94208345323916e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.5966365579936e-06!GO:0016568;chromatin modification;3.11965895701104e-06!GO:0032446;protein modification by small protein conjugation;3.62695731687937e-06!GO:0006099;tricarboxylic acid cycle;3.79668897282449e-06!GO:0046356;acetyl-CoA catabolic process;3.79668897282449e-06!GO:0005770;late endosome;4.04255062396713e-06!GO:0044440;endosomal part;4.35357504273412e-06!GO:0010008;endosome membrane;4.35357504273412e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.92438742360561e-06!GO:0016567;protein ubiquitination;5.01686596117039e-06!GO:0000278;mitotic cell cycle;5.10585970258118e-06!GO:0000139;Golgi membrane;5.43374976322322e-06!GO:0016310;phosphorylation;5.79535432627797e-06!GO:0003713;transcription coactivator activity;6.85041914592383e-06!GO:0015078;hydrogen ion transmembrane transporter activity;7.28835476667731e-06!GO:0031323;regulation of cellular metabolic process;7.3158730301031e-06!GO:0016787;hydrolase activity;7.765237181627e-06!GO:0006084;acetyl-CoA metabolic process;8.73021943594124e-06!GO:0004298;threonine endopeptidase activity;9.18384177004293e-06!GO:0006613;cotranslational protein targeting to membrane;9.19419997623194e-06!GO:0031988;membrane-bound vesicle;9.31154533840218e-06!GO:0009117;nucleotide metabolic process;1.0871227057471e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.19197767636992e-05!GO:0005788;endoplasmic reticulum lumen;1.28089452453187e-05!GO:0000151;ubiquitin ligase complex;1.33043942488797e-05!GO:0006364;rRNA processing;1.37888730635444e-05!GO:0065004;protein-DNA complex assembly;1.40664908839182e-05!GO:0046930;pore complex;1.4854147926044e-05!GO:0009109;coenzyme catabolic process;1.63577194934283e-05!GO:0016072;rRNA metabolic process;1.6788255981986e-05!GO:0000245;spliceosome assembly;1.76917862808911e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.79305925106351e-05!GO:0051028;mRNA transport;1.84976569445232e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.85255738110905e-05!GO:0051187;cofactor catabolic process;2.00321882588152e-05!GO:0048518;positive regulation of biological process;2.05692787378997e-05!GO:0005798;Golgi-associated vesicle;2.06703048376665e-05!GO:0016740;transferase activity;2.14173941151045e-05!GO:0045259;proton-transporting ATP synthase complex;2.16555040678517e-05!GO:0006350;transcription;2.17201523261254e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.3770693213411e-05!GO:0005694;chromosome;2.39817249500254e-05!GO:0003697;single-stranded DNA binding;2.48152497290655e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.67761665234833e-05!GO:0005769;early endosome;2.77388096027524e-05!GO:0045893;positive regulation of transcription, DNA-dependent;2.83167774182209e-05!GO:0006752;group transfer coenzyme metabolic process;2.92681431288261e-05!GO:0031982;vesicle;3.47087800002968e-05!GO:0005773;vacuole;3.69838772063775e-05!GO:0016779;nucleotidyltransferase activity;4.20570786384375e-05!GO:0007264;small GTPase mediated signal transduction;4.45552509542306e-05!GO:0031410;cytoplasmic vesicle;4.92891070032669e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.03743167594256e-05!GO:0065009;regulation of a molecular function;5.69775774663329e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.38318243487169e-05!GO:0006260;DNA replication;7.02795068164062e-05!GO:0010468;regulation of gene expression;8.23475888605624e-05!GO:0045941;positive regulation of transcription;0.000100247378972257!GO:0006333;chromatin assembly or disassembly;0.000118801675056549!GO:0043623;cellular protein complex assembly;0.000118801675056549!GO:0000785;chromatin;0.000129264382864181!GO:0044427;chromosomal part;0.000129946331113833!GO:0003690;double-stranded DNA binding;0.000130675122584609!GO:0045892;negative regulation of