FF:10026-101D8: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005861 | ||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005861 | |||
|HumanCAGEScanFiles=NCig10016;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/testis%252c%2520adult%252c%2520pool1.NCig10016.10026-101D8.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/testis%252c%2520adult%252c%2520pool1.NCig10016.10026-101D8.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/testis%252c%2520adult%252c%2520pool1.NCig10016.10026-101D8.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/testis%252c%2520adult%252c%2520pool1.NCig10016.10026-101D8.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008739;DRR009611;DRZ001036;DRZ002421;DRZ012386;DRZ013771 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057114;DRR062873;DRZ007949 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000473,UBERON:0000991,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010026 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:5111723..5111807,+!p2@RBAK!2.43!266.59!RBAK;;chr12:107078493..107078533,+!p3@RFX4!2.22!166.64!RFX4;;chr6:134273321..134273418,+!p4@TBPL1!2.09!122.00!TBPL1;;chr17:56565736..56565779,-!p1@HSF5!1.93!84.87!HSF5;;chr17:7197844..7197869,-!p2@YBX2!1.92!81.54!YBX2;;chr12:10875733..10875752,-!p8@CSDA!1.89!76.69!CSDA;;chr1:40105299..40105326,-!p1@HEYL!1.82!64.72!HEYL;;chr12:10875768..10875808,-!p3@CSDA!1.80!93.59!CSDA;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.79!60.32!PEG3;;chr1:166958504..166958525,+!p1@MAEL!1.78!59.79!MAEL;;chr19:39390292..39390315,+!p6@NFKBIB!1.77!57.82!NFKBIB;;chr4:57547454..57547469,-!p1@HOPX!1.77!57.36!HOPX;;chr10:35464513..35464548,+!p14@CREM!1.75!55.39!CREM;;chr17:7197881..7197901,-!p3@YBX2!1.73!52.29!YBX2;;chr19:39390320..39390346,+!p5@NFKBIB!1.67!45.24!NFKBIB;;chr14:89060749..89060783,+!p6@ZC3H14!1.63!41.83!ZC3H14;;chr1:53925516..53925575,+!p1@DMRTB1!1.63!41.75!DMRTB1;;chr19:50542543..50542548,+!p2@ZNF473!1.60!38.80!ZNF473;;chr3:107364769..107364793,+!p12@BBX!1.59!38.12!BBX;;chr3:22414095..22414138,-!p7@ZNF385D!1.53!32.81!ZNF385D;;chrX:131547625..131547644,-!p4@MBNL3!1.52!32.28!MBNL3;;chr8:11561684..11561751,+!p1@GATA4!1.52!32.21!GATA4;;chr20:62680984..62680999,-!p1@SOX18!1.51!40.77!SOX18;;chr4:4291780..4291807,-!p4@LYAR!1.51!31.60!LYAR;;chr6:134273300..134273320,+!p7@TBPL1!1.51!31.30!TBPL1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.50!65.17!SOHLH2;;chr14:23762777..23762821,-!p3@HOMEZ!1.49!29.93!HOMEZ;;chr6:134210243..134210257,+!p1@TCF21!1.49!29.71!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.45!26.98!HIF3A;;chr1:202776392..202776436,-!p4@KDM5B!1.42!25.16!KDM5B;;chr19:6110555..6110617,-!p2@RFX2!1.41!81.08!RFX2;;chr1:53925063..53925076,+!p2@DMRTB1!1.40!24.02!DMRTB1;;chr11:47400078..47400106,-!p1@SPI1!1.40!23.95!SPI1;;chr11:32452357..32452363,-!p5@WT1!1.40!23.87!WT1;;chr1:170632285..170632309,+!p1@PRRX1!1.38!25.84!PRRX1;;chr12:46246608..46246632,+!p13@ARID2!1.38!23.26!ARID2;;chr13:73629107..73629148,+!p8@KLF5!1.38!23.11!KLF5;;chr8:99956662..99956684,+!p1@OSR2!1.37!34.63!OSR2;;chrX:84498989..84499003,+!p1@ZNF711!1.37!30.16!ZNF711;;chr11:32457075..32457095,-!p1@WT1!1.37!22.58!WT1;;chr5:118965244..118965287,+!p1@FAM170A!1.37!22.51!FAM170A;;chr17:7197911..7197964,-!p1@YBX2!1.36!22.05!YBX2;;chr15:101084446..101084488,-!p3@CERS3!1.35!21.37!CERS3;;chr1:197886461..197886558,+!p1@LHX9!1.35!21.29!LHX9;;chr1:26700984..26701002,-!p3@ZNF683!1.35!21.29!ZNF683;;chrX:25034067..25034088,-!p1@ARX!1.34!20.76!ARX;;chr16:31085961..31086009,+!p2@ZNF646!1.33!26.83!ZNF646;;chr5:157079374..157079395,-!p1@SOX30!1.33!20.23!SOX30;;chr19:44764031..44764072,+!p1@ZNF233!1.32!24.40!ZNF233;;chr1:166958538..166958552,+!p2@MAEL!1.32!20.01!MAEL;;chr9:841691..841702,+!p1@DMRT1!1.32!19.93!DMRT1;;chr2:68592406..68592424,+!p1@PLEK!1.31!19.25!PLEK;;chr20:51588873..51588953,+!p1@TSHZ2!1.30!24.93!TSHZ2;;chr10:60144911..60144939,+!p2@TFAM!1.30!19.17!TFAM;;chr19:42349092..42349121,+!p1@DMRTC2!1.29!18.72!DMRTC2;;chrX:30327504..30327509,-!p1@NR0B1!1.28!18.26!NR0B1;;chr8:55370487..55370503,+!p1@SOX17!1.28!18.19!SOX17;;chrY:21906594..21906622,-!p1@KDM5D!1.28!18.11!KDM5D;;chr20:61051039..61051057,-!p1@GATA5!1.28!18.04!GATA5;;chr12:10875658..10875708,-!p2@CSDA!1.27!40.01!CSDA;;chr1:43148029..43148040,+!p7@YBX1!1.26!21.29!YBX1;;chr21:39870339..39870443,-!p1@ERG!1.26!17.05!ERG;;chr4:174451370..174451387,-!p1@HAND2!1.26!17.05!HAND2;;chr19:36132631..36132653,+!p3@ETV2!1.25!16.60!ETV2;;chr11:113930425..113930471,+!p1@ZBTB16!1.24!23.79!ZBTB16;;chr8:23540441..23540466,-!p1@NKX3-1!1.23!31.75!NKX3-1;;chr1:151804244..151804310,-!p1@RORC!1.23!16.07!RORC;;chr17:70117153..70117174,+!p1@SOX9!1.22!158.15!SOX9;;chr10:35456485..35456498,+!p22@CREM!1.22!15.46!CREM;;chr1:114301755..114301796,-!p3@PHTF1!1.19!16.29!PHTF1;;chr3:141144963..141144984,+!p44@ZBTB38!1.19!14.40!ZBTB38;;chr17:15983824..15983838,-!p6@NCOR1!1.18!14.17!NCOR1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.18!14.09!HOXC5;;chr13:45009414..45009442,-!p10@TSC22D1!1.17!13.94!TSC22D1;;chr1:166958364..166958375,+!p3@MAEL!1.17!13.87!MAEL;;chr8:116504458..116504481,-!p24@TRPS1!1.17!13.72!TRPS1;;chr1:214161272..214161322,+!p1@PROX1!1.16!18.79!PROX1;;chr3:114070550..114070569,-!p28@ZBTB20!1.16!13.49!ZBTB20;;chr12:23737512..23737527,-!p8@SOX5!1.15!13.19!SOX5;;chr1:8939229..8939249,-!p21@ENO1!1.15!13.11!ENO1;;chr8:145535378..145535420,+!p4@HSF1!1.14!16.07!HSF1;;chr20:39928705..39928740,-!p11@ZHX3!1.13!12.35!ZHX3;;chr7:44143925..44143970,+!p1@AEBP1!1.12!272.58!AEBP1;;chr16:79634624..79634642,-!p1@MAF!1.12!47.74!MAF;;chr7:73038839..73038862,-!p1@MLXIPL!1.12!12.20!MLXIPL;;chr6:19837592..19837621,+!p1@ID4!1.11!73.05!ID4;;chr3:114070572..114070597,-!p24@ZBTB20!1.11!11.97!ZBTB20;;chr7:63505799..63505904,+!p1@ZNF727!1.11!11.75!ZNF727;;chrX:66763856..66763896,+!p1@AR!1.10!16.90!AR;;chr1:211432593..211432642,+!p6@RCOR3!1.10!16.67!RCOR3;;chr14:37051798..37051831,-!p1@NKX2-8!1.10!11.59!NKX2-8;;chr15:96873984..96873999,+!p3@NR2F2!1.09!84.04!NR2F2;;chr19:40503013..40503044,+!p3@ZNF546!1.09!12.81!ZNF546;;chrX:79270245..79270257,+!p1@TBX22!1.09!11.44!TBX22;;chr9:127269661..127269719,-!p1@NR5A1!1.09!11.29!NR5A1;;chr16:79634464..79634493,-!p5@MAF!1.09!11.29!MAF;;chr10:119302232..119302265,+!p1@EMX2!1.09!11.22!EMX2;;chr2:176994408..176994492,+!p1@HOXD8!1.09!11.22!HOXD8;;chrX:131545395..131545413,-!p16@MBNL3!1.09!11.22!MBNL3;;chr6:170871224..170871263,+!p4@TBP!1.09!11.22!TBP;;chr11:65686689..65686700,+!p14@DRAP1!1.08!10.91!DRAP1;;chr6:134273279..134273294,+!p10@TBPL1!1.07!10.84!TBPL1;;chr1:247094628..247094663,-!p5@AHCTF1!1.07!10.84!AHCTF1;;chr19:39390274..39390285,+!p11@NFKBIB!1.07!10.76!NFKBIB;;chr4:26322996..26323031,+!p21@RBPJ!1.07!10.76!RBPJ;;chr15:83952197..83952219,-!p6@BNC1!1.07!10.68!BNC1;;chr9:2015215..2015222,+!p35@SMARCA2!1.06!10.61!SMARCA2;;chr6:170863672..170863698,+!p6@TBP!1.06!10.53!TBP;;chr14:89060786..89060796,+!p11@ZC3H14!1.06!10.53!ZC3H14;;chr1:247313250..247313291,-!p2@ZNF124!1.06!10.46!ZNF124;;chr20:56100179..56100208,-!p1@CTCFL!1.06!10.38!CTCFL;;chr2:27371879..27371907,+!p1@TCF23!1.06!10.38!TCF23;;chrX:131547596..131547609,-!p10@MBNL3!1.05!10.15!MBNL3;;chr22:22863052..22863133,-!p1@ZNF280B!1.04!26.67!ZNF280B;;chrX:103499602..103499617,-!p1@ESX1!1.04!10.00!ESX1;;chr1:202776145..202776171,-!p10@KDM5B!1.04!10.00!KDM5B;;chr19:48076356..48076387,-!p@chr19:48076356..48076387,-!1.04!9.85!ZNF541;;chr9:114287433..114287513,+!p1@ZNF483!1.03!25.69!ZNF483;;chr17:53342311..53342400,+!p1@HLF!1.03!11.06!HLF;;chr5:322733..322758,+!p2@AHRR!1.03!9.70!AHRR;;chr10:135043702..135043729,+!p1@UTF1!1.03!9.62!UTF1;;chr16:79633894..79633954,-!p3@MAF!1.02!18.64!MAF;;chr7:15726243..15726293,-!p2@MEOX2!1.02!9.55!MEOX2;;chr14:89060797..89060808,+!p12@ZC3H14!1.02!9.47!ZC3H14;;chrX:131545273..131545287,-!p17@MBNL3!1.02!9.40!MBNL3;;chr11:130184470..130184533,-!p2@ZBTB44!1.01!25.61!ZBTB44;;chr14:89029323..89029329,+!p4@ZC3H14!1.01!11.75!ZC3H14;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.44!KLF15;;chr11:65686702..65686715,+!p11@DRAP1!1.01!10.38!DRAP1;;chr7:15726296..15726315,-!p1@MEOX2!1.01!9.32!MEOX2;;chr13:45150896..45150927,-!p17@TSC22D1!1.01!9.17!TSC22D1;;chr14:89029308..89029318,+!p3@ZC3H14!1.00!15.31!ZC3H14;;chr4:4291751..4291760,-!p12@LYAR!1.00!9.09!LYAR;;chr19:50529307..50529323,+!p3@ZNF473!1.00!9.09!ZNF473;;chr2:19558373..19558392,-!p1@OSR1!0.99!24.78!OSR1;;chr16:79634595..79634620,-!p2@MAF!0.99!16.29!MAF;;chr1:43147867..43147894,+!p10@YBX1!0.99!8.79!YBX1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.99!8.71!ZNF676;;chr5:322711..322730,+!p6@AHRR!0.98!8.56!AHRR;;chr5:121465234..121465263,+!p1@ZNF474!0.97!8.41!ZNF474;;chr2:114036488..114036504,-!p1@PAX8!0.97!8.41!PAX8;;chr22:19748231..19748317,+!p1@TBX1!0.97!8.34!TBX1;;chr12:23737534..23737550,-!p11@SOX5!0.97!8.34!SOX5;;chr5:79615816..79615827,+!p1@SPZ1!0.97!8.26!SPZ1;;chr22:41763452..41763466,+!p2@TEF!0.96!8.18!TEF;;chr2:208423840..208423851,+!p10@CREB1!0.96!8.18!CREB1;;chr6:170863699..170863716,+!p8@TBP!0.96!8.11!TBP;;chr17:74137321..74137337,-!p1@FOXJ1!0.96!8.03!FOXJ1;;chr22:22863031..22863050,-!p2@ZNF280B!0.95!7.96!ZNF280B;;chr8:25902876..25902936,-!p1@EBF2!0.95!7.88!EBF2;;chr19:53636125..53636178,-!p1@ZNF415!0.94!22.66!ZNF415;;chr7:44143978..44143989,+!p2@AEBP1!0.94!14.47!AEBP1;;chr11:113930291..113930339,+!p2@ZBTB16!0.94!12.88!ZBTB16;;chr10:21822984..21823023,+!p5@MLLT10!0.94!9.93!MLLT10;;chr12:52437488..52437507,+!p2@NR4A1!0.94!7.81!NR4A1;;chr9:109694916..109694927,+!p13@ZNF462!0.94!7.81!ZNF462;;chr1:26701003..26701014,-!p4@ZNF683!0.94!7.81!ZNF683;;chr9:130954135..130954168,-!p13@CIZ1!0.94!7.73!CIZ1;;chr1:8939265..8939367,-!p5@ENO1!0.93!15.91!ENO1;;chr18:53068911..53068935,-!p4@TCF4!0.93!8.49!TCF4;;chr19:53758167..53758190,-!p3@ZNF677!0.93!7.58!ZNF