FFCP PHASE1:Hg19::chr11:2159479..2159489,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3481 | |EntrezGene=3481 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=5466 | |HGNC=5466 | ||
|TSSclassifier=strong | |||
|UniProt=P01344 | |UniProt=P01344 | ||
|association_with_transcript=-6bp_to_X06159_5end | |association_with_transcript=-6bp_to_X06159_5end | ||
|cluster_id=chr11:2159479..2159489,- | |||
|coexpression_cluster_id=C172 | |coexpression_cluster_id=C172 | ||
|description=CAGE_peak_54_at_IGF2_5end | |description=CAGE_peak_54_at_IGF2_5end | ||
|id=chr11:2159479..2159489,- | |id=chr11:2159479..2159489,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000349;2.25e-27;19!CL:0002537;8.94e-15;5!CL:0002575;1.40e-10;2!CL:0002536;3.12e-10;2!CL:0000244;3.20e-10;4!CL:0000731;3.20e-10;4!CL:0002549;1.56e-09;2!CL:0002541;2.22e-07;3!CL:0002577;2.97e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.20e-27,19;CL:0002537,8.65e-15,5;CL:0002575,1.33e-10,2;CL:0000244,3.00e-10,4;CL:0000731,3.00e-10,4;CL:0002536,3.06e-10,2;CL:0002549,2.07e-09,2;CL:0002541,2.22e-07,3;CL:0002577,2.92e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;9.80e-07;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.30e-16!14;UBERON:0000158!3.30e-16!14;UBERON:0003124!4.76e-10!7;UBERON:0000478!3.58e-09!24;UBERON:0004923!1.81e-08!57;UBERON:0000305!7.21e-08!7;UBERON:0004119!3.52e-07!169;UBERON:0000925!3.52e-07!169;UBERON:0006595!3.52e-07!169;UBERON:0000365!6.73e-07!5 | |ontology_enrichment_uberon=UBERON:0005631!3.30e-16!14;UBERON:0000158!3.30e-16!14;UBERON:0003124!4.76e-10!7;UBERON:0000478!3.58e-09!24;UBERON:0004923!1.81e-08!57;UBERON:0000305!7.21e-08!7;UBERON:0004119!3.52e-07!169;UBERON:0000925!3.52e-07!169;UBERON:0006595!3.52e-07!169;UBERON:0000365!6.73e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.06e-28;10!UBERON:0000158;2.06e-28;10!UBERON:0000478;3.46e-25;24!UBERON:0000305;5.51e-23;7!UBERON:0001987;5.33e-11;4!UBERON:0005629;1.56e-09;2!UBERON:0005358;1.56e-09;2!UBERON:0001886;1.56e-09;2!UBERON:0004086;1.56e-09;2!UBERON:0005282;1.56e-09;2!UBERON:0005281;1.56e-09;2!UBERON:0000365;2.88e-08;5!UBERON:0003124;2.22e-07;3!UBERON:0000920;2.22e-07;3!UBERON:0005910;5.85e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.04e-37,14;UBERON:0000158,1.04e-37,14;UBERON:0000478,3.63e-25,24;UBERON:0000305,5.21e-23,7;UBERON:0004871,4.66e-20,8;UBERON:0003124,1.26e-16,7;UBERON:0001987,5.80e-11,4;UBERON:0004340,5.80e-11,4;UBERON:0005629,2.07e-09,2;UBERON:0005358,2.07e-09,2;UBERON:0001886,2.07e-09,2;UBERON:0004086,2.07e-09,2;UBERON:0005282,2.07e-09,2;UBERON:0005281,2.07e-09,2;UBERON:0004923,7.35e-09,66;UBERON:0000365,2.74e-08,5;UBERON:0006554,2.18e-07,47;UBERON:0000920,2.22e-07,3;UBERON:0001008,3.38e-07,48;UBERON:0005910,5.61e-07,6 | |||
|phase1_expression=0,0.428201047781966,0,2.00146596706261,0.893922188854576,0,0,0,0,0.245733936501509,1.39560233594486,5.24259293112413,7.91300934685361,0.247532705920093,0.331397375727916,0,0,0,0,0,0.816002764977012,0.626909442956176,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,1.21085942115945,2.30470369792,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0.125118519871964,0,0.438977620880838,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0.580969714347592,0.10366105501537,0.252320850875628,0,0,0,0,1.85747171212792,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,2.95172252503473,0,0,0,0,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0,0,0,0,1.59562869950922,0,0,0,0.532844358032199,0.714889968290738,10.3098105024374,0,0,0.710783897485092,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,0.500170521059677,0.813795071099207,0.415941723061614,0.178428988797162,0.473107245101804,0,0,0,0,0,0,0,10.7690636604507,19.2160317334079,0,0,0,0.303127571446259,16.6435439510497,8.16453791990137,0,0.306923946576125,0,0,0,0.160853921143607,0,0,0,0,0,0,3.74664293734029,0.40101294060657,0,0.114814448164607,0,0.131124414959424,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.431831832204279,1.54227252690289,0.812839312631559,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