transcription, DNA-dependent;0.000131347569086627!GO:0051427;hormone receptor binding;0.000132135800977175!GO:0008361;regulation of cell size;0.000137907015148566!GO:0043021;ribonucleoprotein binding;0.000139916491044344!GO:0009967;positive regulation of signal transduction;0.000145201868769322!GO:0051789;response to protein stimulus;0.000148722522967782!GO:0006986;response to unfolded protein;0.000148722522967782!GO:0005762;mitochondrial large ribosomal subunit;0.000150361841374619!GO:0000315;organellar large ribosomal subunit;0.000150361841374619!GO:0016197;endosome transport;0.000182062977820977!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000191539075249351!GO:0006612;protein targeting to membrane;0.000206956101923269!GO:0000323;lytic vacuole;0.000225645064958181!GO:0005764;lysosome;0.000225645064958181!GO:0016859;cis-trans isomerase activity;0.000227746896154573!GO:0030029;actin filament-based process;0.000230265849944883!GO:0035257;nuclear hormone receptor binding;0.000244494701280483!GO:0030867;rough endoplasmic reticulum membrane;0.000266033752251839!GO:0003724;RNA helicase activity;0.000267810373481772!GO:0033116;ER-Golgi intermediate compartment membrane;0.000269004513209152!GO:0005048;signal sequence binding;0.000273092648411164!GO:0006891;intra-Golgi vesicle-mediated transport;0.000319213169323212!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00031973110453272!GO:0016049;cell growth;0.00031973110453272!GO:0000314;organellar small ribosomal subunit;0.00031973110453272!GO:0005763;mitochondrial small ribosomal subunit;0.00031973110453272!GO:0008092;cytoskeletal protein binding;0.000340798498707699!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000409868891752207!GO:0001558;regulation of cell growth;0.000425441896654518!GO:0016853;isomerase activity;0.000425977278832444!GO:0048471;perinuclear region of cytoplasm;0.000433404239631909!GO:0007050;cell cycle arrest;0.000441343126280845!GO:0015980;energy derivation by oxidation of organic compounds;0.000453360721403214!GO:0016044;membrane organization and biogenesis;0.000511058772935221!GO:0016363;nuclear matrix;0.000518558048406039!GO:0005813;centrosome;0.000527745929620688!GO:0045454;cell redox homeostasis;0.000534606040577022!GO:0003729;mRNA binding;0.000625763908681176!GO:0032774;RNA biosynthetic process;0.00063526991802914!GO:0008047;enzyme activator activity;0.000674089708972706!GO:0030133;transport vesicle;0.000684685561665354!GO:0006351;transcription, DNA-dependent;0.000719852687932965!GO:0008250;oligosaccharyl transferase complex;0.000758083671533976!GO:0051168;nuclear export;0.000784954232062681!GO:0009165;nucleotide biosynthetic process;0.000822947435193618!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000825005329920844!GO:0005905;coated pit;0.000848077025376478!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00086180246818864!GO:0048468;cell development;0.000941005542751132!GO:0004860;protein kinase inhibitor activity;0.000964291269218453!GO:0004576;oligosaccharyl transferase activity;0.000965628398481265!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000971396990486043!GO:0008654;phospholipid biosynthetic process;0.000980236240357491!GO:0001726;ruffle;0.000987977729807216!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0010249274575316!GO:0015630;microtubule cytoskeleton;0.00103831311598028!GO:0003899;DNA-directed RNA polymerase activity;0.00109555574875088!GO:0005815;microtubule organizing center;0.00126087460213693!GO:0030663;COPI coated vesicle membrane;0.00126352200716189!GO:0030126;COPI vesicle coat;0.00126352200716189!GO:0004177;aminopeptidase activity;0.00128628493848419!