FFCP PHASE1:Hg19::chr14:22089953..22090019,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12101 | |HGNC=12101 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000542354,uc001wbi.2_5end | |association_with_transcript=0bp_to_ENST00000542354,uc001wbi.2_5end | ||
|cluster_id=chr14:22089953..22090019,+ | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_1_at_TRAV1-1_5end | |description=CAGE_peak_1_at_TRAV1-1_5end | ||
|id=chr14:22089953..22090019,+ | |id=chr14:22089953..22090019,+ | ||
|ontology_enrichment_celltype=CL:0000791!8.76e-28!18;CL:0000789!8.76e-28!18;CL:0002420!8.76e-28!18;CL:0002419!8.76e-28!18;CL:0000790!8.76e-28!18;CL:0000625!3.39e-20!11;CL:0000084!2.04e-18!25;CL:0000827!2.04e-18!25;CL:0002087!8.11e-14!119;CL:0000738!8.18e-14!140;CL:0000838!3.40e-11!52;CL:0000624!3.48e-11!6;CL:0000542!7.30e-11!53;CL:0000051!7.30e-11!53;CL:0002031!2.79e-10!124;CL:0000037!5.85e-09!172;CL:0000566!5.85e-09!172;CL:0002032!6.53e-08!165;CL:0000837!6.53e-08!165;CL:0000988!7.69e-08!182;CL:0000898!8.91e-07!3 | |ontology_enrichment_celltype=CL:0000791!8.76e-28!18;CL:0000789!8.76e-28!18;CL:0002420!8.76e-28!18;CL:0002419!8.76e-28!18;CL:0000790!8.76e-28!18;CL:0000625!3.39e-20!11;CL:0000084!2.04e-18!25;CL:0000827!2.04e-18!25;CL:0002087!8.11e-14!119;CL:0000738!8.18e-14!140;CL:0000838!3.40e-11!52;CL:0000624!3.48e-11!6;CL:0000542!7.30e-11!53;CL:0000051!7.30e-11!53;CL:0002031!2.79e-10!124;CL:0000037!5.85e-09!172;CL:0000566!5.85e-09!172;CL:0002032!6.53e-08!165;CL:0000837!6.53e-08!165;CL:0000988!7.69e-08!182;CL:0000898!8.91e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.13e-50;18!CL:0000789;1.13e-50;18!CL:0002419;1.13e-50;18!CL:0000625;3.88e-36;11!CL:0000084;3.36e-35;25!CL:0000624;2.47e-19;6!CL:0000898;3.49e-11;3!CL:0000542;1.87e-10;53!CL:0000226;7.58e-10;3!CL:0000842;7.58e-10;3!CL:0000623;1.75e-09;3!CL:0000815;4.44e-08;2!CL:0000792;4.44e-08;2!CL:0002677;4.44e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.15e-50,18;CL:0000789,1.15e-50,18;CL:0002420,1.15e-50,18;CL:0002419,1.15e-50,18;CL:0000790,1.15e-50,18;CL:0000625,4.22e-36,11;CL:0000084,3.40e-35,25;CL:0000827,3.40e-35,25;CL:0000838,1.84e-20,52;CL:0000542,5.63e-20,53;CL:0000051,5.63e-20,53;CL:0000624,2.32e-19,6;CL:0000898,3.21e-11,3;CL:0002087,4.04e-10,115;CL:0000226,8.07e-10,3;CL:0000842,8.07e-10,3;CL:0000623,1.70e-09,3;CL:0000825,1.70e-09,3;CL:0000738,1.97e-09,136;CL:0000815,4.22e-08,2;CL:0000792,4.22e-08,2;CL:0002677,4.22e-08,2;CL:0002031,8.01e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;1.13e-50;18!CL:0000051;1.87e-10;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.62e-15!15;UBERON:0000179!1.62e-15!15;UBERON:0000463!1.62e-15!15;UBERON:0007023!4.98e-10!115;UBERON:0002390!6.19e-10!102;UBERON:0003061!6.19e-10!102;UBERON:0002193!9.08e-10!112 | |ontology_enrichment_uberon=UBERON:0000178!1.62e-15!15;UBERON:0000179!1.62e-15!15;UBERON:0000463!1.62e-15!15;UBERON:0007023!4.98e-10!115;UBERON:0002390!6.19e-10!102;UBERON:0003061!6.19e-10!102;UBERON:0002193!9.08e-10!112 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.89e-28;15!UBERON:0000179;1.89e-28;15!UBERON:0000463;1.89e-28;15!UBERON:0002390;1.21e-17;32!UBERON:0002193;1.07e-10;42!UBERON:0002370;4.59e-08;2!UBERON:0005058;4.59e-08;2!UBERON:0009113;4.59e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.92e-28,15;UBERON:0000179,1.92e-28,15;UBERON:0000463,1.92e-28,15;UBERON:0002370,1.79e-08,4;UBERON:0005058,1.79e-08,4;UBERON:0009113,1.79e-08,4;UBERON:0003295,1.79e-08,4;UBERON:0005562,1.79e-08,4;UBERON:0004177,7.25e-08,7;UBERON:0005057,7.25e-08,7 | |||
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| ||
|short_description=p1@TRAV1-1 | |short_description=p1@TRAV1-1 | ||
}} | }} |
Latest revision as of 03:23, 19 September 2015
Short description: | p1@TRAV1-1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAV1-1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000542354, uc001wbi.2_5end |
EntrezGene: | NA |
HGNC: | 12101 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.15e-50 | 18 |
alpha-beta T cell | 1.15e-50 | 18 |
immature T cell | 1.15e-50 | 18 |
mature T cell | 1.15e-50 | 18 |
immature alpha-beta T cell | 1.15e-50 | 18 |
CD8-positive, alpha-beta T cell | 4.22e-36 | 11 |
T cell | 3.40e-35 | 25 |
pro-T cell | 3.40e-35 | 25 |
lymphoid lineage restricted progenitor cell | 1.84e-20 | 52 |
lymphocyte | 5.63e-20 | 53 |
common lymphoid progenitor | 5.63e-20 | 53 |
CD4-positive, alpha-beta T cell | 2.32e-19 | 6 |
naive T cell | 3.21e-11 | 3 |
nongranular leukocyte | 4.04e-10 | 115 |
single nucleate cell | 8.07e-10 | 3 |
mononuclear cell | 8.07e-10 | 3 |
natural killer cell | 1.70e-09 | 3 |
pro-NK cell | 1.70e-09 | 3 |
leukocyte | 1.97e-09 | 136 |
regulatory T cell | 4.22e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 4.22e-08 | 2 |
naive regulatory T cell | 4.22e-08 | 2 |
hematopoietic lineage restricted progenitor cell | 8.01e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
blood | 1.92e-28 | 15 |
haemolymphatic fluid | 1.92e-28 | 15 |
organism substance | 1.92e-28 | 15 |
thymus | 1.79e-08 | 4 |
hemolymphoid system gland | 1.79e-08 | 4 |
thymic region | 1.79e-08 | 4 |
pharyngeal gland | 1.79e-08 | 4 |
thymus primordium | 1.79e-08 | 4 |
hemopoietic organ | 7.25e-08 | 7 |
immune organ | 7.25e-08 | 7 |