677;;chr19:38308356..38308378,-!p4@ZNF573!0.93!7.50!ZNF573;;chr1:202736088..202736104,-!p6@KDM5B!0.93!7.43!KDM5B;;chr16:66835480..66835492,-!p1@ENST00000559050!0.93!7.43!CCDC79;;chr18:45935720..45935772,-!p1@ZBTB7C!0.93!7.43!ZBTB7C;;chr1:61548069..61548102,+!p3@NFIA!0.92!18.34!NFIA;;chr2:145277882..145277967,-!p3@ZEB2!0.92!12.81!ZEB2;;chr14:64804818..64804842,-!p3@ESR2!0.92!7.27!ESR2;;chr18:19749386..19749404,+!p2@GATA6!0.91!10.31!GATA6;;chr1:209979467..209979494,-!p1@IRF6!0.91!8.11!IRF6;;chr17:17726892..17726903,-!p6@SREBF1!0.91!8.03!SREBF1;;chr19:16435705..16435726,+!p3@KLF2!0.91!7.20!KLF2;;chr7:148580563..148580580,-!p6@EZH2!0.91!7.20!EZH2;;chr6:28048968..28048983,+!p3@ZNF165!0.91!7.12!ZNF165;;chrX:128657457..128657475,-!p1@SMARCA1!0.90!83.51!SMARCA1;;chr10:35415761..35415800,+!p7@CREM!0.90!18.26!CREM;;chr1:170633348..170633399,+!p2@PRRX1!0.90!9.70!PRRX1;;chr14:24025106..24025172,-!p2@ZFHX2!0.90!9.25!ZFHX2;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.11!PRRX1;;chr2:208423853..208423865,+!p12@CREB1!0.90!6.97!CREB1;;chr5:157079401..157079413,-!p3@SOX30!0.90!6.97!SOX30;;chr5:132236801..132236846,-!p25@AFF4!0.90!6.90!AFF4;;chr12:52445218..52445237,+!p1@NR4A1!0.89!90.56!NR4A1;;chr15:96874012..96874042,+!p2@NR2F2!0.89!63.96!NR2F2;;chr11:6555489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| |expression_enrichment_score=chr7:5111723..5111807,+!p2@RBAK!2.43!266.59!RBAK;;chr12:107078493..107078533,+!p3@RFX4!2.22!166.64!RFX4;;chr6:134273321..134273418,+!p4@TBPL1!2.09!122.00!TBPL1;;chr17:56565736..56565779,-!p1@HSF5!1.93!84.87!HSF5;;chr17:7197844..7197869,-!p2@YBX2!1.92!81.54!YBX2;;chr12:10875733..10875752,-!p8@CSDA!1.89!76.69!CSDA;;chr1:40105299..40105326,-!p1@HEYL!1.82!64.72!HEYL;;chr12:10875768..10875808,-!p3@CSDA!1.80!93.59!CSDA;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.79!60.32!PEG3;;chr1:166958504..166958525,+!p1@MAEL!1.78!59.79!MAEL;;chr19:39390292..39390315,+!p6@NFKBIB!1.77!57.82!NFKBIB;;chr4:57547454..57547469,-!p1@HOPX!1.77!57.36!HOPX;;chr10:35464513..35464548,+!p14@CREM!1.75!55.39!CREM;;chr17:7197881..7197901,-!p3@YBX2!1.73!52.29!YBX2;;chr19:39390320..39390346,+!p5@NFKBIB!1.67!45.24!NFKBIB;;chr14:89060749..89060783,+!p6@ZC3H14!1.63!41.83!ZC3H14;;chr1:53925516..53925575,+!p1@DMRTB1!1.63!41.75!DMRTB1;;chr19:50542543..50542548,+!p2@ZNF473!1.60!38.80!ZNF473;;chr3:107364769..107364793,+!p12@BBX!1.59!38.12!BBX;;chr3:22414095..22414138,-!p7@ZNF385D!1.53!32.81!ZNF385D;;chrX:131547625..131547644,-!p4@MBNL3!1.52!32.28!MBNL3;;chr8:11561684..11561751,+!p1@GATA4!1.52!32.21!GATA4;;chr20:62680984..62680999,-!p1@SOX18!1.51!40.77!SOX18;;chr4:4291780..4291807,-!p4@LYAR!1.51!31.60!LYAR;;chr6:134273300..134273320,+!p7@TBPL1!1.51!31.30!TBPL1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.50!65.17!SOHLH2;;chr14:23762777..23762821,-!p3@HOMEZ!1.49!29.93!HOMEZ;;chr6:134210243..134210257,+!p1@TCF21!1.49!29.71!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.45!26.98!HIF3A;;chr1:202776392..202776436,-!p4@KDM5B!1.42!25.16!KDM5B;;chr19:6110555..6110617,-!p2@RFX2!1.41!81.08!RFX2;;chr1:53925063..53925076,+!p2@DMRTB1!1.40!24.02!DMRTB1;;chr11:47400078..47400106,-!p1@SPI1!1.40!23.95!SPI1;;chr11:32452357..32452363,-!p5@WT1!1.40!23.87!WT1;;chr1:170632285..170632309,+!p1@PRRX1!1.38!25.84!PRRX1;;chr12:46246608..46246632,+!p13@ARID2!1.38!23.26!ARID2;;chr13:73629107..73629148,+!p8@KLF5!1.38!23.11!KLF5;;chr8:99956662..99956684,+!p1@OSR2!1.37!34.63!OSR2;;chrX:84498989..84499003,+!p1@ZNF711!1.37!30.16!ZNF711;;chr11:32457075..32457095,-!p1@WT1!1.37!22.58!WT1;;chr5:118965244..118965287,+!p1@FAM170A!1.37!22.51!FAM170A;;chr17:7197911..7197964,-!p1@YBX2!1.36!22.05!YBX2;;chr15:101084446..101084488,-!p3@CERS3!1.35!21.37!CERS3;;chr1:197886461..197886558,+!p1@LHX9!1.35!21.29!LHX9;;chr1:26700984..26701002,-!p3@ZNF683!1.35!21.29!ZNF683;;chrX:25034067..25034088,-!p1@ARX!1.34!20.76!ARX;;chr16:31085961..31086009,+!p2@ZNF646!1.33!26.83!ZNF646;;chr5:157079374..157079395,-!p1@SOX30!1.33!20.23!SOX30;;chr19:44764031..44764072,+!p1@ZNF233!1.32!24.40!ZNF233;;chr1:166958538..166958552,+!p2@MAEL!1.32!20.01!MAEL;;chr9:841691..841702,+!p1@DMRT1!1.32!19.93!DMRT1;;chr2:68592406..68592424,+!p1@PLEK!1.31!19.25!PLEK;;chr20:51588873..51588953,+!p1@TSHZ2!1.30!24.93!TSHZ2;;chr10:60144911..60144939,+!p2@TFAM!1.30!19.17!TFAM;;chr19:42349092..42349121,+!p1@DMRTC2!1.29!18.72!DMRTC2;;chrX:30327504..30327509,-!p1@NR0B1!1.28!18.26!NR0B1;;chr8:55370487..55370503,+!p1@SOX17!1.28!18.19!SOX17;;chrY:21906594..21906622,-!p1@KDM5D!1.28!18.11!KDM5D;;chr20:61051039..61051057,-!p1@GATA5!1.28!18.04!GATA5;;chr12:10875658..10875708,-!p2@CSDA!1.27!40.01!CSDA;;chr1:43148029..43148040,+!p7@YBX1!1.26!21.29!YBX1;;chr21:39870339..39870443,-!p1@ERG!1.26!17.05!ERG;;chr4:174451370..174451387,-!p1@HAND2!1.26!17.05!HAND2;;chr19:36132631..36132653,+!p3@ETV2!1.25!16.60!ETV2;;chr11:113930425..113930471,+!p1@ZBTB16!1.24!23.79!ZBTB16;;chr8:23540441..23540466,-!p1@NKX3-1!1.23!31.75!NKX3-1;;chr1:151804244..151804310,-!p1@RORC!1.23!16.07!RORC;;chr17:70117153..70117174,+!p1@SOX9!1.22!158.15!SOX9;;chr10:35456485..35456498,+!p22@CREM!1.22!15.46!CREM;;chr1:114301755..114301796,-!p3@PHTF1!1.19!16.29!PHTF1;;chr3:141144963..141144984,+!p44@ZBTB38!1.19!14.40!ZBTB38;;chr17:15983824..15983838,-!p6@NCOR1!1.18!14.17!NCOR1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.18!14.09!HOXC5;;chr13:45009414..45009442,-!p10@TSC22D1!1.17!13.94!TSC22D1;;chr1:166958364..166958375,+!p3@MAEL!1.17!13.87!MAEL;;chr8:116504458..116504481,-!p24@TRPS1!1.17!13.72!TRPS1;;chr1:214161272..214161322,+!p1@PROX1!1.16!18.79!PROX1;;chr3:114070550..114070569,-!p28@ZBTB20!1.16!13.49!ZBTB20;;chr12:23737512..23737527,-!p8@SOX5!1.15!13.19!SOX5;;chr1:8939229..8939249,-!p21@ENO1!1.15!13.11!ENO1;;chr8:145535378..145535420,+!p4@HSF1!1.14!16.07!HSF1;;chr20:39928705..39928740,-!p11@ZHX3!1.13!12.35!ZHX3;;chr7:44143925..44143970,+!p1@AEBP1!1.12!272.58!AEBP1;;chr16:79634624..79634642,-!p1@MAF!1.12!47.74!MAF;;chr7:73038839..73038862,-!p1@MLXIPL!1.12!12.20!MLXIPL;;chr6:19837592..19837621,+!p1@ID4!1.11!73.05!ID4;;chr3:114070572..114070597,-!p24@ZBTB20!1.11!11.97!ZBTB20;;chr7:63505799..63505904,+!p1@ZNF727!1.11!11.75!ZNF727;;chrX:66763856..66763896,+!p1@AR!1.10!16.90!AR;;chr1:211432593..211432642,+!p6@RCOR3!1.10!16.67!RCOR3;;chr14:37051798..37051831,-!p1@NKX2-8!1.10!11.59!NKX2-8;;chr15:96873984..96873999,+!p3@NR2F2!1.09!84.04!NR2F2;;chr19:40503013..40503044,+!p3@ZNF546!1.09!12.81!ZNF546;;chrX:79270245..79270257,+!p1@TBX22!1.09!11.44!TBX22;;chr9:127269661..127269719,-!p1@NR5A1!1.09!11.29!NR5A1;;chr16:79634464..79634493,-!p5@MAF!1.09!11.29!MAF;;chr10:119302232..119302265,+!p1@EMX2!1.09!11.22!EMX2;;chr2:176994408..176994492,+!p1@HOXD8!1.09!11.22!HOXD8;;chrX:131545395..131545413,-!p16@MBNL3!1.09!11.22!MBNL3;;chr6:170871224..170871263,+!p4@TBP!1.09!11.22!TBP;;chr11:65686689..65686700,+!p14@DRAP1!1.08!10.91!DRAP1;;chr6:134273279..134273294,+!p10@TBPL1!1.07!10.84!TBPL1;;chr1:247094628..247094663,-!p5@AHCTF1!1.07!10.84!AHCTF1;;chr19:39390274..39390285,+!p11@NFKBIB!1.07!10.76!NFKBIB;;chr4:26322996..26323031,+!p21@RBPJ!1.07!10.76!RBPJ;;chr15:83952197..83952219,-!p6@BNC1!1.07!10.68!BNC1;;chr9:2015215..2015222,+!p35@SMARCA2!1.06!10.61!SMARCA2;;chr6:170863672..170863698,+!p6@TBP!1.06!10.53!TBP;;chr14:89060786..89060796,+!p11@ZC3H14!1.06!10.53!ZC3H14;;chr1:247313250..247313291,-!p2@ZNF124!1.06!10.46!ZNF124;;chr20:56100179..56100208,-!p1@CTCFL!1.06!10.38!CTCFL;;chr2:27371879..27371907,+!p1@TCF23!1.06!10.38!TCF23;;chrX:131547596..131547609,-!p10@MBNL3!1.05!10.15!MBNL3;;chr22:22863052..22863133,-!p1@ZNF280B!1.04!26.67!ZNF280B;;chrX:103499602..103499617,-!p1@ESX1!1.04!10.00!ESX1;;chr1:202776145..202776171,-!p10@KDM5B!1.04!10.00!KDM5B;;chr19:48076356..48076387,-!p@chr19:48076356..48076387,-!1.04!9.85!ZNF541;;chr9:114287433..114287513,+!p1@ZNF483!1.03!25.69!ZNF483;;chr17:53342311..53342400,+!p1@HLF!1.03!11.06!HLF;;chr5:322733..322758,+!p2@AHRR!1.03!9.70!AHRR;;chr10:135043702..135043729,+!p1@UTF1!1.03!9.62!UTF1;;chr16:79633894..79633954,-!p3@MAF!1.02!18.64!MAF;;chr7:15726243..15726293,-!p2@MEOX2!1.02!9.55!MEOX2;;chr14:89060797..89060808,+!p12@ZC3H14!1.02!9.47!ZC3H14;;chrX:131545273..131545287,-!p17@MBNL3!1.02!9.40!MBNL3;;chr11:130184470..130184533,-!p2@ZBTB44!1.01!25.61!ZBTB44;;chr14:89029323..89029329,+!p4@ZC3H14!1.01!11.75!ZC3H14;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.44!KLF15;;chr11:65686702..65686715,+!p11@DRAP1!1.01!10.38!DRAP1;;chr7:15726296..15726315,-!p1@MEOX2!1.01!9.32!MEOX2;;chr13:45150896..45150927,-!p17@TSC22D1!1.01!9.17!TSC22D1;;chr14:89029308..89029318,+!p3@ZC3H14!1.00!15.31!ZC3H14;;chr4:4291751..4291760,-!p12@LYAR!1.00!9.09!LYAR;;chr19:50529307..50529323,+!p3@ZNF473!1.00!9.09!ZNF473;;chr2:19558373..19558392,-!p1@OSR1!0.99!24.78!OSR1;;chr16:79634595..79634620,-!p2@MAF!0.99!16.29!MAF;;chr1:43147867..43147894,+!p10@YBX1!0.99!8.79!YBX1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.99!8.71!ZNF676;;chr5:322711..322730,+!p6@AHRR!0.98!8.56!AHRR;;chr5:121465234..121465263,+!p1@ZNF474!0.97!8.41!ZNF474;;chr2:114036488..114036504,-!p1@PAX8!0.97!8.41!PAX8;;chr22:19748231..19748317,+!p1@TBX1!0.97!8.34!TBX1;;chr12:23737534..23737550,-!p11@SOX5!0.97!8.34!SOX5;;chr5:79615816..79615827,+!p1@SPZ1!0.97!8.26!SPZ1;;chr22:41763452..41763466,+!p2@TEF!0.96!8.18!TEF;;chr2:208423840..208423851,+!p10@CREB1!0.96!8.18!CREB1;;chr6:170863699..170863716,+!p8@TBP!0.96!8.11!TBP;;chr17:74137321..74137337,-!p1@FOXJ1!0.96!8.03!FOXJ1;;chr22:22863031..22863050,-!p2@ZNF280B!0.95!7.96!ZNF280B;;chr8:25902876..25902936,-!p1@EBF2!0.95!7.88!EBF2;;chr19:53636125..53636178,-!p1@ZNF415!0.94!22.66!ZNF415;;chr7:44143978..44143989,+!p2@AEBP1!0.94!14.47!AEBP1;;chr11:113930291..113930339,+!p2@ZBTB16!0.94!12.88!ZBTB16;;chr10:21822984..21823023,+!p5@MLLT10!0.94!9.93!MLLT10;;chr12:52437488..