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00136372274078692!GO:0009966;regulation of signal transduction;0.00145491370924564!GO:0006402;mRNA catabolic process;0.00150318686982691!GO:0005885;Arp2/3 protein complex;0.00165577043005509!GO:0006383;transcription from RNA polymerase III promoter;0.00168139775503787!GO:0005096;GTPase activator activity;0.00168968690431949!GO:0019843;rRNA binding;0.001864022022358!GO:0018196;peptidyl-asparagine modification;0.00191205856754471!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00191205856754471!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00196127109131844!GO:0006839;mitochondrial transport;0.00196713438521!GO:0031968;organelle outer membrane;0.0020271812603916!GO:0048500;signal recognition particle;0.00205697885944791!GO:0000049;tRNA binding;0.00205697885944791!GO:0045449;regulation of transcription;0.00209509155592468!GO:0051920;peroxiredoxin activity;0.00212443180848683!GO:0007242;intracellular signaling cascade;0.00215550878508184!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00219559160209201!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00219559160209201!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00219559160209201!GO:0019867;outer membrane;0.00226212665908253!GO:0030137;COPI-coated vesicle;0.00240392956963178!GO:0045792;negative regulation of cell size;0.00243694623946318!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0025249035987453!GO:0043681;protein import into mitochondrion;0.00262322616631983!GO:0006892;post-Golgi vesicle-mediated transport;0.00273819731849574!GO:0016491;oxidoreductase activity;0.00273853072941379!GO:0031072;heat shock protein binding;0.00275495253511645!GO:0030134;ER to Golgi transport vesicle;0.00276885601664045!GO:0008186;RNA-dependent ATPase activity;0.00298488772240851!GO:0035258;steroid hormone receptor binding;0.00301915240454099!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0030223189396097!GO:0045045;secretory pathway;0.00315204991208134!GO:0006626;protein targeting to mitochondrion;0.00326676932134217!GO:0006091;generation of precursor metabolites and energy;0.00336647956824661!GO:0022403;cell cycle phase;0.0034712171673537!GO:0051252;regulation of RNA metabolic process;0.0034712171673537!GO:0043488;regulation of mRNA stability;0.00347604397160633!GO:0043487;regulation of RNA stability;0.00347604397160633!GO:0000087;M phase of mitotic cell cycle;0.00349588826244901!GO:0008312;7S RNA binding;0.00372367716822423!GO:0030308;negative regulation of cell growth;0.00373607904512132!GO:0006352;transcription initiation;0.00378967644186905!GO:0051540;metal cluster binding;0.00385711177816265!GO:0051536;iron-sulfur cluster binding;0.00385711177816265!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00411499561552296!GO:0045047;protein targeting to ER;0.00411499561552296!GO:0046489;phosphoinositide biosynthetic process;0.00427794190433324!GO:0005741;mitochondrial outer membrane;0.00428831117315518!GO:0050790;regulation of catalytic activity;0.00428981060702354!GO:0044262;cellular carbohydrate metabolic process;0.00428981060702354!GO:0006414;translational elongation;0.00437397960228706!GO:0030127;COPII vesicle coat;0.00460068280978841!GO:0012507;ER to Golgi transport vesicle membrane;0.00460068280978841!GO:0051101;regulation of DNA binding;0.00460584065201125!GO:0051098;regulation of binding;0.00463446935409357!GO:0030132;clathrin coat of coated pit;0.00463446935409357!GO:0007067;mitosis;0.00470502154590934!