FFCP PHASE1:Hg19::chr1:186265399..186265414,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10216 | |EntrezGene=10216 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9364 | |HGNC=9364 | ||
|TSSclassifier=strong | |||
|UniProt=Q92954,E7EQ48,E9PLR3 | |UniProt=Q92954,E7EQ48,E9PLR3 | ||
|association_with_transcript=0bp_to_ENST00000367482,ENST00000367483,ENST00000367484,ENST00000367485,ENST00000367486,ENST00000445192,ENST00000533951,NM_001127708,NM_001127709,NM_001127710,NM_005807,uc001grt.3,uc001gru.3,uc009wyl.2,uc009wym.2_5end | |association_with_transcript=0bp_to_ENST00000367482,ENST00000367483,ENST00000367484,ENST00000367485,ENST00000367486,ENST00000445192,ENST00000533951,NM_001127708,NM_001127709,NM_001127710,NM_005807,uc001grt.3,uc001gru.3,uc009wyl.2,uc009wym.2_5end | ||
|cluster_id=chr1:186265399..186265414,+ | |||
|coexpression_cluster_id=C536 | |coexpression_cluster_id=C536 | ||
|description=CAGE_peak_3_at_PRG4_5end | |description=CAGE_peak_3_at_PRG4_5end | ||
|id=chr1:186265399..186265414,+ | |id=chr1:186265399..186265414,+ | ||
|ontology_enrichment_celltype=CL:0000153!5.30e-14!9;CL:0000447!5.30e-14!9;CL:0000136!5.79e-12!15;CL:0000667!3.11e-11!6;CL:0000058!3.11e-11!6;CL:0000138!3.11e-11!6;CL:0000327!1.51e-08!14;CL:0000499!1.18e-07!27 | |ontology_enrichment_celltype=CL:0000153!5.30e-14!9;CL:0000447!5.30e-14!9;CL:0000136!5.79e-12!15;CL:0000667!3.11e-11!6;CL:0000058!3.11e-11!6;CL:0000138!3.11e-11!6;CL:0000327!1.51e-08!14;CL:0000499!1.18e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000153;2.06e-31;9!CL:0000447;2.06e-31;9!CL:0000138;1.30e-24;6!CL:0000327;1.59e-18;15!CL:0002549;2.19e-13;2!CL:0000499;2.20e-12;28!CL:0000214;7.72e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.76e-31,9;CL:0000447,1.76e-31,9;CL:0000058,1.47e-24,6;CL:0000138,1.47e-24,6;CL:0000327,1.45e-18,15;CL:0002549,2.40e-13,2;CL:0000499,1.96e-12,28;CL:0000214,6.09e-09,3;CL:0000151,3.14e-07,36 | |||
|ontology_enrichment_development_v019=UBERON:0010227;2.67e-07;1!UBERON:0010115;5.34e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.96e-10!115;UBERON:0001013!2.37e-10!14;UBERON:0002300!8.52e-09!3 | |ontology_enrichment_uberon=UBERON:0007023!1.96e-10!115;UBERON:0001013!2.37e-10!14;UBERON:0002300!8.52e-09!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0005629;2.19e-13;2!UBERON:0005358;2.19e-13;2!UBERON:0001886;2.19e-13;2!UBERON:0004086;2.19e-13;2!UBERON:0005282;2.19e-13;2!UBERON:0005281;2.19e-13;2!UBERON:0006915;7.72e-09;3!UBERON:0007616;7.72e-09;3!UBERON:0002217;7.72e-09;3!UBERON:0002018;7.72e-09;3!UBERON:0002107;7.01e-08;19!UBERON:0006925;7.01e-08;19!UBERON:0002079;2.67e-07;1!UBERON:0002363;5.34e-07;1!UBERON:0002426;5.34e-07;1!UBERON:0003831;5.34e-07;1!UBERON:0003898;5.34e-07;1!UBERON:0004830;5.34e-07;1!UBERON:0003830;5.34e-07;1!UBERON:0005175;5.34e-07;1!UBERON:0001774;5.34e-07;1!UBERON:0001103;5.34e-07;1!UBERON:0001013;5.48e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005629,2.40e-13,2;UBERON:0005358,2.40e-13,2;UBERON:0001886,2.40e-13,2;UBERON:0004086,2.40e-13,2;UBERON:0005282,2.40e-13,2;UBERON:0005281,2.40e-13,2;UBERON:0006915,6.09e-09,3;UBERON:0007616,6.09e-09,3;UBERON:0002217,6.09e-09,3;UBERON:0002018,6.09e-09,3;UBERON:0002107,6.56e-08,19;UBERON:0006925,6.56e-08,19;UBERON:0008836,6.56e-08,19;UBERON:0002079,3.62e-07,1;UBERON:0002426,4.08e-07,1;UBERON:0003831,4.08e-07,1;UBERON:0003898,4.08e-07,1;UBERON:0004830,4.08e-07,1;UBERON:0003830,4.08e-07,1;UBERON:0005175,4.08e-07,1;UBERON:0001774,4.08e-07,1;UBERON:0001103,4.08e-07,1;UBERON:0010084,4.08e-07,1;UBERON:0002363,4.89e-07,1;UBERON:0007645,4.89e-07,1;UBERON:0007647,4.89e-07,1;UBERON:0010115,4.89e-07,1;UBERON:0001013,5.94e-07,14;UBERON:0008835,8.61e-07,22;UBERON:0003894,8.61e-07,22 | |||
|phase1_expression=0,0.214100523890983,0,0,0.893922188854576,0.872338524100369,0,10.1075179748293,0.261185628199839,0,0,0,0,0,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,1.50401373190767,1.30361867064741,131.222181263431,18.4921250715002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.20565453344219,4.03323147135999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,2.94848165003288,7.68026878685825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,2.15381273209015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.246381468041427,0,0.581051892299796,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81251743096572,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68886108238131,4.61012850143863,0,0,0,0,0,6.7783536559281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3441308683503,0,0,0,0,0,0,0,0,0,0,0,1.39473591775749,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06149077404007,0,0,0,0,0,1.60515529459758,0,0,0,0,0,0,0,1.45329133145522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146178634172371,0.0821154570532092,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0.429226048136571,0.223171457441873,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,2.1440859