0.15350367472613,0.275673144969061,0,0.145016693914229,0,1.15741646340759,0.165284915360978,0.768760269460425,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0,0,0,0.762520775695299,0,0,0,0,0,0,0.117812402345686,0,0,0,0.975267478179181,0,0,1.36499911407986,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0.379473173765715,0,0,0,0,0.282431402330337,3.87454835404107,1.68471475667626,0.443430153536676,1.37834040124176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0.284136146806413,9.78852387424529,4.15750553165694,11.0577852755724,0,0,0,0,0.211125408127993,0.19924798825107,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0.46112780877612,0,0,14.6740533476683,0.732780747214898,34.6472604412113,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0.0884575645033392,0,0,0,0,0,3.21031058919516,0.234264445725339,0,0,0,0,0,0.30607276163049,0.758238955541855,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0.799238438328521,0,0,11.3252698588897,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.458320848023367,0,0.599037001496973,0.429226048136571,0,0.470284307407084,0.360299883542404,0,3.46646002151784,3.37905019362782,2.49393112260484,0.688992370603241,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.419636705079985,0.316801009558219,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0.339936274560377,0,10.6005511129777,0,0,0,0,0,0.628817220398664,0,0.496166021811951,0,0,0,0,0.2506898940227,0,0,0,0,0,0,1.14681839138014,0.110929051536852,0,0,0.124980407962107,0,0,0.235265819698172,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,2.83757976783418,0,0,0,0,0,0,0.327628914576042,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0,0,0,0,0,0,0,0.235939446695481,0,0,0,0,0.198916222116275,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,2.04015451374069,0,0,0,0,0,0,0.549451649953598,0,0.560544326627578,0,0,0,0.428859265059938,0,0,1.91244099532837,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487671699929078,0,0.307988420568741,16.2374020387348,0.971421986118279,0,2.18845852677505,0,0,0,0,0,0.218559560503957,0,0,0,0.392616934229891,0,0.4226557275834,0.169927114687817,0,0.257831551894309,0,0.357107877211315,0,0,0,0,0,0.473314686579554,0,0,2.645134202577,0,0.462175628631418,0.432626562123789,0,0,0,0,0,0.0918948995348449,0,0,0.267964130156178,0,0,0.213233981900981,1.90451545170992,0,0.124149428591716,0,0.0636471582781649,0.202117188958219,0.435433495793923,7.52913262387618,0.0673520530145875,0,2.66128285236811,0.325613074443898,0,1.9307228228694,1.97615444634491,0,0.611207220914332,1.22068853494722,0,0,0 | |phase1_expression=0,0.428201047781966,0,2.00146596706261,0.893922188854576,0,0,0,0,0.245733936501509,1.39560233594486,5.24259293112413,7.91300934685361,0.247532705920093,0.331397375727916,0,0,0,0,0,0.816002764977012,0.626909442956176,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,1.21085942115945,2.30470369792,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0.125118519871964,0,0.438977620880838,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0.580969714347592,0.10366105501537,0.252320850875628,0,0,0,0,1.85747171212792,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,2.95172252503473,0,0,0,0,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0,0,0,0,1.59562869950922,0,0,0,0.532844358032199,0.714889968290738,10.3098105024374,0,0,0.710783897485092,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,0.500170521059677,0.813795071099207,0.415941723061614,0.178428988797162,0.473107245101804,0,0,0,0,0,0,0,10.7690636604507,19.2160317334079,0,0,0,0.303127571446259,16.6435439510497,8.16453791990137,0,0.306923946576125,0,0,0,0.160853921143607,0,0,0,0,0,0,3.74664293734029,0.40101294060657,0,0.114814448164607,0,0.131124414959424,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.431831832204279,1.54227252690289,0.812839312631559,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0.15350367472613,0.275673144969061,0,0.145016693914229,0,1.15741646340759,0.165284915360978,0.768760269460425,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