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00473189347316549!GO:0030521;androgen receptor signaling pathway;0.00473189347316549!GO:0006520;amino acid metabolic process;0.00518214936096557!GO:0005791;rough endoplasmic reticulum;0.00552110796737318!GO:0043065;positive regulation of apoptosis;0.00561670393162161!GO:0003746;translation elongation factor activity;0.00581930558806509!GO:0007265;Ras protein signal transduction;0.0058222128903497!GO:0016272;prefoldin complex;0.00582839355324626!GO:0033673;negative regulation of kinase activity;0.00603759966892093!GO:0006469;negative regulation of protein kinase activity;0.00603759966892093!GO:0008243;plasminogen activator activity;0.00617926706609782!GO:0006417;regulation of translation;0.00638786001420364!GO:0043068;positive regulation of programmed cell death;0.0064279955438329!GO:0009893;positive regulation of metabolic process;0.00644577437694587!GO:0006401;RNA catabolic process;0.00644577437694587!GO:0019210;kinase inhibitor activity;0.00648323203257831!GO:0045926;negative regulation of growth;0.00648323203257831!GO:0048487;beta-tubulin binding;0.00648323203257831!GO:0008270;zinc ion binding;0.00649561200417567!GO:0051539;4 iron, 4 sulfur cluster binding;0.00664486651449065!GO:0006334;nucleosome assembly;0.00665139076840531!GO:0008234;cysteine-type peptidase activity;0.00673290441801982!GO:0006984;ER-nuclear signaling pathway;0.00687936399757329!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.006911056362567!GO:0051087;chaperone binding;0.00727802582177418!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0073331589598145!GO:0005099;Ras GTPase activator activity;0.007365869449043!GO:0030658;transport vesicle membrane;0.00738136385203896!GO:0042802;identical protein binding;0.00740886856514032!GO:0031901;early endosome membrane;0.00756070805400836!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00764553545187564!GO:0004004;ATP-dependent RNA helicase activity;0.00771408908488348!GO:0030659;cytoplasmic vesicle membrane;0.00771408908488348!GO:0040008;regulation of growth;0.00792561531280775!GO:0030880;RNA polymerase complex;0.00792561531280775!GO:0003711;transcription elongation regulator activity;0.00805965989568842!GO:0043433;negative regulation of transcription factor activity;0.00808638123104048!GO:0046483;heterocycle metabolic process;0.00816285548630704!GO:0007006;mitochondrial membrane organization and biogenesis;0.00828413369520209!GO:0030027;lamellipodium;0.00837727814582431!GO:0051329;interphase of mitotic cell cycle;0.00870398901053295!GO:0046474;glycerophospholipid biosynthetic process;0.00880091795384717!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.00892545115429752!GO:0046914;transition metal ion binding;0.00917745281808486!GO:0007010;cytoskeleton organization and biogenesis;0.00921095643493832!GO:0008033;tRNA processing;0.00938276109205635!GO:0017166;vinculin binding;0.00994545806552644!GO:0045936;negative regulation of phosphate metabolic process;0.0100999403177841!GO:0006355;regulation of transcription, DNA-dependent;0.0101348088163318!GO:0050681;androgen receptor binding;0.010254211950775!GO:0043284;biopolymer biosynthetic process;0.010254211950775!GO:0031497;chromatin assembly;0.0111908930523222!GO:0030176;integral to endoplasmic reticulum membrane;0.0112859493004196!GO:0051348;negative regulation of transferase activity;0.0113412861911241!GO:0031902;late endosome membrane;0.0116077278041199!GO:0006595;polyamine metabolic process;0.0117468121987818!GO:0008139;nuclear localization sequence binding;0.011869231905972!GO:0000339;RNA cap binding;0.0119906552373307!GO:0005083;small GTPase regulator activity;0.0120336278393868!GO:0006405;RNA export from nucleus;0.0120410599075081!GO:0009615;response to virus;0.0122709459090713!GO:0051301;cell division;0.0125236187537134!GO:0006807;nitrogen compound metabolic process;0.012569042667843!GO:0006518;peptide metabolic process;0.0126462857214063!GO:0043022;ribosome binding;0.0126581762464242!GO:0006497;protein amino acid lipidation;0.012743136743322!GO:0031625;ubiquitin protein ligase binding;0.0129382862779276!GO:0030118;clathrin coat;0.013039754114621!GO:0009889;regulation of biosynthetic process;0.013272139602954!GO:0000118;histone deacetylase complex;0.0134337658905783!GO:0008283;cell proliferation;0.0134571130024437!GO:0044452;nucleolar part;0.0136310852362775!GO:0030032;lamellipodium biogenesis;0.0137101011302713!GO:0030518;steroid hormone receptor signaling pathway;0.0138200914104518!GO:0032940;secretion by cell;0.013859707108591!GO:0006509;membrane protein ectodomain proteolysis;0.0145519895146378!GO:0033619;membrane protein proteolysis;0.0145519895146378!