52437507,+!p2@NR4A1!0.94!7.81!NR4A1;;chr9:109694916..109694927,+!p13@ZNF462!0.94!7.81!ZNF462;;chr1:26701003..26701014,-!p4@ZNF683!0.94!7.81!ZNF683;;chr9:130954135..130954168,-!p13@CIZ1!0.94!7.73!CIZ1;;chr1:8939265..8939367,-!p5@ENO1!0.93!15.91!ENO1;;chr18:53068911..53068935,-!p4@TCF4!0.93!8.49!TCF4;;chr19:53758167..53758190,-!p3@ZNF677!0.93!7.58!ZNF677;;chr19:38308356..38308378,-!p4@ZNF573!0.93!7.50!ZNF573;;chr1:202736088..202736104,-!p6@KDM5B!0.93!7.43!KDM5B;;chr16:66835480..66835492,-!p1@ENST00000559050!0.93!7.43!CCDC79;;chr18:45935720..45935772,-!p1@ZBTB7C!0.93!7.43!ZBTB7C;;chr1:61548069..61548102,+!p3@NFIA!0.92!18.34!NFIA;;chr2:145277882..145277967,-!p3@ZEB2!0.92!12.81!ZEB2;;chr14:64804818..64804842,-!p3@ESR2!0.92!7.27!ESR2;;chr18:19749386..19749404,+!p2@GATA6!0.91!10.31!GATA6;;chr1:209979467..209979494,-!p1@IRF6!0.91!8.11!IRF6;;chr17:17726892..17726903,-!p6@SREBF1!0.91!8.03!SREBF1;;chr19:16435705..16435726,+!p3@KLF2!0.91!7.20!KLF2;;chr7:148580563..148580580,-!p6@EZH2!0.91!7.20!EZH2;;chr6:28048968..28048983,+!p3@ZNF165!0.91!7.12!ZNF165;;chrX:128657457..128657475,-!p1@SMARCA1!0.90!83.51!SMARCA1;;chr10:35415761..35415800,+!p7@CREM!0.90!18.26!CREM;;chr1:170633348..170633399,+!p2@PRRX1!0.90!9.70!PRRX1;;chr14:24025106..24025172,-!p2@ZFHX2!0.90!9.25!ZFHX2;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.11!PRRX1;;chr2:208423853..208423865,+!p12@CREB1!0.90!6.97!CREB1;;chr5:157079401..157079413,-!p3@SOX30!0.90!6.97!SOX30;;chr5:132236801..132236846,-!p25@AFF4!0.90!6.90!AFF4;;chr12:52445218..52445237,+!p1@NR4A1!0.89!90.56!NR4A1;;chr15:96874012..96874042,+!p2@NR2F2!0.89!63.96!NR2F2;;chr11:6555489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CA4;;chr1:23694794..23694863,-!p1@ZNF436!0.44!7.96!ZNF436;;chr6:170863353..170863368,+!p2@TBP!0.44!4.17!TBP;;chr19:56904947..56904975,-!p2@ZNF582!0.44!3.49!ZNF582;;chr19:13134772..13134822,+!p2@NFIX!0.44!2.96!NFIX;;chr17:46688334..46688385,-!p1@HOXB7!0.44!2.88!HOXB7;;chr15:74833547..74833567,+!p2@ARID3B!0.44!2.80!ARID3B;;chr22:42666429..42666436,-!p@chr22:42666429..42666436,-!0.44!2.05!TCF20;;chr2:145277589..145277612,-!p12@ZEB2!0.44!1.74!ZEB2;;chr10:119301928..119301955,+!p7@EMX2!0.44!1.74!EMX2;;chr11:101000537..101000553,-!p1@PGR!0.44!1.74!PGR;;chr11:16629261..16629284,-!p1@SOX6!0.44!1.74!SOX6;;chr13:45048408..45048415,-!p80@TSC22D1!0.44!1.74!TSC22D1;;chr7:4722287..4722294,+!p9@FOXK1!0.44!1.74!FOXK1;;chr8:67874805..67874831,-!p1@TCF24!0.44!1.74!TCF24;;chr9:117138946..117138968,-!p4@AKNA!0.44!1.74!AKNA;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.43!10.68!TAL1;;chr9:125693757..125693818,-!p1@ZBTB26!0.43!10.31!ZBTB26;;chr19:44529479..44529542,+!p1@ZNF222,p1@ZNF284!0.43!10.08!ZNF222;;chr10:38265517..38265591,-!p1@ZNF25!0.43!8.79!ZNF25;;chr3:71179746..71179783,-!p7@FOXP1!0.43!7.58!FOXP1;;chr1:164528384..164528409,+!p3@PBX1!0.43!6.90!PBX1;;chr20:3388579..3388619,-!p3@C20orf194!0.43!5.08!C20orf194;;chr1:23696308..23696339,-!p2@ZNF436!0.43!4.55!ZNF436;;chr15:41913412..41913456,+!p3@MGA!0.43!4.55!MGA;;chr16:3285119..3285133,-!p2@ZNF200!0.43!4.24!ZNF200;;chr1:61547781..61547809,+!p5@NFIA!0.43!4.24!NFIA;;chr3:52001396..52001425,-!p4@PCBP4!0.43!3.64!PCBP4;;chr2:28618532..28618610,+!p4@FOSL2!0.43!3.49!FOSL2;;chr18:42260059..42260132,+!p1@SETBP1!0.43!3.33!SETBP1;;chr19:11071630..11071644,+!p4@SMARCA4!0.43!3.18!SMARCA4;;chr10:111987079..111987115,+!p3@MXI1!0.43!2.65!MXI1;;chr12:10865870..10865888,-!p6@CSDA!0.43!2.65!CSDA;;chr9:73029018..73029042,-!p6@KLF9!0.43!2.50!KLF9;;chr13:73636252..73636307,+!p2@KLF5!0.43!2.12!KLF5;;chr2:176033054..176033065,-!p4@ATF2!0.43!2.12!ATF2;;chr7:127032363..127032382,-!p6@ZNF800!0.43!1.97!ZNF800;;chr5:174151612..174151633,+!p2@MSX2!0.43!1.67!MSX2;;chr7:100065686..100065701,-!p2@TSC22D4!0.43!1.67!TSC22D4;;chr8:11534512..11534519,+!p7@GATA4!0.43!1.67!GATA4;;chr8:93115584..93115642,-!p5@RUNX1T1!0.43!1.67!RUNX1T1;;chr4:144434712..144434722,+!p9@SMARCA5!0.43!1.67!SMARCA5;;chr4:57547870..57547873,-!p11@HOPX!0.43!1.67!HOPX;;chr14:89029904..89029917,+!p5@ZC3H14!0.43!1.67!ZC3H14;;chr15:57540195..57540200,+!p48@TCF12!0.43!1.67!TCF12;;chr19:16435735..16435773,+!p4@KLF2!0.43!1.67!KLF2;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.43!1.67!MEF2B;;chr19:37407549..37407563,-!p9@ZNF829!0.43!1.67!ZNF829;;chr12:53774132..53774155,+!p34@SP1!0.43!1.67!SP1;;chr12:80084701..80084710,-!p20@PAWR!0.43!1.67!PAWR;;chr12:80085120..80085156,-!p14@PAWR!0.43!1.67!PAWR;;chr13:79177703..79177729,-!p2@POU4F1!0.43!1.67!POU4F1;;chr19:929006..929018,+!p14@ARID3A!0.43!1.67!ARID3A;;chr19:18392422..18392440,-!p1@JUND!0.42!331.61!JUND;;chr4:76439665..76439699,+!p1@THAP6!0.42!32.89!THAP6;;chr4:140098339..140098392,-!p1@ELF2!0.42!19.32!ELF2;;chrX:152599604..152599626,+!p1@ZNF275!0.42!17.73!ZNF275;;chr9:125667618..125667678,-!p2@RC3H2!0.42!10.23!RC3H2;;chr3:114343768..114343822,-!p1@ZBTB20!0.42!9.78!ZBTB20;;chrX:131623044..131623089,-!p1@MBNL3!0.42!9.40!MBNL3;;chr1:8483878..8483907,-!p4@RERE!0.42!8.64!RERE;;chr17:38498594..38498661,+!p2@RARA!0.42!7.35!RARA;;chr20:47894936..47895010,-!p2@ZNFX1!0.42!7.05!ZNFX1;;chr6:106534192..106534224,+!p1@PRDM1!0.42!6.06!PRDM1;;chr13:20357110..20357121,-!p2@PSPC1!0.42!5.68!PSPC1;;chr9:3525727..3525828,-!p2@RFX3!0.42!5.38!RFX3;;chr1:164528340..164528379,+!p4@PBX1!0.42!5.23!PBX1;;chr19:44905759..44905797,-!p2@ZFP112,p2@ZNF285!0.42!4.70!ZNF285;;chr10:43932296..43932360,+!p1@ZNF487P!0.42!4.24!ZNF487P;;chr10:64576105..64576133,-!p1@EGR2!0.42!4.17!EGR2;;chr19:37407172..37407217,-!p2@ZNF829!0.42!3.56!ZNF829;;chr19:58570605..58570655,+!p1@ZNF135!0.42!3.56!ZNF135;;chr1:16302608..16302621,-!p2@ZBTB17!0.42!3.56!ZBTB17;;chr13:37494365..37494381,-!p1@SMAD9!0.42!3.41!SMAD9;;chr8:67525524..67525543,-!p3@MYBL1!0.42!3.26!MYBL1;;chr3:168864315..168864339,-!p2@MECOM!0.42!3.18!MECOM;;chr4:103422076..103422117,+!p5@NFKB1!0.42!2.65!NFKB1;;chr5:178450829..178450853,+!p2@ZNF879!0.42!2.65!ZNF879;;chr6:106546808..106546833,+!p3@PRDM1!0.42!2.27!PRDM1;;chr19:12175573..12175584,+!p3@ZNF844!0.42!2.05!ZNF844;;chr4:4291861..4291913,-!p1@LYAR!0.41!53.05!LYAR;;chr9:94186101..94186122,-!p1@NFIL3!0.41!31.98!NFIL3;;chr1:8877692..8877732,-!p1@RERE!0.41!18.34!RERE;;chr11:46299199..46299233,+!p1@CREB3L1!0.41!11.44!CREB3L1;;chr17:4981745..4981810,+!p1@ZFP3!0.41!10.84!ZFP3;;chr19:38085633..38085706,-!p1@ZNF571!0.41!5.46!ZNF571;;chr15:74833584..74833626,+!p1@ARID3B!0.41!4.77!ARID3B;;chr12:80084862..80084884,-!p7@PAWR!0.41!4.24!PAWR;;chr4:144435112..144435176,+!p3@SMARCA5!0.41!4.09!SMARCA5;;chr20:50179368..50179392,-!p2@NFATC2!0.41!2.27!NFATC2;;chr10:22022947..22022965,+!p7@MLLT10!0.41!2.12!MLLT10;;chrX:107019163..107019179,-!p7@TSC22D3!0.41!1.97!TSC22D3;;chr22:29196433..29196445,-!p4@XBP1!0.41!1.82!XBP1;;chr2:176994919..176994931,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000473;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000991;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122 | |||
|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool1.CNhs10632.10026-101D8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool1.CNhs10632.10026-101D8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool1.CNhs10632.10026-101D8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool1.CNhs10632.10026-101D8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/testis%252c%2520adult%252c%2520pool1.CNhs10632.10026-101D8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10026-101D8 | |id=FF:10026-101D8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010026 | ||
|is_obsolete= | |||
|library_id=CNhs10632 | |||
|library_id_phase_based=2:CNhs10632 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10026 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10026 | |||
|name=testis, adult, pool1 | |name=testis, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=NCig10016,,, | |profile_cagescan=NCig10016,,, | ||
|profile_hcage=CNhs10632,LSID657,release008,COMPLETED | |profile_hcage=CNhs10632,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.0612855891386548,0,0,0,0,0,-0.0207873085209712,0,0.0846678705743537,-0.266542090352061,0,0,0,0.0317229404497622,0,0,0,0,0,0.0612855891386548,0,0,0,-0.0920374212097729,0,0,0,0.0574913374477655,0,-0.0662349558182953,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0306877948648848,0,0,0,0,0,0,0,0,0.0202667321604732,0.0317229404497622,0.0703663798363482,0,0.0317229404497622,0.0317229404497622,0.0877313485733295,0.205807621077399,-0.0969923612426051,0,0,-0.00838012066648178,0.0889635065466152,0,0.0158614702248811,0,0,0,0,0,0.139530721565415,0,0,0,0.0612855891386548,0,0.0317229404497622,0,0.0317229404497622,-0.0882538871991928,0.18073126077122,0,0,0,0,0.100281588331095,0,0.14355685976254,0,0.108236067181062,0.306073241609789,0.0216544295442025,0,0.139530721565415,0,0,-0.0367497620990516,-0.122615730576014,0.774354437348018,0,0,0.114982674895531,0,0.408514660310769,0,0,0,0,0.0158614702248811,0,0,0,0,0,0,0.0065302166162385,0,0,0,0.0706708956619347,0.0537166636614283,0.0317229404497622,0,-0.00969809206379932,0.0317229404497622,0,0.215817875731912 | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -17 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -17 | ||
| Line 56: | Line 81: | ||