0,0,0,0.762520775695299,0,0,0,0,0,0,0.117812402345686,0,0,0,0.975267478179181,0,0,1.36499911407986,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0.379473173765715,0,0,0,0,0.282431402330337,3.87454835404107,1.68471475667626,0.443430153536676,1.37834040124176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0.284136146806413,9.78852387424529,4.15750553165694,11.0577852755724,0,0,0,0,0.211125408127993,0.19924798825107,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307801034015188,0,0.46112780877612,0,0,14.6740533476683,0.732780747214898,34.6472604412113,0,0,0,0,0,0,0,0,0,0,0.565412285735763,0,0,0.0884575645033392,0,0,0,0,0,3.21031058919516,0.234264445725339,0,0,0,0,0,0.30607276163049,0.758238955541855,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0.799238438328521,0,0,11.3252698588897,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.458320848023367,0,0.599037001496973,0.429226048136571,0,0.470284307407084,0.360299883542404,0,3.46646002151784,3.37905019362782,2.49393112260484,0.688992370603241,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.419636705079985,0.316801009558219,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0.339936274560377,0,10.6005511129777,0,0,0,0,0,0.628817220398664,0,0.496166021811951,0,0,0,0,0.2506898940227,0,0,0,0,0,0,1.14681839138014,0.110929051536852,0,0,0.124980407962107,0,0,0.235265819698172,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,2.83757976783418,0,0,0,0,0,0,0.327628914576042,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0,0,0,0,0,0,0,0.235939446695481,0,0,0,0,0.198916222116275,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,2.04015451374069,0,0,0,0,0,0,0.549451649953598,0,0.560544326627578,0,0,0,0.428859265059938,0,0,1.91244099532837,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487671699929078,0,0.307988420568741,16.2374020387348,0.971421986118279,0,2.18845852677505,0,0,0,0,0,0.218559560503957,0,0,0,0.392616934229891,0,0.4226557275834,0.169927114687817,0,0.257831551894309,0,0.357107877211315,0,0,0,0,0,0.473314686579554,0,0,2.645134202577,0,0.462175628631418,0.432626562123789,0,0,0,0,0,0.0918948995348449,0,0,0.267964130156178,0,0,0.213233981900981,1.90451545170992,0,0.124149428591716,0,0.0636471582781649,0.202117188958219,0.435433495793923,7.52913262387618,0.0673520530145875,0,2.66128285236811,0.325613074443898,0,1.9307228228694,1.97615444634491,0,0.611207220914332,1.22068853494722,0,0,0 | ||
|short_description=p54@IGF2 | |short_description=p54@IGF2 | ||
}} | }} |
Latest revision as of 08:10, 17 September 2015
Short description: | p54@IGF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_54_at_IGF2_5end |
Coexpression cluster: | C172_chorionic_skeletal_tongue_amniotic_liver_gastrointestinal_Pericytes |
Association with transcript: | -6bp_to_X06159_5end |
EntrezGene: | IGF2 |
HGNC: | 5466 |
UniProt: | P01344 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.20e-27 | 19 |
amnion mesenchymal stem cell | 8.65e-15 | 5 |
central nervous system pericyte | 1.33e-10 | 2 |
transitional epithelial cell | 3.00e-10 | 4 |
urothelial cell | 3.00e-10 | 4 |
amniotic epithelial cell | 3.06e-10 | 2 |
fibroblast of choroid plexus | 2.07e-09 | 2 |
chorionic membrane mesenchymal stem cell | 2.22e-07 | 3 |
placental epithelial cell | 2.92e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.04e-37 | 14 |
membranous layer | 1.04e-37 | 14 |
extraembryonic structure | 3.63e-25 | 24 |
amnion | 5.21e-23 | 7 |
somatic layer of lateral plate mesoderm | 4.66e-20 | 8 |
chorion | 1.26e-16 | 7 |
placenta | 5.80e-11 | 4 |
allantois | 5.80e-11 | 4 |
vascular plexus | 2.07e-09 | 2 |
ventricle of nervous system | 2.07e-09 | 2 |
choroid plexus | 2.07e-09 | 2 |
brain ventricle | 2.07e-09 | 2 |
ventricular system of brain | 2.07e-09 | 2 |
ventricular system of central nervous system | 2.07e-09 | 2 |
organ component layer | 7.35e-09 | 66 |
urothelium | 2.74e-08 | 5 |
urinary system structure | 2.18e-07 | 47 |
egg chorion | 2.22e-07 | 3 |
renal system | 3.38e-07 | 48 |
transitional epithelium | 5.61e-07 | 6 |