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.014659713840755!GO:0015399;primary active transmembrane transporter activity;0.014659713840755!GO:0016251;general RNA polymerase II transcription factor activity;0.0148373316460964!GO:0006376;mRNA splice site selection;0.0150974823235641!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0150974823235641!GO:0051059;NF-kappaB binding;0.0151019550677383!GO:0044433;cytoplasmic vesicle part;0.0152207261221359!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0152207261221359!GO:0000428;DNA-directed RNA polymerase complex;0.0152207261221359!GO:0046822;regulation of nucleocytoplasmic transport;0.0155265864982621!GO:0008180;signalosome;0.0157446367147958!GO:0005869;dynactin complex;0.0158292221754359!GO:0051325;interphase;0.0159380560549305!GO:0005774;vacuolar membrane;0.0159932782855069!GO:0012506;vesicle membrane;0.0161130241632102!GO:0003702;RNA polymerase II transcription factor activity;0.0164636510970059!GO:0043549;regulation of kinase activity;0.0164636510970059!GO:0016584;nucleosome positioning;0.0164636510970059!GO:0003684;damaged DNA binding;0.0164636510970059!GO:0005684;U2-dependent spliceosome;0.0168913128750487!GO:0018193;peptidyl-amino acid modification;0.017055661812433!GO:0006818;hydrogen transport;0.0171439820744931!GO:0030041;actin filament polymerization;0.0171667305358538!GO:0051338;regulation of transferase activity;0.0173016591199603!GO:0008632;apoptotic program;0.0173201538459204!GO:0032507;maintenance of cellular protein localization;0.0173201538459204!GO:0006261;DNA-dependent DNA replication;0.0173201538459204!GO:0050811;GABA receptor binding;0.0176860113019148!GO:0000096;sulfur amino acid metabolic process;0.0179256413424196!GO:0048144;fibroblast proliferation;0.018203986273352!GO:0048145;regulation of fibroblast proliferation;0.018203986273352!GO:0031529;ruffle organization and biogenesis;0.0185653088390826!GO:0030660;Golgi-associated vesicle membrane;0.0185903519859622!GO:0048146;positive regulation of fibroblast proliferation;0.0191226630111582!GO:0003779;actin binding;0.0191484019669598!GO:0006950;response to stress;0.0197203476355178!GO:0031326;regulation of cellular biosynthetic process;0.0197483304435867!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0198398094759853!GO:0022406;membrane docking;0.0200003690673279!GO:0048278;vesicle docking;0.0200003690673279!GO:0005637;nuclear inner membrane;0.020122724852327!GO:0022415;viral reproductive process;0.0203493943115777!GO:0001952;regulation of cell-matrix adhesion;0.0204662556669228!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0208846086024717!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0208846086024717!GO:0046467;membrane lipid biosynthetic process;0.021095804262653!GO:0006607;NLS-bearing substrate import into nucleus;0.0212166638564004!GO:0030384;phosphoinositide metabolic process;0.0212166638564004!GO:0051287;NAD binding;0.0213148547055868!GO:0046426;negative regulation of JAK-STAT cascade;0.0224156722253331!GO:0007030;Golgi organization and biogenesis;0.0225590272880874!GO:0015992;proton transport;0.0226229000688988!GO:0042326;negative regulation of phosphorylation;0.0233291953198589!GO:0019752;carboxylic acid metabolic process;0.0233674168426132!GO:0008097;5S rRNA binding;0.0234310205352853!GO:0030145;manganese ion binding;0.0236018618542131!GO:0031325;positive regulation of cellular metabolic process;0.023616114847551!GO:0043407;negative regulation of MAP kinase