|rna_tube_id=101D8 | |rna_tube_id=101D8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=RDhi10056 | |||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.38078560916956e-216!GO:0005737;cytoplasm;3.61726086121504e-152!GO:0043226;organelle;1.75993354774438e-151!GO:0043229;intracellular organelle;3.35705156242304e-151!GO:0043231;intracellular membrane-bound organelle;3.00850326949739e-142!GO:0043227;membrane-bound organelle;3.22839442516257e-142!GO:0044422;organelle part;4.25083658127343e-102!GO:0044446;intracellular organelle part;7.98588619115688e-101!GO:0044444;cytoplasmic part;5.559505484873e-90!GO:0032991;macromolecular complex;2.7429071136859e-75!GO:0005515;protein binding;6.26495132489863e-75!GO:0005634;nucleus;2.96026916473907e-64!GO:0043170;macromolecule metabolic process;2.97354219672183e-62!GO:0044238;primary metabolic process;2.25641063513885e-61!GO:0044428;nuclear part;7.34753824595992e-61!GO:0044237;cellular metabolic process;5.08148123411167e-59!GO:0003723;RNA binding;8.79628841907051e-58!GO:0016043;cellular component organization and biogenesis;5.01509840761033e-53!GO:0030529;ribonucleoprotein complex;2.87286580945297e-52!GO:0043233;organelle lumen;9.38366824853494e-49!GO:0031974;membrane-enclosed lumen;9.38366824853494e-49!GO:0019538;protein metabolic process;3.64374279486633e-46!GO:0043234;protein complex;7.34622259509238e-42!GO:0044260;cellular macromolecule metabolic process;7.19216389682547e-41!GO:0044267;cellular protein metabolic process;3.35142615095501e-40!GO:0033036;macromolecule localization;1.34001359321212e-37!GO:0005739;mitochondrion;1.74686812008203e-35!GO:0015031;protein transport;1.63307710464206e-34!GO:0043228;non-membrane-bound organelle;3.57202876368128e-34!GO:0043232;intracellular non-membrane-bound organelle;3.57202876368128e-34!GO:0031981;nuclear lumen;1.49701169004817e-33!GO:0008104;protein localization;2.72023881456762e-33!GO:0046907;intracellular transport;3.70611675449493e-33!GO:0031967;organelle envelope;7.86207396309356e-33!GO:0031975;envelope;1.1979236101411e-32!GO:0022607;cellular component assembly;1.366419350022e-32!GO:0043283;biopolymer metabolic process;1.76503485249726e-32!GO:0006996;organelle organization and biogenesis;1.80979126855271e-32!GO:0045184;establishment of protein localization;1.80979126855271e-32!GO:0065003;macromolecular complex assembly;2.55387727292242e-32!GO:0016071;mRNA metabolic process;1.72762533317333e-30!GO:0031090;organelle membrane;2.39552360926498e-30!GO:0005840;ribosome;6.94122135858134e-29!GO:0006396;RNA processing;4.90908220085898e-28!GO:0006412;translation;9.48475560410754e-28!GO:0005829;cytosol;4.94021188345343e-27!GO:0044429;mitochondrial part;8.4639763917907e-27!GO:0008380;RNA splicing;9.69962817889766e-27!GO:0003735;structural constituent of ribosome;5.85701724827142e-25!GO:0006886;intracellular protein transport;1.07791474549332e-24!GO:0006397;mRNA processing;1.24137804109481e-24!GO:0005654;nucleoplasm;3.41961225735849e-23!GO:0051649;establishment of cellular localization;4.49514131057079e-23!GO:0033279;ribosomal subunit;5.27653526840334e-23!GO:0051641;cellular localization;5.77883157035073e-23!GO:0007049;cell cycle;9.5228208075309e-22!GO:0010467;gene expression;1.17879878238372e-21!GO:0006259;DNA metabolic process;1.53659492010285e-19!GO:0005740;mitochondrial envelope;2.36966175556814e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.76635816744254e-19!GO:0031966;mitochondrial membrane;2.76635816744254e-19!GO:0008134;transcription factor binding;3.71906387785358e-19!GO:0006512;ubiquitin cycle;4.52620720201364e-19!GO:0005681;spliceosome;9.04323494171839e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.44130172629329e-18!GO:0044451;nucleoplasm part;2.82240073751514e-18!GO:0000166;nucleotide binding;6.4028401683594e-18!GO:0044265;cellular macromolecule catabolic process;1.04409819624196e-17!GO:0009059;macromolecule biosynthetic process;4.02643192589434e-17!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.04290654724164e-17!GO:0022402;cell cycle process;1.74059204790541e-16!GO:0006457;protein folding;2.24772820115251e-16!GO:0016874;ligase activity;6.39605460402433e-16!GO:0019866;organelle inner membrane;6.62006787394791e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.47123609944031e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.54000870509204e-15!GO:0006119;oxidative phosphorylation;1.5421952512096e-15!GO:0048770;pigment granule;1.99435022034393e-15!GO:0042470;melanosome;1.99435022034393e-15!GO:0019941;modification-dependent protein catabolic process;2.56926372332209e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.56926372332209e-15!GO:0022618;protein-RNA complex assembly;3.34982319771498e-15!GO:0005635;nuclear envelope;5.0524604845413e-15!GO:0005743;mitochondrial inner membrane;5.51355544170678e-15!GO:0009058;biosynthetic process;6.67628675990082e-15!GO:0044257;cellular protein catabolic process;7.23083377169171e-15!GO:0051276;chromosome organization and biogenesis;7.859926055702e-15!GO:0003676;nucleic acid binding;1.04402967578924e-14!GO:0044445;cytosolic part;1.66521520088579e-14!GO:0043412;biopolymer modification;1.7844204245656e-14!GO:0015630;microtubule cytoskeleton;2.67455595965172e-14!GO:0006323;DNA packaging;3.59783540854749e-14!GO:0044249;cellular biosynthetic process;4.17027641188826e-14!GO:0006464;protein modification process;4.42017459906216e-14!GO:0051082;unfolded protein binding;5.85075411343846e-14!GO:0043687;post-translational protein modification;7.74325779548988e-14!GO:0031965;nuclear membrane;1.30893069200761e-13!GO:0006913;nucleocytoplasmic transport;2.91461508596241e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;2.91472036202121e-13!GO:0009057;macromolecule catabolic process;3.86151795965402e-13!GO:0006605;protein targeting;5.72830789905182e-13!GO:0003712;transcription cofactor activity;8.64381251925993e-13!GO:0005694;chromosome;1.02015104703266e-12!GO:0015934;large ribosomal subunit;1.22562736103504e-12!GO:0051169;nuclear transport;1.22562736103504e-12!GO:0008565;protein transporter activity;1.83363401806535e-12!GO:0044453;nuclear membrane part;3.61776885022289e-12!GO:0005643;nuclear pore;4.6774773033699e-12!GO:0048232;male gamete generation;6.29242233725803e-12!GO:0007283;spermatogenesis;6.29242233725803e-12!GO:0043285;biopolymer catabolic process;6.86591411531172e-12!GO:0016462;pyrophosphatase activity;6.92397198171864e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.87855451886115e-12!GO:0008135;translation factor activity, nucleic acid binding;8.59729690494319e-12!GO:0044427;chromosomal part;9.11335456757683e-12!GO:0044455;mitochondrial membrane part;1.0486871000767e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;1.07985650447943e-11!GO:0017111;nucleoside-triphosphatase activity;1.33856658653449e-11!GO:0050657;nucleic acid transport;1.67386269144621e-11!GO:0051236;establishment of RNA localization;1.67386269144621e-11!GO:0050658;RNA transport;1.67386269144621e-11!GO:0019953;sexual reproduction;2.02988381863758e-11!GO:0030163;protein catabolic process;2.05596273931331e-11!GO:0032553;ribonucleotide binding;2.05596273931331e-11!GO:0032555;purine ribonucleotide binding;2.05596273931331e-11!GO:0015935;small ribosomal subunit;2.11420861934778e-11!GO:0016604;nuclear body;2.16360385092139e-11!GO:0012505;endomembrane system;2.20428442319638e-11!GO:0006403;RNA localization;2.77720338313783e-11!GO:0000502;proteasome complex (sensu Eukaryota);2.85886096194635e-11!GO:0016192;vesicle-mediated transport;4.38799176945068e-11!GO:0005746;mitochondrial respiratory chain;4.67493740853473e-11!GO:0048193;Golgi vesicle transport;5.3307877901632e-11!GO:0007276;gamete generation;5.95084625360306e-11!GO:0017076;purine nucleotide binding;6.59988829784124e-11!GO:0022403;cell cycle phase;7.21135040155087e-11!GO:0044248;cellular catabolic process;8.86233939680057e-11!GO:0005794;Golgi apparatus;2.50062428001149e-10!GO:0006446;regulation of translational initiation;3.07050210070296e-10!GO:0005730;nucleolus;3.18216476279192e-10!GO:0050136;NADH dehydrogenase (quinone) activity;3.18216476279192e-10!GO:0003954;NADH dehydrogenase activity;3.18216476279192e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.18216476279192e-10!GO:0016607;nuclear speck;3.65605288097265e-10!GO:0016881;acid-amino acid ligase activity;4.16605788026764e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.69653952549729e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.87288226565165e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.14680227617134e-10!GO:0006461;protein complex assembly;6.43083452471579e-10!GO:0019787;small conjugating protein ligase activity;6.74790461574968e-10!GO:0000785;chromatin;7.35275440935346e-10!GO:0000278;mitotic cell cycle;7.73648897112764e-10!GO:0051028;mRNA transport;1.09984802880615e-09!GO:0006413;translational initiation;1.40678426671576e-09!GO:0046930;pore complex;1.51293405893491e-09!GO:0031980;mitochondrial lumen;1.51317961337806e-09!GO:0005759;mitochondrial matrix;1.51317961337806e-09!GO:0065004;protein-DNA complex assembly;1.63938332719476e-09!GO:0008639;small protein conjugating enzyme activity;1.70567520217809e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.05470050168121e-09!GO:0004842;ubiquitin-protein ligase activity;2.25741147950322e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;3.00966154888814e-09!GO:0000375;RNA splicing, via transesterification reactions;3.00966154888814e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.00966154888814e-09!GO:0005783;endoplasmic reticulum;3.17719142545451e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.26701410025512e-09!GO:0005524;ATP binding;4.07965151112889e-09!GO:0006366;transcription from RNA polymerase II promoter;4.429034512875e-09!GO:0051301;cell division;5.21095690775567e-09!GO:0032559;adenyl ribonucleotide binding;5.38088434182162e-09!GO:0006333;chromatin assembly or disassembly;5.84150662352243e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.97585033356969e-09!GO:0016070;RNA metabolic process;7.00317649778512e-09!GO:0000279;M phase;7.66745199814528e-09!GO:0006793;phosphorus metabolic process;1.17209033014906e-08!GO:0006796;phosphate metabolic process;1.17209033014906e-08!GO:0042775;organelle ATP synthesis coupled electron transport;1.1919297325628e-08!GO:0042773;ATP