791201,0.662091970365432,0,0,0,0,0,0,0,0,10.1121041237877,6.62534444561107,0,0,0,0,0.640724475406168,0,0,0,0,0,0,0.544017803369474,1.5041393641362,2.75711019087115,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,2.53733164907686,0,1.10961172300523,0.189403005275089,0,2.66943366478961,0.457680136793847,0.453692771289717,2.17612080815893,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.357382720883282,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,2.66923297826242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0.0939839179798536,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,2.77305377178851,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0,0,0,0,0,0,0.653150243690884,0,0,0.430333232356058,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0.214100523890983,0,0,0.893922188854576,0.872338524100369,0,10.1075179748293,0.261185628199839,0,0,0,0,0,0.662794751455832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,1.50401373190767,1.30361867064741,131.222181263431,18.4921250715002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.20565453344219,4.03323147135999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,2.94848165003288,7.68026878685825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,2.15381273209015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.246381468041427,0,0.581051892299796,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81251743096572,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68886108238131,4.61012850143863,0,0,0,0,0,6.7783536559281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3441308683503,0,0,0,0,0,0,0,0,0,0,0,1.39473591775749,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06149077404007,0,0,0,0,0,1.60515529459758,0,0,0,0,0,0,0,1.45329133145522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146178634172371,0.0821154570532092,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0.429226048136571,0.223171457441873,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,2.1440859791201,0.662091970365432,0,0,0,0,0,0,0,0,10.1121041237877,6.62534444561107,0,0,0,0,0.640724475406168,0,0,0,0,0,0,0.544017803369474,1.5041393641362,2.75711019087115,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,2.53733164907686,0,1.10961172300523,0.189403005275089,0,2.66943366478961,0.457680136793847,0.453692771289717,2.17612080815893,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.357382720883282,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,2.66923297826242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0.0939839179798536,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,2.77305377178851,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0,0,0,0,0,0,0.653150243690884,0,0,0.430333232356058,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p3@PRG4 | |short_description=p3@PRG4 | ||
}} | }} |
Latest revision as of 07:10, 19 September 2015
Short description: | p3@PRG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PRG4_5end |
Coexpression cluster: | C536_Chondrocyte_Mallassezderived_liver_mesothelioma_Adipocyte_serous_tenocyte |
Association with transcript: | 0bp_to_ENST00000367482, ENST00000367483, ENST00000367484, ENST00000367485, ENST00000367486, ENST00000445192, ENST00000533951, NM_001127708, NM_001127709, NM_001127710, NM_005807, uc001grt.3, uc001gru.3, uc009wyl.2, uc009wym.2_5end |
EntrezGene: | PRG4 |
HGNC: | 9364 |
UniProt: | Q92954E7EQ48E9PLR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.76e-31 | 9 |
carbohydrate secreting cell | 1.76e-31 | 9 |
chondroblast | 1.47e-24 | 6 |
chondrocyte | 1.47e-24 | 6 |
extracellular matrix secreting cell | 1.45e-18 | 15 |
fibroblast of choroid plexus | 2.40e-13 | 2 |
stromal cell | 1.96e-12 | 28 |
synovial cell | 6.09e-09 | 3 |
secretory cell | 3.14e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
vascular plexus | 2.40e-13 | 2 |
ventricle of nervous system | 2.40e-13 | 2 |
choroid plexus | 2.40e-13 | 2 |
brain ventricle | 2.40e-13 | 2 |
ventricular system of brain | 2.40e-13 | 2 |
ventricular system of central nervous system | 2.40e-13 | 2 |
stratified squamous epithelium | 6.09e-09 | 3 |
layer of synovial tissue | 6.09e-09 | 3 |
synovial joint | 6.09e-09 | 3 |
synovial membrane of synovial joint | 6.09e-09 | 3 |
liver | 6.56e-08 | 19 |
digestive gland | 6.56e-08 | 19 |
liver bud | 6.56e-08 | 19 |
left cardiac atrium | 3.62e-07 | 1 |
chest muscle | 4.08e-07 | 1 |
respiratory system muscle | 4.08e-07 | 1 |
skeletal muscle of trunk | 4.08e-07 | 1 |
respiratory system skeletal muscle | 4.08e-07 | 1 |
thoracic segment muscle | 4.08e-07 | 1 |
chest organ | 4.08e-07 | 1 |
muscle of trunk | 4.08e-07 | 1 |
diaphragm | 4.08e-07 | 1 |
future diaphragm | 4.08e-07 | 1 |
dura mater | 4.89e-07 | 1 |
future meninx | 4.89e-07 | 1 |
ectomeninx | 4.89e-07 | 1 |
future dura mater | 4.89e-07 | 1 |
adipose tissue | 5.94e-07 | 14 |
hepatic diverticulum | 8.61e-07 | 22 |
liver primordium | 8.61e-07 | 22 |