FFCP PHASE1:Hg19::chr1:183213362..183213385,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:183213362..183213385,+ | |||
|coexpression_cluster_id=C362 | |coexpression_cluster_id=C362 | ||
|description=CAGE_peak_at_chr1:183213362..183213385,+ | |description=CAGE_peak_at_chr1:183213362..183213385,+ | ||
|id=chr1:183213362..183213385,+ | |id=chr1:183213362..183213385,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.72e-32!254;CL:0002076!4.65e-31!43;CL:0000223!1.87e-21!59;CL:0002368!7.40e-14!13;CL:0002251!1.42e-13!21;CL:0000244!1.87e-08!4;CL:0000731!1.87e-08!4;CL:0002077!2.01e-08!33;CL:0000220!4.49e-08!246;CL:0002159!5.33e-08!13;CL:0002321!6.69e-08!248;CL:0000240!8.22e-08!6;CL:0000311!8.22e-08!6;CL:0000079!8.22e-08!6;CL:0000237!8.22e-08!6;CL:0000036!8.22e-08!6;CL:0000357!8.22e-08!6;CL:0000114!8.22e-08!6;CL:0002202!2.45e-07!9;CL:0002632!2.45e-07!9;CL:0000076!3.25e-07!62;CL:0002621!6.18e-07!3;CL:0000082!6.68e-07!19 | |ontology_enrichment_celltype=CL:0000066!1.72e-32!254;CL:0002076!4.65e-31!43;CL:0000223!1.87e-21!59;CL:0002368!7.40e-14!13;CL:0002251!1.42e-13!21;CL:0000244!1.87e-08!4;CL:0000731!1.87e-08!4;CL:0002077!2.01e-08!33;CL:0000220!4.49e-08!246;CL:0002159!5.33e-08!13;CL:0002321!6.69e-08!248;CL:0000240!8.22e-08!6;CL:0000311!8.22e-08!6;CL:0000079!8.22e-08!6;CL:0000237!8.22e-08!6;CL:0000036!8.22e-08!6;CL:0000357!8.22e-08!6;CL:0000114!8.22e-08!6;CL:0002202!2.45e-07!9;CL:0002632!2.45e-07!9;CL:0000076!3.25e-07!62;CL:0002621!6.18e-07!3;CL:0000082!6.68e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0002368;2.83e-31;13!CL:0002076;2.32e-30;42!CL:0002621;1.64e-16;3!CL:0002623;5.16e-16;3!CL:0002328;9.57e-16;3!CL:0000240;4.93e-14;6!CL:0000311;4.93e-14;6!CL:0000079;4.93e-14;6!CL:0000237;4.93e-14;6!CL:0002202;6.62e-14;9!CL:0002632;6.62e-14;9!CL:0000244;1.60e-12;4!CL:0000731;1.60e-12;4!CL:0002327;3.62e-12;4!CL:0002251;8.67e-12;20!CL:0002536;7.11e-11;2!CL:0000312;4.81e-10;5!CL:0000622;8.22e-10;5!CL:0002159;4.41e-09;14!CL:0002231;2.92e-08;3!CL:0000154;2.99e-08;6!CL:0002166;9.88e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.04e-36,42;CL:0002368,1.75e-31,13;CL:0000223,3.01e-25,58;CL:0000066,7.15e-20,253;CL:0002621,1.17e-16,3;CL:0002328,5.89e-16,3;CL:0002623,9.35e-16,3;CL:0002202,4.75e-14,9;CL:0002632,4.75e-14,9;CL:0000240,6.05e-14,6;CL:0000311,6.05e-14,6;CL:0000079,6.05e-14,6;CL:0000237,6.05e-14,6;CL:0000036,6.05e-14,6;CL:0000357,6.05e-14,6;CL:0000114,6.05e-14,6;CL:0000244,1.37e-12,4;CL:0000731,1.37e-12,4;CL:0002327,4.74e-12,4;CL:0002251,9.14e-12,20;CL:0002536,8.72e-11,2;CL:0000312,6.15e-10,5;CL:0000622,1.17e-09,5;CL:0002159,4.53e-09,14;CL:0002231,2.97e-08,3;CL:0000154,3.98e-08,6;CL:0002166,7.91e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000357;4.93e-14;6!CL:0000114;4.93e-14;6!CL:0000223;1.81e-12;58 | |||
|ontology_enrichment_disease=DOID:305!5.37e-10!106;DOID:1749!6.93e-10!14;DOID:0050687!8.04e-07!143 | |ontology_enrichment_disease=DOID:305!5.37e-10!106;DOID:1749!6.93e-10!14;DOID:0050687!8.04e-07!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.40e-16!169;UBERON:0000925!1.40e-16!169;UBERON:0006595!1.40e-16!169;UBERON:0005911!1.36e-11!82;UBERON:0001004!1.45e-11!72;UBERON:0001007!5.74e-11!155;UBERON:0001555!5.74e-11!155;UBERON:0007026!5.74e-11!155;UBERON:0005153!1.43e-10!37;UBERON:0000365!6.70e-10!5;UBERON:0005157!2.54e-09!51;UBERON:0000161!4.25e-09!35;UBERON:0005910!3.85e-08!6;UBERON:0000065!6.83e-08!53;UBERON:0004807!1.27e-07!28;UBERON:0004921!1.35e-07!129;UBERON:0004185!1.35e-07!129;UBERON:0005178!1.62e-07!34;UBERON:0002224!1.62e-07!34;UBERON:0005181!3.35e-07!35;UBERON:0007196!3.87e-07!14;UBERON:0001558!3.87e-07!14;UBERON:0000077!6.13e-07!130;UBERON:0001949!6.18e-07!3;UBERON:0004802!6.68e-07!19;UBERON:0000115!6.68e-07!19 | |ontology_enrichment_uberon=UBERON:0004119!1.40e-16!169;UBERON:0000925!1.40e-16!169;UBERON:0006595!1.40e-16!169;UBERON:0005911!1.36e-11!82;UBERON:0001004!1.45e-11!72;UBERON:0001007!5.74e-11!155;UBERON:0001555!5.74e-11!155;UBERON:0007026!5.74e-11!155;UBERON:0005153!1.43e-10!37;UBERON:0000365!6.70e-10!5;UBERON:0005157!2.54e-09!51;UBERON:0000161!4.25e-09!35;UBERON:0005910!3.85e-08!6;UBERON:0000065!6.83e-08!53;UBERON:0004807!1.27e-07!28;UBERON:0004921!1.35e-07!129;UBERON:0004185!1.35e-07!129;UBERON:0005178!1.62e-07!34;UBERON:0002224!1.62e-07!34;UBERON:0005181!3.35e-07!35;UBERON:0007196!3.87e-07!14;UBERON:0001558!3.87e-07!14;UBERON:0000077!6.13e-07!130;UBERON:0001949!6.18e-07!3;UBERON:0004802!6.68e-07!19;UBERON:0000115!6.68e-07!19 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.64e-16;3!UBERON:0004815;9.57e-16;3!UBERON:0002031;9.57e-16;3!UBERON:0000486;2.36e-15;12!UBERON:0001911;3.62e-12;4!UBERON:0004807;1.49e-10;22!UBERON:0005911;3.61e-10;36!UBERON:0000365;4.12e-10;5!UBERON:0002185;1.18e-09;5!UBERON:0000161;2.51e-09;19!UBERON:0000166;2.51e-09;19!UBERON:0005910;1.69e-08;6!UBERON:0007196;2.98e-08;15!UBERON:0001558;2.98e-08;15!UBERON:0001044;2.99e-08;6!UBERON:0003293;2.99e-08;6!UBERON:0003294;2.99e-08;6!UBERON:0010047;2.99e-08;6!UBERON:0003408;2.99e-08;6!UBERON:0000167;2.99e-08;6!UBERON:0000165;3.67e-08;28!UBERON:0003929;2.44e-07;7!UBERON:0000485;5.06e-07;7!UBERON:0000305;6.72e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.17e-16,3;UBERON:0004815,5.89e-16,3;UBERON:0002031,5.89e-16,3;UBERON:0001004,1.19e-12,74;UBERON:0004119,4.25e-12,160;UBERON:0000925,4.25e-12,160;UBERON:0006595,4.25e-12,160;UBERON:0001911,4.74e-12,4;UBERON:0005333,4.74e-12,4;UBERON:0008425,4.74e-12,4;UBERON:0005311,4.74e-12,4;UBERON:0000365,3.64e-10,5;UBERON:0002185,8.88e-10,5;UBERON:0005153,9.43e-10,37;UBERON:0005910,1.52e-08,6;UBERON:0007196,2.46e-08,15;UBERON:0001558,2.46e-08,15;UBERON:0004807,3.59e-08,28;UBERON:0001044,3.98e-08,6;UBERON:0003293,3.98e-08,6;UBERON:0003294,3.98e-08,6;UBERON:0010047,3.98e-08,6;UBERON:0000167,3.98e-08,6;UBERON:0000161,4.03e-08,36;UBERON:0005911,4.39e-08,82;UBERON:0000166,6.05e-08,22;UBERON:0000165,7.80e-08,29;UBERON:0000930,7.80e-08,29;UBERON:0005157,2.32e-07,47;UBERON:0003102,2.48e-07,99;UBERON:0000305,7.47e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,1.31064823278103,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,1.83884244895785,1.8072355126695,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0.436094052142534,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67195621010264,2.72746120590835,2.86804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,1.42675371031213,2.24803506515239,10.354484158398,1.66659201285353,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,2.68771405118175,1.84307626415102,2.7763142037883,2.3250715081117,1.15014803749563,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0.120859449591622,6.6167135200084,3.03867263488458,0,0,0,0,0.462092022626489,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.78497203763423,10.9548338398111,21.6941611240793,4.2486267959331,0,0.31481234683064,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.79044126903985,0.670302275535787,0,0,0.86101074534246,1.68471475667626,5.76459199597678,4.59446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,1.53580351049616,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0.179021174675609,0,0,0,0,0,0,0,0,0,0.724999575434793,0.227586896570999,1.5255219017566,0.236387681767936,0,0,0,0,0.241192877250816,0,0.110579259931225,0,0,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74297483886435,0,0.141353071433941,0,0,0,2.4441205797345,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0,0.881931576729399,0.261177619741208,0,0,0,0,0,0,0,0,0.274083849293502,0,0,0.586654148204409,0.240476460754601,0,0,0.288180834308212,0,0,0.288109595976299,0,0,0.271808412147228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