synthesis coupled electron transport;1.1919297325628e-08!GO:0030964;NADH dehydrogenase complex (quinone);1.50122491836591e-08!GO:0045271;respiratory chain complex I;1.50122491836591e-08!GO:0005747;mitochondrial respiratory chain complex I;1.50122491836591e-08!GO:0030554;adenyl nucleotide binding;2.16453353406756e-08!GO:0048523;negative regulation of cellular process;2.65269365689002e-08!GO:0005773;vacuole;2.99906745640957e-08!GO:0004386;helicase activity;3.00626458749815e-08!GO:0007010;cytoskeleton organization and biogenesis;3.07398613345157e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.6910143158174e-08!GO:0051246;regulation of protein metabolic process;4.67433280469934e-08!GO:0003713;transcription coactivator activity;4.91021025288389e-08!GO:0005813;centrosome;5.15611328369376e-08!GO:0017038;protein import;6.01652905755472e-08!GO:0000323;lytic vacuole;6.08238632408758e-08!GO:0005764;lysosome;6.08238632408758e-08!GO:0003743;translation initiation factor activity;6.6302506788219e-08!GO:0005761;mitochondrial ribosome;7.75428557554817e-08!GO:0000313;organellar ribosome;7.75428557554817e-08!GO:0008026;ATP-dependent helicase activity;9.80010077194104e-08!GO:0016310;phosphorylation;1.08236083333528e-07!GO:0005815;microtubule organizing center;1.41791727649134e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.42217302513989e-07!GO:0031988;membrane-bound vesicle;2.17488827563143e-07!GO:0007067;mitosis;2.18362947719733e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.2596447088272e-07!GO:0006974;response to DNA damage stimulus;2.37504667135153e-07!GO:0000087;M phase of mitotic cell cycle;2.55998168149181e-07!GO:0005793;ER-Golgi intermediate compartment;2.59228099882627e-07!GO:0031982;vesicle;2.86005942586324e-07!GO:0007286;spermatid development;3.53693591665242e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.83098625455241e-07!GO:0016887;ATPase activity;3.85230095080758e-07!GO:0031497;chromatin assembly;4.0741025287104e-07!GO:0006334;nucleosome assembly;4.19507325634118e-07!GO:0000786;nucleosome;4.58397397276553e-07!GO:0065002;intracellular protein transport across a membrane;4.90969949176893e-07!GO:0051186;cofactor metabolic process;5.02882335090706e-07!GO:0016568;chromatin modification;5.06709620107442e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.23904276450211e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.28514856142117e-07!GO:0031410;cytoplasmic vesicle;5.48468234308932e-07!GO:0048515;spermatid differentiation;8.18005856427975e-07!GO:0005768;endosome;8.39414944976664e-07!GO:0042623;ATPase activity, coupled;9.07250871362184e-07!GO:0051726;regulation of cell cycle;9.42008088471247e-07!GO:0051170;nuclear import;9.70198327664798e-07!GO:0006606;protein import into nucleus;9.91027374737276e-07!GO:0008092;cytoskeletal protein binding;1.09122359070369e-06!GO:0030029;actin filament-based process;1.21771509656373e-06!GO:0016563;transcription activator activity;1.24306040439689e-06!GO:0048519;negative regulation of biological process;1.37949197080574e-06!GO:0000074;regulation of progression through cell cycle;1.38924836330338e-06!GO:0009055;electron carrier activity;1.44208616988344e-06!GO:0016564;transcription repressor activity;1.71215167645983e-06!GO:0031968;organelle outer membrane;2.03945779754997e-06!GO:0005741;mitochondrial outer membrane;2.19190621143199e-06!GO:0048475;coated membrane;2.21019328274838e-06!GO:0030117;membrane coat;2.21019328274838e-06!GO:0051168;nuclear export;2.49222400872906e-06!GO:0015986;ATP synthesis coupled proton transport;2.5195605072728e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.5195605072728e-06!GO:0044432;endoplasmic reticulum part;2.54060707826926e-06!GO:0009060;aerobic respiration;2.93373080037106e-06!GO:0019867;outer membrane;3.97563977452746e-06!GO:0031324;negative regulation of cellular metabolic process;3.97563977452746e-06!GO:0003724;RNA helicase activity;4.07146895199551e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.62117128125847e-06!GO:0045333;cellular respiration;5.38840428681642e-06!GO:0045786;negative regulation of progression through cell cycle;5.46148700659141e-06!GO:0000151;ubiquitin ligase complex;6.53201848934411e-06!GO:0031252;leading edge;6.71308692297591e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.82449394092282e-06!GO:0006732;coenzyme metabolic process;7.53882732173529e-06!GO:0009259;ribonucleotide metabolic process;7.63791910744304e-06!GO:0005874;microtubule;7.87136590240092e-06!GO:0006281;DNA repair;8.45853707317103e-06!GO:0012501;programmed cell death;8.81067388204184e-06!GO:0009056;catabolic process;9.33421606867181e-06!GO:0009719;response to endogenous stimulus;1.13055056540201e-05!GO:0008654;phospholipid biosynthetic process;1.23776985842964e-05!GO:0043566;structure-specific DNA binding;1.23797136177931e-05!GO:0032446;protein modification by small protein conjugation;1.4294134057738e-05!GO:0030120;vesicle coat;1.5251685445099e-05!GO:0030662;coated vesicle membrane;1.5251685445099e-05!GO:0009892;negative regulation of metabolic process;1.59263969461833e-05!GO:0006915;apoptosis;1.68600945475069e-05!GO:0008219;cell death;1.81683212013759e-05!GO:0016265;death;1.81683212013759e-05!GO:0005667;transcription factor complex;1.94411720219712e-05!GO:0000245;spliceosome assembly;1.94411720219712e-05!GO:0019829;cation-transporting ATPase activity;1.9959416964457e-05!GO:0009150;purine ribonucleotide metabolic process;2.02935320434398e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.03557451957642e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.03557451957642e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.19375676971964e-05!GO:0006163;purine nucleotide metabolic process;2.31686999676777e-05!GO:0008361;regulation of cell size;2.41114532114988e-05!GO:0003714;transcription corepressor activity;2.94920337193411e-05!GO:0031072;heat shock protein binding;2.98811311939569e-05!GO:0046034;ATP metabolic process;3.09223045957377e-05!GO:0016567;protein ubiquitination;3.09223045957377e-05!GO:0005819;spindle;3.52082331257038e-05!GO:0050794;regulation of cellular process;3.54257452471425e-05!GO:0016049;cell growth;3.61641913849775e-05!GO:0051427;hormone receptor binding;3.87561673788485e-05!GO:0009141;nucleoside triphosphate metabolic process;3.87561673788485e-05!GO:0006099;tricarboxylic acid cycle;3.90051032747538e-05!GO:0046356;acetyl-CoA catabolic process;3.90051032747538e-05!GO:0009260;ribonucleotide biosynthetic process;4.44458518614933e-05!GO:0008186;RNA-dependent ATPase activity;4.53580763563553e-05!GO:0016481;negative regulation of transcription;4.71853527079716e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.7563581689958e-05!GO:0044440;endosomal part;4.91576188991433e-05!GO:0010008;endosome membrane;4.91576188991433e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.70381779359274e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.70381779359274e-05!GO:0009142;nucleoside triphosphate biosynthetic process;6.20970962061716e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.20970962061716e-05!GO:0003729;mRNA binding;6.46823925879948e-05!GO:0003697;single-stranded DNA binding;6.80825912882524e-05!GO:0019899;enzyme binding;6.9102142729404e-05!GO:0006613;cotranslational protein targeting to membrane;6.99608573585469e-05!GO:0030532;small nuclear ribonucleoprotein complex;7.49270927277472e-05!GO:0035257;nuclear hormone receptor binding;7.52902635021352e-05!GO:0006754;ATP biosynthetic process;7.54887233451369e-05!GO:0006753;nucleoside phosphate metabolic process;7.54887233451369e-05!GO:0004674;protein serine/threonine kinase activity;7.88697331130833e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.0131611393186e-05!GO:0015078;hydrogen ion transmembrane transporter activity;8.49351010114001e-05!GO:0030133;transport vesicle;9.27694685899107e-05!GO:0009152;purine ribonucleotide biosynthetic process;9.40007086635308e-05!GO:0003924;GTPase activity;9.49284361098747e-05!GO:0006164;purine nucleotide biosynthetic process;0.00010610353823209!GO:0001558;regulation of cell growth;0.000107767110030092!GO:0006916;anti-apoptosis;0.000110224832805507!GO:0043623;cellular protein complex assembly;0.000111718995067551!GO:0005839;proteasome core complex (sensu Eukaryota);0.000117935873208107!GO:0016469;proton-transporting two-sector ATPase complex;0.000123238604885969!GO:0043069;negative regulation of programmed cell death;0.000130708014988347!GO:0004004;ATP-dependent RNA helicase activity;0.000142819227869011!GO:0009109;coenzyme catabolic process;0.000145402957076751!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000171821067885521!GO:0005770;late endosome;0.000193752660834869!GO:0005525;GTP binding;0.000193839702234028!GO:0043066;negative regulation of apoptosis;0.000204637722004041!GO:0006405;RNA export from nucleus;0.000219664953711544!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000235161666182712!GO:0051187;cofactor catabolic process;0.000243272741928875!GO:0042254;ribosome biogenesis and assembly;0.000253953888841652!GO:0005856;cytoskeleton;0.000264249050650455!GO:0005789;endoplasmic reticulum membrane;0.000275799972115689!GO:0006084;acetyl-CoA metabolic process;0.000292467937907021!GO:0000059;protein import into nucleus, docking;0.000305137803946868!GO:0051789;response to protein stimulus;0.000320989319500575!GO:0006986;response to unfolded protein;0.000320989319500575!GO:0005798;Golgi-associated vesicle;0.000401590379444737!GO:0045259;proton-transporting ATP synthase complex;0.000452732312399517!GO:0045892;negative regulation of transcription, DNA-dependent;0.000469678992295001!GO:0006260;DNA replication;0.000473368092154103!GO:0006007;glucose catabolic process;0.000484200844470262!GO:0030518;steroid hormone receptor signaling pathway;0.000535191592811147!GO:0016044;membrane organization and biogenesis;0.000553004040563464!GO:0006607;NLS-bearing substrate import into nucleus;0.000583313057899197!GO:0007017;microtubule-based process;0.000618106792843962!GO:0003779;actin binding;0.000721196183507957!GO:0048471;perinuclear region of cytoplasm;0.000726772270255175!GO:0050789;regulation of biological process;0.000775833074017332!GO:0005048;signal sequence binding;0.000862896680364881!