activity;0.0238881085303264!GO:0006082;organic acid metabolic process;0.0239559072460684!GO:0030031;cell projection biogenesis;0.0245749360596294!GO:0003682;chromatin binding;0.0249376913083228!GO:0030224;monocyte differentiation;0.0255131630845239!GO:0001666;response to hypoxia;0.0257263635526902!GO:0005100;Rho GTPase activator activity;0.0259962841441837!GO:0042158;lipoprotein biosynthetic process;0.0259962841441837!GO:0006354;RNA elongation;0.0263106687533058!GO:0007004;telomere maintenance via telomerase;0.0265460597299768!GO:0043495;protein anchor;0.0265462903794159!GO:0051270;regulation of cell motility;0.0274885312482037!GO:0000287;magnesium ion binding;0.0275149345648608!GO:0004674;protein serine/threonine kinase activity;0.0275389011996411!GO:0000059;protein import into nucleus, docking;0.0278998514743933!GO:0003678;DNA helicase activity;0.0282355124649923!GO:0005832;chaperonin-containing T-complex;0.0286190809587928!GO:0045859;regulation of protein kinase activity;0.0291301648378483!GO:0006302;double-strand break repair;0.0293904630265129!GO:0006904;vesicle docking during exocytosis;0.0298024994354201!GO:0008637;apoptotic mitochondrial changes;0.0302116363416031!GO:0009308;amine metabolic process;0.0303317467134588!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0305340802907452!GO:0046519;sphingoid metabolic process;0.0311345306188725!GO:0051052;regulation of DNA metabolic process;0.0314019726239851!GO:0006897;endocytosis;0.0316577341356966!GO:0010324;membrane invagination;0.0316577341356966!GO:0000060;protein import into nucleus, translocation;0.0318639956653695!GO:0031543;peptidyl-proline dioxygenase activity;0.0319784994816282!GO:0004680;casein kinase activity;0.0319784994816282!GO:0008154;actin polymerization and/or depolymerization;0.0319808546576802!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0321650115793349!GO:0031124;mRNA 3'-end processing;0.0324106041163792!GO:0000792;heterochromatin;0.032760223740123!GO:0032200;telomere organization and biogenesis;0.033403677120434!GO:0000723;telomere maintenance;0.033403677120434!GO:0035035;histone acetyltransferase binding;0.0336971404353559!GO:0045428;regulation of nitric oxide biosynthetic process;0.0338493195817344!GO:0051272;positive regulation of cell motility;0.0342276190094138!GO:0040017;positive regulation of locomotion;0.0342276190094138!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0344537516298383!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0344537516298383!GO:0007034;vacuolar transport;0.0347240978090282!GO:0032906;transforming growth factor-beta2 production;0.0347880329372651!GO:0032909;regulation of transforming growth factor-beta2 production;0.0347880329372651!GO:0051651;maintenance of cellular localization;0.0350924350266957!GO:0006650;glycerophospholipid metabolic process;0.0352811859674496!GO:0051128;regulation of cellular component organization and biogenesis;0.0353979849653172!GO:0044437;vacuolar part;0.0354468833013474!GO:0005669;transcription factor TFIID complex;0.0355232968585485!GO:0022890;inorganic cation transmembrane transporter activity;0.0355232968585485!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0355479359690466!GO:0007040;lysosome organization and biogenesis;0.0359561438794968!GO:0016407;acetyltransferase activity;0.0377195195723027!GO:0009112;nucleobase metabolic process;0.0377838268761561!GO:0005862;muscle thin filament tropomyosin;0.0387984383332641!GO:0007041;lysosomal transport;0.0389069881853808!GO:0006506;GPI anchor biosynthetic process;0.0395227685356465!GO:0030119;AP-type membrane coat adaptor complex;0.0395555543252315!GO:0007162;negative regulation of cell adhesion;0.0395865820793098!GO:0022408;negative regulation of cell-cell adhesion;0.0396445195319497!GO:0006740;NADPH regeneration;0.0396445195319497!GO:0006098;pentose-phosphate shunt;0.0396445195319497!GO:0008286;insulin receptor signaling pathway;0.0396445195319497!GO:0005765;lysosomal membrane;0.040109785073348!GO:0033239;negative regulation of amine metabolic process;0.0403093250858578!GO:0045763;negative regulation of amino acid metabolic process;0.0403093250858578!