5476039091159,0,0,0.0788057072991982,0,0.105600336519406,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0.144921028610825,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0.214441591374926,0,0,0.463044948647668,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74705760366215,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0.733714394086716,0.115525666150338,0,0,0,0,0.20170506870352,0,0,0.163771917510097,2.21784129325568,0,0,0,0,0,0,0.496211178389294,0,0.894336993477167,0,0,0.606965604236632,0,0,0,0,0,0,0.118193840883968,0.444925607568277,0,0.157115589916002,0.560544326627578,0,0,0,0,0,0,0,0,5.18040410407592,1.19502933965765,1.38251932362818,0,0,0,0,0.9164274741762,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0.150962843566674,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0.178553938605658,5.64631794745107,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.714193294391221,0,0,0,0,0.202117188958219,0,0.342233301085281,0,0.0717222053926763,0.332660356546013,0.569822880276821,0,0,0,0,0,0,0,0,0 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| ||
|short_description=p@chr1:183213362..183213385,+ | |short_description=p@chr1:183213362..183213385,+ | ||
}} | }} |
Latest revision as of 01:11, 28 July 2015
Short description: | p@chr1:183213362..183213385, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:183213362..183213385, + |
Coexpression cluster: | C362_Small_Mallassezderived_Urothelial_Gingival_Prostate_Keratinocyte_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.04e-36 | 42 |
respiratory epithelial cell | 1.75e-31 | 13 |
endodermal cell | 3.01e-25 | 58 |
epithelial cell | 7.15e-20 | 253 |
gingival epithelial cell | 1.17e-16 | 3 |
bronchial epithelial cell | 5.89e-16 | 3 |
acinar cell of salivary gland | 9.35e-16 | 3 |
epithelial cell of tracheobronchial tree | 4.75e-14 | 9 |
epithelial cell of lower respiratory tract | 4.75e-14 | 9 |
stratified squamous epithelial cell | 6.05e-14 | 6 |
keratin accumulating cell | 6.05e-14 | 6 |
stratified epithelial cell | 6.05e-14 | 6 |
keratinizing barrier epithelial cell | 6.05e-14 | 6 |
epithelial fate stem cell | 6.05e-14 | 6 |
stratified epithelial stem cell | 6.05e-14 | 6 |
surface ectodermal cell | 6.05e-14 | 6 |
transitional epithelial cell | 1.37e-12 | 4 |
urothelial cell | 1.37e-12 | 4 |
mammary gland epithelial cell | 4.74e-12 | 4 |
epithelial cell of alimentary canal | 9.14e-12 | 20 |
amniotic epithelial cell | 8.72e-11 | 2 |
keratinocyte | 6.15e-10 | 5 |
acinar cell | 1.17e-09 | 5 |
general ecto-epithelial cell | 4.53e-09 | 14 |
epithelial cell of prostate | 2.97e-08 | 3 |
protein secreting cell | 3.98e-08 | 6 |
epithelial cell of Malassez | 7.91e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.17e-16 | 3 |
lower respiratory tract epithelium | 5.89e-16 | 3 |
epithelium of bronchus | 5.89e-16 | 3 |
respiratory system | 1.19e-12 | 74 |
endoderm-derived structure | 4.25e-12 | 160 |
endoderm | 4.25e-12 | 160 |
presumptive endoderm | 4.25e-12 | 160 |
mammary gland | 4.74e-12 | 4 |
mammary bud | 4.74e-12 | 4 |
mammary ridge | 4.74e-12 | 4 |
mammary placode | 4.74e-12 | 4 |
urothelium | 3.64e-10 | 5 |
bronchus | 8.88e-10 | 5 |
epithelial bud | 9.43e-10 | 37 |
transitional epithelium | 1.52e-08 | 6 |
tracheobronchial tree | 2.46e-08 | 15 |
lower respiratory tract | 2.46e-08 | 15 |
respiratory system epithelium | 3.59e-08 | 28 |
saliva-secreting gland | 3.98e-08 | 6 |
gland of oral region | 3.98e-08 | 6 |
gland of foregut | 3.98e-08 | 6 |
oral gland | 3.98e-08 | 6 |
oral cavity | 3.98e-08 | 6 |
orifice | 4.03e-08 | 36 |
endo-epithelium | 4.39e-08 | 82 |
oral opening | 6.05e-08 | 22 |
mouth | 7.80e-08 | 29 |
stomodeum | 7.80e-08 | 29 |
epithelial fold | 2.32e-07 | 47 |
surface structure | 2.48e-07 | 99 |
amnion | 7.47e-07 | 7 |