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000876650067359937!GO:0004298;threonine endopeptidase activity;0.000903648354491273!GO:0005791;rough endoplasmic reticulum;0.00102639196608618!GO:0015631;tubulin binding;0.00104156652572266!GO:0046474;glycerophospholipid biosynthetic process;0.00112854609521543!GO:0046467;membrane lipid biosynthetic process;0.00113614348810102!GO:0016197;endosome transport;0.00123162947690995!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00125330326666026!GO:0008250;oligosaccharyl transferase complex;0.00127099495475175!GO:0044431;Golgi apparatus part;0.00134884439865732!GO:0030118;clathrin coat;0.00137660588421609!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00137660588421609!GO:0015002;heme-copper terminal oxidase activity;0.00137660588421609!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00137660588421609!GO:0004129;cytochrome-c oxidase activity;0.00137660588421609!GO:0015980;energy derivation by oxidation of organic compounds;0.00140918934848154!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00141370844969816!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00143172711367773!GO:0005875;microtubule associated complex;0.00148878012247732!GO:0030867;rough endoplasmic reticulum membrane;0.00150482602802864!GO:0030027;lamellipodium;0.00153035905598008!GO:0003702;RNA polymerase II transcription factor activity;0.0015960161936439!GO:0035258;steroid hormone receptor binding;0.00163650859010153!GO:0006402;mRNA catabolic process;0.00165631267291615!GO:0032561;guanyl ribonucleotide binding;0.00166106085725099!GO:0019001;guanyl nucleotide binding;0.00166106085725099!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00166764449034052!GO:0004812;aminoacyl-tRNA ligase activity;0.00166764449034052!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00166764449034052!GO:0005669;transcription factor TFIID complex;0.00175860527564041!GO:0016301;kinase activity;0.00178218192635329!GO:0019843;rRNA binding;0.00188293384568114!GO:0016740;transferase activity;0.0019165703054382!GO:0006612;protein targeting to membrane;0.00201154360578563!GO:0030522;intracellular receptor-mediated signaling pathway;0.00204373400759979!GO:0051128;regulation of cellular component organization and biogenesis;0.00212125659630735!GO:0008139;nuclear localization sequence binding;0.00223114887031777!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00223989092653379!GO:0043488;regulation of mRNA stability;0.00226490515600155!GO:0043487;regulation of RNA stability;0.00226490515600155!GO:0045045;secretory pathway;0.00246486274423375!GO:0007050;cell cycle arrest;0.00251783076956971!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00253399317383797!GO:0051920;peroxiredoxin activity;0.00256733241795892!GO:0006406;mRNA export from nucleus;0.00258176833287876!GO:0005769;early endosome;0.00316974784862492!GO:0043021;ribonucleoprotein binding;0.00316974784862492!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00324275736886671!GO:0043038;amino acid activation;0.00329348450125979!GO:0006418;tRNA aminoacylation for protein translation;0.00329348450125979!GO:0043039;tRNA aminoacylation;0.00329348450125979!GO:0008154;actin polymerization and/or depolymerization;0.00330940653935969!GO:0005788;endoplasmic reticulum lumen;0.0034357283400646!GO:0016859;cis-trans isomerase activity;0.00353409862874372!GO:0003690;double-stranded DNA binding;0.00355248881226255!GO:0004576;oligosaccharyl transferase activity;0.00373098685732631!GO:0008286;insulin receptor signaling pathway;0.00374764424418266!GO:0006650;glycerophospholipid metabolic process;0.00376503280493358!GO:0051252;regulation of RNA metabolic process;0.00376865172648146!GO:0009566;fertilization;0.00376865172648146!GO:0006414;translational elongation;0.00390220014709416!GO:0005762;mitochondrial large ribosomal subunit;0.00410845199436131!GO:0000315;organellar large ribosomal subunit;0.00410845199436131!GO:0006352;transcription initiation;0.00425699888455878!GO:0018196;peptidyl-asparagine modification;0.00430741049936621!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00430741049936621!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00439435916903186!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00439435916903186!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00439435916903186!GO:0005885;Arp2/3 protein complex;0.00440233927246836!GO:0016363;nuclear matrix;0.00463959226955996!GO:0030521;androgen receptor signaling pathway;0.00480068065787186!GO:0033116;ER-Golgi intermediate compartment membrane;0.00483447488606571!GO:0045454;cell redox homeostasis;0.00496216775092562!GO:0031901;early endosome membrane;0.00496216775092562!GO:0042981;regulation of apoptosis;0.00496216775092562!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00509377864145705!GO:0004667;prostaglandin-D synthase activity;0.00509377864145705!GO:0050802;circadian sleep/wake cycle, sleep;0.00509377864145705!GO:0022410;circadian sleep/wake cycle process;0.00509377864145705!GO:0042749;regulation of circadian sleep/wake cycle;0.00509377864145705!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00509377864145705!GO:0043067;regulation of programmed cell death;0.00530902051559151!GO:0030041;actin filament polymerization;0.00542918048480843!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00558803411422116!GO:0007338;single fertilization;0.00591113949055046!GO:0005905;coated pit;0.00625192382820671!GO:0030132;clathrin coat of coated pit;0.00634946518212089!GO:0006338;chromatin remodeling;0.00675246718367873!GO:0006611;protein export from nucleus;0.00686040881187771!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00688360067917145!GO:0006891;intra-Golgi vesicle-mediated transport;0.00700820937122692!GO:0031123;RNA 3'-end processing;0.00716574687102617!GO:0031124;mRNA 3'-end processing;0.00732529500213756!GO:0051087;chaperone binding;0.00760142583123362!GO:0006752;group transfer coenzyme metabolic process;0.0078636172006924!GO:0006364;rRNA processing;0.00793443491905405!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00808137090442575!GO:0007051;spindle organization and biogenesis;0.00808137090442575!GO:0008610;lipid biosynthetic process;0.0081697474057563!GO:0006950;response to stress;0.00859282269196428!GO:0016779;nucleotidyltransferase activity;0.00864358916219448!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00870405418333762!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00882327729387154!GO:0019222;regulation of metabolic process;0.00890478793326109!GO:0006096;glycolysis;0.00930051946123518!GO:0035042;fertilization, exchange of chromosomal proteins;0.00935054721107016!GO:0035041;sperm chromatin decondensation;0.00935054721107016!GO:0007059;chromosome segregation;0.00960121247296042!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00960485511329377!GO:0033673;negative regulation of kinase activity;0.00960485511329377!GO:0006469;negative regulation of protein kinase activity;0.00960485511329377!GO:0048487;beta-tubulin binding;0.00960485511329377!GO:0008287;protein serine/threonine phosphatase complex;0.0102582627270683!GO:0006643;membrane lipid metabolic process;0.0107101932055619!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0109144148119362!GO:0006376;mRNA splice site selection;0.010951979436918!GO:0000389;nuclear mRNA 3'-splice site recognition;0.010951979436918!GO:0016584;nucleosome positioning;0.0110935066334067!GO:0016072;rRNA metabolic process;0.0111006908699115!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0111093874112722!GO:0051329;interphase of mitotic cell cycle;0.0111469876289912!GO:0046489;phosphoinositide biosynthetic process;0.0117167807856444!GO:0016126;sterol biosynthetic process;0.0117508669132912!GO:0008234;cysteine-type peptidase activity;0.0117750044488012!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0120113454843535!GO:0007005;mitochondrion organization and biogenesis;0.0120114855370683!GO:0008180;signalosome;0.0123883564789875!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0123986605535714!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0124232139098095!GO:0017166;vinculin binding;0.0125397888048311!GO:0030663;COPI coated vesicle membrane;0.0127482690831878!GO:0030126;COPI vesicle coat;0.0127482690831878!GO:0001726;ruffle;0.01281150945!GO:0005832;chaperonin-containing T-complex;0.0129752541656263!GO:0051325;interphase;0.0131763895996451!GO:0022890;inorganic cation transmembrane transporter activity;0.0135763751881346!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.01392478939586!GO:0003746;translation elongation factor activity;0.014039132327408!GO:0004364;glutathione transferase activity;0.0145740143136603!GO:0048500;signal recognition particle;0.0145740143136603!GO:0000123;histone acetyltransferase complex;0.0147335290355009!GO:0006401;RNA catabolic process;0.0147335290355009!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0151139015285078!GO:0040008;regulation of growth;0.0153635054167078!GO:0030384;phosphoinositide metabolic process;0.016469567186534!GO:0050681;androgen receptor binding;0.0165662741870619!GO:0030134;ER to Golgi transport vesicle;0.0168302932996677!GO:0030127;COPII vesicle coat;0.0168488441295096!GO:0012507;ER to Golgi transport vesicle membrane;0.0168488441295096!GO:0045792;negative regulation of cell size;0.0169311077770079!