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0403093250858578!GO:0008538;proteasome activator activity;0.0403093250858578!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0410312229691795!GO:0006917;induction of apoptosis;0.0425583292266502!GO:0019798;procollagen-proline dioxygenase activity;0.0427934663186299!GO:0043624;cellular protein complex disassembly;0.0431847744160888!GO:0030522;intracellular receptor-mediated signaling pathway;0.0433974017518624!GO:0006378;mRNA polyadenylation;0.0439147356092407!GO:0007033;vacuole organization and biogenesis;0.0448285452283579!GO:0032318;regulation of Ras GTPase activity;0.0450679785690907!GO:0030984;kininogen binding;0.0455319937177315!GO:0004213;cathepsin B activity;0.0455319937177315!GO:0045185;maintenance of protein localization;0.0458419728279803!GO:0006519;amino acid and derivative metabolic process;0.0459107437435229!GO:0006611;protein export from nucleus;0.0462262990017143!GO:0016301;kinase activity;0.0473425483412638!GO:0017134;fibroblast growth factor binding;0.0473712916418682!GO:0043087;regulation of GTPase activity;0.0474096439689378!GO:0030833;regulation of actin filament polymerization;0.0474096439689378!GO:0009303;rRNA transcription;0.0476541318994735!GO:0006505;GPI anchor metabolic process;0.0480240015847657!GO:0040011;locomotion;0.0480240015847657!GO:0030125;clathrin vesicle coat;0.0483263582762223!GO:0030665;clathrin coated vesicle membrane;0.0483263582762223!GO:0005720;nuclear heterochromatin;0.0485393196829018!GO:0030100;regulation of endocytosis;0.0485393196829018!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0485393196829018!GO:0015002;heme-copper terminal oxidase activity;0.0485393196829018!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0485393196829018!GO:0004129;cytochrome-c oxidase activity;0.0485393196829018!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.048662536930507!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.048662536930507!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.048662536930507!GO:0006289;nucleotide-excision repair;0.0488583947003823!GO:0006338;chromatin remodeling;0.0490714062022498!GO:0019783;small conjugating protein-specific protease activity;0.0493518689666274!GO:0007021;tubulin folding;0.0493518689666274!GO:0050662;coenzyme binding;0.0497373054925989!GO:0031371;ubiquitin conjugating enzyme complex;0.0499282176603185
 |sample_id=10428
 |sample_note=machine failed, remainder reloaded, low amount
@@ Line 76: / Line 99: @@
 |sample_tissue=thyroid
 |top_motifs=NKX2-1,4:2.02671835886;NKX3-1:1.617003361;EN1,2:1.47844367434;NFIX:1.31515308015;bHLH_family:1.15622804955;HBP1_HMGB_SSRP1_UBTF:1.09678594036;HIF1A:1.01475358668;EVI1:1.01151918087;AIRE:1.00106992477;PAX5:1.00054613577;TFDP1:0.973749769304;RXR{A,B,G}:0.924602930724;FOXA2:0.915437000062;DBP:0.908729789657;PAX4:0.905622221986;GTF2A1,2:0.87064598238;TBX4,5:0.864825477491;ZBTB16:0.809843093262;ELK1,4_GABP{A,B1}:0.804001927021;ATF6:0.785413927192;FOXP1:0.770953720226;ZFP161:0.769820581701;PITX1..3:0.753722635774;HOX{A4,D4}:0.6787277893;ONECUT1,2:0.675462133912;POU1F1:0.634033534893;ALX1:0.596210382622;AHR_ARNT_ARNT2:0.591915014259;MAFB:0.573094207432;LHX3,4:0.557852396129;IRF7:0.553789357351;FOXL1:0.530704564721;HLF:0.530167044679;PPARG:0.528281257411;IRF1,2:0.528112305289;NHLH1,2:0.516914854813;CEBPA,B_DDIT3:0.513496089148;TLX1..3_NFIC{dimer}:0.495520690186;BPTF:0.482235573961;DMAP1_NCOR{1,2}_SMARC:0.450714184057;PRDM1:0.433486861174;SP1:0.425795928342;MTE{core}:0.425415387385;NKX2-2,8:0.409873389188;TFAP2{A,C}:0.386786404727;CDC5L:0.377585452822;VSX1,2:0.37336774332;MED-1{core}:0.364750648534;ARID5B:0.361915142762;TEAD1:0.358290196339;FOX{D1,D2}:0.354561589382;FOXQ1:0.347286482938;STAT5{A,B}:0.345598166056;MAZ:0.342561681152;UFEwm:0.318248813782;HIC1:0.31119312307;HOXA9_MEIS1:0.300897693183;NKX3-2:0.300683469256;PATZ1:0.286186686778;FOS_FOS{B,L1}_JUN{B,D}:0.260623645744;TEF:0.247043601498;HSF1,2:0.244842825724;ATF5_CREB3:0.241212558275;TOPORS:0.240037092512;BACH2:0.235391185001;POU2F1..3:0.231616078412;CDX1,2,4:0.228121832722;NRF1:0.224989766713;EGR1..3:0.218594957516;FOSL2:0.216116814315;EP300:0.212676870306;FOXO1,3,4:0.19436610153;FOX{F1,F2,J1}:0.189193138388;POU5F1:0.189144548473;ELF1,2,4:0.181562901522;NFKB1_REL_RELA:0.177161613161;NFE2:0.160749305805;TFAP2B:0.158488168781;ZBTB6:0.157013734554;NFATC1..3:0.156735512945;HES1:0.149339162284;GZF1:0.148716619547;FOX{I1,J2}:0.143431244972;PAX8:0.133005353382;ATF4:0.131807304446;AR:0.12898649159;NKX6-1,2:0.117504439534;FOXN1:0.112664056322;CRX:0.107467353888;MYFfamily:0.105386276487;MYBL2:0.103848862052;SRF:0.0731929722078;SOX17:0.0715044083848;MZF1:0.0642575215622;MTF1:0.0617955964998;STAT2,4,6:0.0607084150174;SOX{8,9,10}:0.0575665367547;POU3F1..4:0.0563681521808;ZNF238:0.0537043016163;SPZ1:0.0501740945517;TBP:0.0233958957656;GFI1B:0.0218200960807;RREB1:0.0125855251191;NR6A1:0.00107842376824;ZNF143:-0.00617871555207;BREu{core}:-0.00648762674336;FOXD3:-0.0145189312237;HOX{A5,B5}:-0.0295855119173;ADNP_IRX_SIX_ZHX:-0.0408518919235;NFE2L2:-0.0411310125143;HNF1A:-0.0414941969194;LEF1_TCF7_TCF7L1,2:-0.0838493606291;GATA6:-0.0900804642917;HMGA1,2:-0.10256266581;SOX2:-0.127275291426;REST:-0.128086779768;YY1:-0.135429882743;GTF2I:-0.136020760658;T:-0.138531162542;ETS1,2:-0.141996604548;SREBF1,2:-0.15634681561;RUNX1..3:-0.177558905687;XCPE1{core}:-0.186085023913;POU6F1:-0.199674641605;TLX2:-0.21355128983;NFY{A,B,C}:-0.217179793207;SPI1:-0.217286905383;CUX2:-0.221243142353;TP53:-0.223704589261;EBF1:-0.240593608529;RORA:-0.257403166936;ZNF384:-0.260994486022;XBP1:-0.264149719458;PAX2:-0.273801935005;MYOD1:-0.301682040218;NFIL3:-0.310422291977;RFX1:-0.32232530197;MEF2{A,B,C,D}:-0.340668831396;NR3C1:-0.363128642129;GLI1..3:-0.369586134901;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.400900675153;NR1H4:-0.40105293741;HMX1:-0.402094987907;KLF4:-0.403376867232;PRRX1,2:-0.416418081206;ZEB1:-0.421960263667;SOX5:-0.425870023794;IKZF2:-0.431402626759;SPIB:-0.436722408054;TAL1_TCF{3,4,12}:-0.437856177768;HNF4A_NR2F1,2:-0.440206352804;PAX3,7:-0.443308148631;ALX4:-0.456935073598;GFI1:-0.466957641073;SMAD1..7,9:-0.471271403296;ATF2:-0.474546699606;STAT1,3:-0.47788339954;MYB:-0.481245864941;PDX1:-0.490400078027;NFE2L1:-0.490968333325;PAX6:-0.497600212616;RFX2..5_RFXANK_RFXAP:-0.501275008416;IKZF1:-0.50342528897;PBX1:-0.506214408286;E2F1..5:-0.509007444339;TFCP2:-0.509063049014;ZIC1..3:-0.525457555456;TGIF1:-0.537003491657;TFAP4:-0.544708019315;HAND1,2:-0.546572523293;ZNF423:-0.5547825524;ZNF148:-0.605820035703;FOXP3:-0.611596661929;RBPJ:-0.644405558695;RXRA_VDR{dimer}:-0.64631634962;OCT4_SOX2{dimer}:-0.685769628172;FOXM1:-0.692419847695;CREB1:-0.742115698239;NANOG{mouse}:-0.769590869622;LMO2:-0.774055313491;JUN:-0.777430631825;NKX2-3_NKX2-5:-0.844197836068;SNAI1..3:-0.846652397775;GATA4:-0.86975073851;GCM1,2:-0.935541808184;ESR1:-1.01197590083;PAX1,9:-1.06965912743;HOX{A6,A7,B6,B7}:-1.1322636278;NANOG:-1.15740364088;ESRRA:-1.1955859622;NR5A1,2:-1.79244209627;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.99476241037
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10428-106D5;search_select_hide=table117:FF:10428-106D5
 }}

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FF:10428-106D5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:01, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0