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0169340119895531!GO:0006644;phospholipid metabolic process;0.0181680737439265!GO:0006383;transcription from RNA polymerase III promoter;0.0186670407782083!GO:0032940;secretion by cell;0.0198464836570099!GO:0044454;nuclear chromosome part;0.0198464836570099!GO:0030137;COPI-coated vesicle;0.0199031207844999!GO:0016251;general RNA polymerase II transcription factor activity;0.0207782531129508!GO:0051188;cofactor biosynthetic process;0.0211112996757632!GO:0005862;muscle thin filament tropomyosin;0.0219995039640552!GO:0030658;transport vesicle membrane;0.0220668581652716!GO:0046365;monosaccharide catabolic process;0.0221300242090914!GO:0007264;small GTPase mediated signal transduction;0.02230656395593!GO:0001669;acrosome;0.02230656395593!GO:0051287;NAD binding;0.0224487420892243!GO:0030119;AP-type membrane coat adaptor complex;0.0224774934120133!GO:0042802;identical protein binding;0.0226178349662062!GO:0030308;negative regulation of cell growth;0.0227516211632281!GO:0000922;spindle pole;0.022767125535873!GO:0006417;regulation of translation;0.022767125535873!GO:0019320;hexose catabolic process;0.0232502896986996!GO:0030286;dynein complex;0.0235327749318764!GO:0051348;negative regulation of transferase activity;0.0235327749318764!GO:0000314;organellar small ribosomal subunit;0.0236323364993236!GO:0005763;mitochondrial small ribosomal subunit;0.0236323364993236!GO:0005869;dynactin complex;0.0245857935623323!GO:0009117;nucleotide metabolic process;0.0247294418565804!GO:0019783;small conjugating protein-specific protease activity;0.0253524095951565!GO:0008073;ornithine decarboxylase inhibitor activity;0.0258688125833274!GO:0016787;hydrolase activity;0.0260980901459594!GO:0009108;coenzyme biosynthetic process;0.0266122241171216!GO:0008494;translation activator activity;0.0266649532614418!GO:0019208;phosphatase regulator activity;0.0266884730234912!GO:0043189;H4/H2A histone acetyltransferase complex;0.0267561542761933!GO:0016744;transferase activity, transferring aldehyde or ketonic groups;0.0269460007524636!GO:0015629;actin cytoskeleton;0.0270630835179182!GO:0000139;Golgi membrane;0.0271024367082214!GO:0008147;structural constituent of bone;0.0281966654546777!GO:0004672;protein kinase activity;0.0281966654546777!GO:0006892;post-Golgi vesicle-mediated transport;0.028528194151457!GO:0031625;ubiquitin protein ligase binding;0.0286958616770533!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0286958616770533!GO:0045047;protein targeting to ER;0.0286958616770533!GO:0003725;double-stranded RNA binding;0.0294054477877371!GO:0030131;clathrin adaptor complex;0.0296849011864749!GO:0000082;G1/S transition of mitotic cell cycle;0.029815391135395!GO:0044275;cellular carbohydrate catabolic process;0.0305523981637026!GO:0008143;poly(A) binding;0.0311166302983799!GO:0045893;positive regulation of transcription, DNA-dependent;0.0312316354867367!GO:0005684;U2-dependent spliceosome;0.031369887209135!GO:0006302;double-strand break repair;0.031369887209135!GO:0031902;late endosome membrane;0.031920031354293!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0323671388675592!GO:0006944;membrane fusion;0.0323708840827939!GO:0032984;macromolecular complex disassembly;0.0324100064397199!GO:0006337;nucleosome disassembly;0.0325907878532775!GO:0031498;chromatin disassembly;0.0325907878532775!GO:0006979;response to oxidative stress;0.0327607108780336!GO:0046488;phosphatidylinositol metabolic process;0.032767608893361!GO:0051235;maintenance of localization;0.0330952339856138!GO:0004843;ubiquitin-specific protease activity;0.0339759123874013!GO:0008017;microtubule binding;0.0341690068711381!GO:0030880;RNA polymerase complex;0.0349278933443354!GO:0006595;polyamine metabolic process;0.0351134030716514!GO:0008022;protein C-terminus binding;0.0363573829434739!GO:0043130;ubiquitin binding;0.036531572968318!GO:0032182;small conjugating protein binding;0.036531572968318!GO:0046164;alcohol catabolic process;0.0376814394286864!GO:0005784;translocon complex;0.0387198701319964!GO:0006509;membrane protein ectodomain proteolysis;0.0392549758029876!GO:0033619;membrane protein proteolysis;0.0392549758029876!GO:0003711;transcription elongation regulator activity;0.0404910548311118!GO:0007243;protein kinase cascade;0.0418439193759905!GO:0000228;nuclear chromosome;0.0420051003465118!GO:0003899;DNA-directed RNA polymerase activity;0.0420051003465118!GO:0051540;metal cluster binding;0.0420051003465118!GO:0051536;iron-sulfur cluster binding;0.0420051003465118!GO:0051321;meiotic cell cycle;0.0421110253984319!GO:0006399;tRNA metabolic process;0.0425222851619381!GO:0001725;stress fiber;0.0425222851619381!GO:0032432;actin filament bundle;0.0425222851619381!GO:0001666;response to hypoxia;0.0425222851619381!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0425974367962376!GO:0033043;regulation of organelle organization and biogenesis;0.0425974367962376!GO:0016311;dephosphorylation;0.0426080685126153!GO:0016615;malate dehydrogenase activity;0.0428334371671615!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0428334371671615!GO:0043022;ribosome binding;0.0433811851567128!GO:0005868;cytoplasmic dynein complex;0.0434703499265141!GO:0004221;ubiquitin thiolesterase activity;0.0442597003686201!GO:0035035;histone acetyltransferase binding;0.0455281175681201!GO:0006997;nuclear organization and biogenesis;0.0461440813958912!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0461440813958912!GO:0042026;protein refolding;0.0464425283279693!GO:0007289;spermatid nuclear differentiation;0.0475254332959955!GO:0044437;vacuolar part;0.0482379798984227!GO:0006749;glutathione metabolic process;0.0483652190355855!GO:0031461;cullin-RING ubiquitin ligase complex;0.0491063149979342!GO:0043087;regulation of GTPase activity;0.0491063149979342!GO:0008097;5S rRNA binding;0.0499968034551099 | |||
|sample_id=10026 | |sample_id=10026 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=testis | |sample_tissue=testis | ||
|top_motifs=MYB:8.17560130689;JUN:6.80611150557;ZNF148:5.97591500346;RFX1:4.72492737448;SOX17:3.12078970003;RFX2..5_RFXANK_RFXAP:2.85559251991;NFY{A,B,C}:2.51094352935;HLF:2.43288482437;NRF1:2.42283655055;ATF2:2.11559280834;AR:2.09459036795;NFIX:2.06309488524;TFAP2{A,C}:1.88333092253;NR5A1,2:1.8340959649;BREu{core}:1.82788668132;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.77369459296;SP1:1.69255847217;ESR1:1.67674971945;ATF4:1.62858142107;PAX5:1.34283572051;GFI1B:1.33231303273;SOX5:1.33021491385;GFI1:1.25880135164;ZNF423:1.23887832671;PATZ1:1.23395969959;ZNF143:1.20575784124;SRF:1.17335747326;HIC1:1.15608037238;ZIC1..3:1.11494778002;PAX1,9:1.11137703933;XCPE1{core}:1.0947166325;ZFP161:1.065332067;FOXN1:1.06386862341;GCM1,2:1.06338299656;NR3C1:1.01370392502;HIF1A:1.00182579065;RXR{A,B,G}:0.935325817781;MTE{core}:0.911642161148;TBP:0.869098255129;MTF1:0.858115187179;PPARG:0.84881020156;DMAP1_NCOR{1,2}_SMARC:0.814535695242;EGR1..3:0.789123060633;TFAP2B:0.68542965182;bHLH_family:0.674228000039;HMX1:0.64534600229;HBP1_HMGB_SSRP1_UBTF:0.629327328243;ATF6:0.612130136351;MYBL2:0.566137315974;MAZ:0.522643245889;ELK1,4_GABP{A,B1}:0.520396233335;TFAP4:0.508812765594;GTF2I:0.504334228613;MED-1{core}:0.500715093236;TFCP2:0.456159563328;SPZ1:0.421113104056;MYFfamily:0.413980208337;GTF2A1,2:0.400281902626;HSF1,2:0.354305483713;SNAI1..3:0.328166425477;YY1:0.323942714958;TEF:0.311240225395;SREBF1,2:0.30430002875;HNF1A:0.288166698329;CREB1:0.281529571659;HOX{A6,A7,B6,B7}:0.274134348757;STAT1,3:0.242278181918;RBPJ:0.227574965716;SMAD1..7,9:0.21326013745;FOX{D1,D2}:0.211605580157;ZEB1:0.210083571316;NHLH1,2:0.19019597598;ZBTB16:0.158905828116;NANOG{mouse}:0.14998840891;MZF1:0.139719999212;TEAD1:0.137377450386;E2F1..5:0.0848889877142;MEF2{A,B,C,D}:0.0821233124842;TLX1..3_NFIC{dimer}:0.0520923605088;REST:0.049381320238;POU6F1:0.0264384995982;NR1H4:0.0228672263704;TGIF1:0.0194745228127;HNF4A_NR2F1,2:-0.0349837979055;SOX2:-0.0599053206638;ZBTB6:-0.0675511540761;PBX1:-0.0684898365936;NFE2L1:-0.0942903863879;FOXO1,3,4:-0.116633551188;TBX4,5:-0.119148855854;EVI1:-0.15755858634;NKX3-2:-0.16460795703;EN1,2:-0.207308295739;T:-0.229193302967;FOXM1:-0.231611613262;NFATC1..3:-0.252408069083;POU2F1..3:-0.267380270826;UFEwm:-0.284975259513;GZF1:-0.289089789694;RREB1:-0.293273741502;HAND1,2:-0.295831197534;ATF5_CREB3:-0.296341492828;PAX8:-0.305313101195;EBF1:-0.30816665592;IRF7:-0.311456594448;SOX{8,9,10}:-0.313573463168;POU3F1..4:-0.32031111671;NKX6-1,2:-0.322140554721;XBP1:-0.322483168241;NKX2-2,8:-0.362989378061;ZNF238:-0.364235831538;SPIB:-0.372644484728;STAT5{A,B}:-0.381290811432;NR6A1:-0.386124497859;IKZF1:-0.420045389123;TFDP1:-0.435994001837;GATA4:-0.44918956056;HOX{A4,D4}:-0.484680491056;MAFB:-0.541007122546;KLF4:-0.548830617418;ESRRA:-0.569842415585;LHX3,4:-0.586009184069;GATA6:-0.630244014108;SPI1:-0.63085797135;LMO2:-0.642610016523;ETS1,2:-0.645561998169;AIRE:-0.673369723155;MYOD1:-0.690182585502;FOXD3:-0.709680570559;TLX2:-0.718075262463;HOXA9_MEIS1:-0.75984450471;IKZF2:-0.76009545608;ELF1,2,4:-0.763621525437;HES1:-0.802057704733;HOX{A5,B5}:-0.831215925053;STAT2,4,6:-0.840424331154;IRF1,2:-0.86602279211;ALX4:-0.877065015619;NKX2-1,4:-0.891806250764;TAL1_TCF{3,4,12}:-0.900114944416;EP300:-0.900984029558;GLI1..3:-0.91343781296;RUNX1..3:-0.914866651051;PAX3,7:-0.915594293248;NFE2:-0.94733654716;TP53:-0.964132183854;FOXQ1:-0.964696531363;NFKB1_REL_RELA:-0.970974849957;NKX2-3_NKX2-5:-0.979411201954;AHR_ARNT_ARNT2:-1.06288522661;FOS_FOS{B,L1}_JUN{B,D}:-1.08019263392;LEF1_TCF7_TCF7L1,2:-1.08174014074;RXRA_VDR{dimer}:-1.10318884284;RORA:-1.11085857391;FOSL2:-1.13149935663;PRDM1:-1.13604154673;NKX3-1:-1.15708797338;PRRX1,2:-1.21334036247;FOX{F1,F2,J1}:-1.22338533198;BACH2:-1.26462149817;PITX1..3:-1.27741187502;PAX2:-1.28835007857;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.30108162268;PDX1:-1.301651008;CEBPA,B_DDIT3:-1.30462485801;FOXL1:-1.31027461838;ADNP_IRX_SIX_ZHX:-1.37242518213;CDC5L:-1.43006135215;ZNF384:-1.45367564644;FOXP3:-1.56546052048;CDX1,2,4:-1.63231002853;DBP:-1.64683533752;NFE2L2:-1.6648603479;CUX2:-1.6813122103;POU5F1:-1.70908758273;BPTF:-1.71764488273;FOXP1:-1.76259456112;NFIL3:-1.82595234677;PAX6:-1.87922872449;ALX1:-1.95209638506;FOXA2:-1.99051428125;ONECUT1,2:-2.06242069621;VSX1,2:-2.07348498403;ARID5B:-2.32398987213;TOPORS:-2.42727787378;POU1F1:-2.48585952079;NANOG:-2.5429721201;OCT4_SOX2{dimer}:-2.60251253877;HMGA1,2:-2.65314192399;CRX:-2.84245540562;FOX{I1,J2}:-3.87359026181;PAX4:-4.24367006494 | |top_motifs=MYB:8.17560130689;JUN:6.80611150557;ZNF148:5.97591500346;RFX1:4.72492737448;SOX17:3.12078970003;RFX2..5_RFXANK_RFXAP:2.85559251991;NFY{A,B,C}:2.51094352935;HLF:2.43288482437;NRF1:2.42283655055;ATF2:2.11559280834;AR:2.09459036795;NFIX:2.06309488524;TFAP2{A,C}:1.88333092253;NR5A1,2:1.8340959649;BREu{core}:1.82788668132;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.77369459296;SP1:1.69255847217;ESR1:1.67674971945;ATF4:1.62858142107;PAX5:1.34283572051;GFI1B:1.33231303273;SOX5:1.33021491385;GFI1:1.25880135164;ZNF423:1.23887832671;PATZ1:1.23395969959;ZNF143:1.20575784124;SRF:1.17335747326;HIC1:1.15608037238;ZIC1..3:1.11494778002;PAX1,9:1.11137703933;XCPE1{core}:1.0947166325;ZFP161:1.065332067;FOXN1:1.06386862341;GCM1,2:1.06338299656;NR3C1:1.01370392502;HIF1A:1.00182579065;RXR{A,B,G}:0.935325817781;MTE{core}:0.911642161148;TBP:0.869098255129;MTF1:0.858115187179;PPARG:0.84881020156;DMAP1_NCOR{1,2}_SMARC:0.814535695242;EGR1..3:0.789123060633;TFAP2B:0.68542965182;bHLH_family:0.674228000039;HMX1:0.64534600229;HBP1_HMGB_SSRP1_UBTF:0.629327328243;ATF6:0.612130136351;MYBL2:0.566137315974;MAZ:0.522643245889;ELK1,4_GABP{A,B1}:0.520396233335;TFAP4:0.508812765594;GTF2I:0.504334228613;MED-1{core}:0.500715093236;TFCP2:0.456159563328;SPZ1:0.421113104056;MYFfamily:0.413980208337;GTF2A1,2:0.400281902626;HSF1,2:0.354305483713;SNAI1..3:0.328166425477;YY1:0.323942714958;TEF:0.311240225395;SREBF1,2:0.30430002875;HNF1A:0.288166698329;CREB1:0.281529571659;HOX{A6,A7,B6,B7}:0.274134348757;STAT1,3:0.242278181918;RBPJ:0.227574965716;SMAD1..7,9:0.21326013745;FOX{D1,D2}:0.211605580157;ZEB1:0.210083571316;NHLH1,2:0.19019597598;ZBTB16:0.158905828116;NANOG{mouse}:0.14998840891;MZF1:0.139719999212;TEAD1:0.137377450386;E2F1..5:0.0848889877142;MEF2{A,B,C,D}:0.0821233124842;TLX1..3_NFIC{dimer}:0.0520923605088;REST:0.049381320238;POU6F1:0.0264384995982;NR1H4:0.0228672263704;TGIF1:0.0194745228127;HNF4A_NR2F1,2:-0.0349837979055;SOX2:-0.0599053206638;ZBTB6:-0.0675511540761;PBX1:-0.0684898365936;NFE2L1:-0.0942903863879;FOXO1,3,4:-0.116633551188;TBX4,5:-0.119148855854;EVI1:-0.15755858634;NKX3-2:-0.16460795703;EN1,2:-0.207308295739;T:-0.229193302967;FOXM1:-0.231611613262;NFATC1..3:-0.252408069083;POU2F1..3:-0.267380270826;UFEwm:-0.284975259513;GZF1:-0.289089789694;RREB1:-0.293273741502;HAND1,2:-0.295831197534;ATF5_CREB3:-0.296341492828;PAX8:-0.305313101195;EBF1:-0.30816665592;IRF7:-0.311456594448;SOX{8,9,10}:-0.313573463168;POU3F1..4:-0.32031111671;NKX6-1,2:-0.322140554721;XBP1:-0.322483168241;NKX2-2,8:-0.362989378061;ZNF238:-0.364235831538;SPIB:-0.372644484728;STAT5{A,B}:-0.381290811432;NR6A1:-0.386124497859;IKZF1:-0.420045389123;TFDP1:-0.435994001837;GATA4:-0.44918956056;HOX{A4,D4}:-0.484680491056;MAFB:-0.541007122546;KLF4:-0.548830617418;ESRRA:-0.569842415585;LHX3,4:-0.586009184069;GATA6:-0.630244014108;SPI1:-0.63085797135;LMO2:-0.642610016523;ETS1,2:-0.645561998169;AIRE:-0.673369723155;MYOD1:-0.690182585502;FOXD3:-0.709680570559;TLX2:-0.718075262463;HOXA9_MEIS1:-0.75984450471;IKZF2:-0.76009545608;ELF1,2,4:-0.763621525437;HES1:-0.802057704733;HOX{A5,B5}:-0.831215925053;STAT2,4,6:-0.840424331154;IRF1,2:-0.86602279211;ALX4:-0.877065015619;NKX2-1,4:-0.891806250764;TAL1_TCF{3,4,12}:-0.900114944416;EP300:-0.900984029558;GLI1..3:-0.91343781296;RUNX1..3:-0.914866651051;PAX3,7:-0.915594293248;NFE2:-0.94733654716;TP53:-0.964132183854;FOXQ1:-0.964696531363;NFKB1_REL_RELA:-0.970974849957;NKX2-3_NKX2-5:-0.979411201954;AHR_ARNT_ARNT2:-1.06288522661;FOS_FOS{B,L1}_JUN{B,D}:-1.08019263392;LEF1_TCF7_TCF7L1,2:-1.08174014074;RXRA_VDR{dimer}:-1.10318884284;RORA:-1.11085857391;FOSL2:-1.13149935663;PRDM1:-1.13604154673;NKX3-1:-1.15708797338;PRRX1,2:-1.21334036247;FOX{F1,F2,J1}:-1.22338533198;BACH2:-1.26462149817;PITX1..3:-1.27741187502;PAX2:-1.28835007857;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.30108162268;PDX1:-1.301651008;CEBPA,B_DDIT3:-1.30462485801;FOXL1:-1.31027461838;ADNP_IRX_SIX_ZHX:-1.37242518213;CDC5L:-1.43006135215;ZNF384:-1.45367564644;FOXP3:-1.56546052048;CDX1,2,4:-1.63231002853;DBP:-1.64683533752;NFE2L2:-1.6648603479;CUX2:-1.6813122103;POU5F1:-1.70908758273;BPTF:-1.71764488273;FOXP1:-1.76259456112;NFIL3:-1.82595234677;PAX6:-1.87922872449;ALX1:-1.95209638506;FOXA2:-1.99051428125;ONECUT1,2:-2.06242069621;VSX1,2:-2.07348498403;ARID5B:-2.32398987213;TOPORS:-2.42727787378;POU1F1:-2.48585952079;NANOG:-2.5429721201;OCT4_SOX2{dimer}:-2.60251253877;HMGA1,2:-2.65314192399;CRX:-2.84245540562;FOX{I1,J2}:-3.87359026181;PAX4:-4.24367006494 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10026-101D8;search_select_hide=table117:FF:10026-101D8 | |||
}} | }} | ||
Latest revision as of 12:15, 3 June 2020
| Name: | testis, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10632 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10632
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10632
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0343 |
| 10 | 10 | 0.135 |
| 100 | 100 | 0.935 |
| 101 | 101 | 0.646 |
| 102 | 102 | 0.706 |
| 103 | 103 | 0.627 |
| 104 | 104 | 0.75 |
| 105 | 105 | 0.482 |
| 106 | 106 | 1.04513e-4 |
| 107 | 107 | 0.0456 |
| 108 | 108 | 0.289 |
| 109 | 109 | 0.724 |
| 11 | 11 | 0.101 |
| 110 | 110 | 0.218 |
| 111 | 111 | 0.389 |
| 112 | 112 | 0.0178 |
| 113 | 113 | 0.606 |
| 114 | 114 | 0.12 |
| 115 | 115 | 0.755 |
| 116 | 116 | 0.461 |
| 117 | 117 | 0.82 |
| 118 | 118 | 0.148 |
| 119 | 119 | 0.105 |
| 12 | 12 | 0.744 |
| 120 | 120 | 0.148 |
| 121 | 121 | 0.488 |
| 122 | 122 | 0.776 |
| 123 | 123 | 0.00773 |
| 124 | 124 | 0.212 |
| 125 | 125 | 0.652 |
| 126 | 126 | 0.449 |
| 127 | 127 | 0.463 |
| 128 | 128 | 0.0221 |
| 129 | 129 | 0.557 |
| 13 | 13 | 0.4 |
| 130 | 130 | 0.0534 |
| 131 | 131 | 0.493 |
| 132 | 132 | 0.653 |
| 133 | 133 | 0.617 |
| 134 | 134 | 0.661 |
| 135 | 135 | 0.365 |
| 136 | 136 | 0.0139 |
| 137 | 137 | 0.281 |
| 138 | 138 | 0.0873 |
| 139 | 139 | 0.253 |
| 14 | 14 | 0.334 |
| 140 | 140 | 0.0284 |
| 141 | 141 | 0.152 |
| 142 | 142 | 0.866 |
| 143 | 143 | 0.821 |
| 144 | 144 | 0.772 |
| 145 | 145 | 0.161 |
| 146 | 146 | 0.88 |
| 147 | 147 | 0.606 |
| 148 | 148 | 0.177 |
| 149 | 149 | 0.259 |
| 15 | 15 | 0.341 |
| 150 | 150 | 0.413 |
| 151 | 151 | 0.169 |
| 152 | 152 | 0.205 |
| 153 | 153 | 0.4 |
| 154 | 154 | 0.0742 |
| 155 | 155 | 0.642 |
| 156 | 156 | 0.535 |
| 157 | 157 | 0.898 |
| 158 | 158 | 0.515 |
| 159 | 159 | 0.601 |
| 16 | 16 | 0.37 |
| 160 | 160 | 0.0265 |
| 161 | 161 | 0.88 |
| 162 | 162 | 0.82 |
| 163 | 163 | 0.211 |
| 164 | 164 | 9.53702e-5 |
| 165 | 165 | 0.572 |
| 166 | 166 | 0.708 |
| 167 | 167 | 0.179 |
| 168 | 168 | 0.469 |
| 169 | 169 | 0.116 |
| 17 | 17 | 0.1 |
| 18 | 18 | 0.11 |
| 19 | 19 | 0.699 |
| 2 | 2 | 0.436 |
| 20 | 20 | 0.763 |
| 21 | 21 | 0.413 |
| 22 | 22 | 0.735 |
| 23 | 23 | 0.0398 |
| 24 | 24 | 0.559 |
| 25 | 25 | 0.911 |
| 26 | 26 | 0.127 |
| 27 | 27 | 0.269 |
| 28 | 28 | 0.71 |
| 29 | 29 | 0.61 |
| 3 | 3 | 0.0496 |
| 30 | 30 | 0.48 |
| 31 | 31 | 0.293 |
| 32 | 32 | 0.483 |
| 33 | 33 | 0.865 |
| 34 | 34 | 0.961 |
| 35 | 35 | 0.21 |
| 36 | 36 | 0.0249 |
| 37 | 37 | 0.0829 |
| 38 | 38 | 0.385 |
| 39 | 39 | 0.879 |
| 4 | 4 | 0.0718 |
| 40 | 40 | 0.471 |
| 41 | 41 | 0.252 |
| 42 | 42 | 0.248 |
| 43 | 43 | 0.227 |
| 44 | 44 | 0.415 |
| 45 | 45 | 0.642 |
| 46 | 46 | 0.0432 |
| 47 | 47 | 0.245 |
| 48 | 48 | 0.235 |
| 49 | 49 | 0.802 |
| 5 | 5 | 0.311 |
| 50 | 50 | 0.976 |
| 51 | 51 | 0.206 |
| 52 | 52 | 0.432 |
| 53 | 53 | 0.188 |
| 54 | 54 | 0.296 |
| 55 | 55 | 0.169 |
| 56 | 56 | 0.208 |
| 57 | 57 | 0.0651 |
| 58 | 58 | 0.346 |
| 59 | 59 | 0.219 |
| 6 | 6 | 0.602 |
| 60 | 60 | 0.1 |
| 61 | 61 | 0.749 |
| 62 | 62 | 0.163 |
| 63 | 63 | 0.114 |
| 64 | 64 | 0.35 |
| 65 | 65 | 0.158 |
| 66 | 66 | 6.10982e-9 |
| 67 | 67 | 0.556 |
| 68 | 68 | 0.417 |
| 69 | 69 | 0.86 |
| 7 | 7 | 0.513 |
| 70 | 70 | 0.167 |
| 71 | 71 | 0.0865 |
| 72 | 72 | 0.653 |
| 73 | 73 | 0.19 |
| 74 | 74 | 0.377 |
| 75 | 75 | 0.12 |
| 76 | 76 | 0.241 |
| 77 | 77 | 0.211 |
| 78 | 78 | 0.0571 |
| 79 | 79 | 0.504 |
| 8 | 8 | 0.305 |
| 80 | 80 | 0.915 |
| 81 | 81 | 0.26 |
| 82 | 82 | 0.251 |
| 83 | 83 | 0.848 |
| 84 | 84 | 0.456 |
| 85 | 85 | 0.0632 |
| 86 | 86 | 0.523 |
| 87 | 87 | 0.0739 |
| 88 | 88 | 0.831 |
| 89 | 89 | 0.292 |
| 9 | 9 | 0.92 |
| 90 | 90 | 0.079 |
| 91 | 91 | 0.134 |
| 92 | 92 | 0.118 |
| 93 | 93 | 0.221 |
| 94 | 94 | 0.013 |
| 95 | 95 | 0.878 |
| 96 | 96 | 0.424 |
| 97 | 97 | 0.55 |
| 98 | 98 | 0.347 |
| 99 | 99 | 0.518 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10632
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010026 human testis - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000473 (testis)
0000991 (gonad)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010026 (human testis - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
