FFCP PHASE1:Hg19::chr19:10541426..10541456,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:10541426..10541456,+
|short_description=p4@PDE4A
|description=CAGE_peak_4_at_PDE4A_5end
|association_with_transcript=-64bp_to_ENST00000293683,NM_001111308...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5141 | |EntrezGene=5141 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8780 | |HGNC=8780 | ||
|TSSclassifier=strong | |||
|UniProt=P27815 | |UniProt=P27815 | ||
|association_with_transcript=-64bp_to_ENST00000293683,NM_001111308,uc002mok.2_5end | |||
|cluster_id=chr19:10541426..10541456,+ | |||
|description=CAGE_peak_4_at_PDE4A_5end | |||
|id=chr19:10541426..10541456,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.93e-25!42;CL:0000557!1.88e-24!71;CL:0000766!2.45e-23!76;CL:0002009!4.76e-23!65;CL:0000839!9.74e-23!70;CL:0002194!6.11e-22!63;CL:0000576!6.11e-22!63;CL:0000040!6.11e-22!63;CL:0000559!6.11e-22!63;CL:0000860!1.85e-21!45;CL:0000763!1.00e-15!112;CL:0000049!1.00e-15!112;CL:0002320!4.95e-12!365;CL:0000134!7.12e-12!358;CL:0000048!3.71e-11!430;CL:0000738!7.54e-11!140;CL:0000723!6.59e-10!436;CL:0000219!5.26e-09!390;CL:0002031!6.81e-09!124;CL:0000034!1.89e-08!444;CL:0002087!2.12e-08!119;CL:0000037!4.48e-07!172;CL:0000566!4.48e-07!172;CL:0002032!4.98e-07!165;CL:0000837!4.98e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.93e-23;33!CL:0002057;9.93e-23;33!CL:0000473;1.94e-21;39!CL:0000234;1.94e-21;39!CL:0000576;2.77e-19;48!CL:0000766;4.20e-18;69!CL:0000763;3.88e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.05e-34,48;CL:0000234,1.05e-34,48;CL:0000557,2.92e-34,67;CL:0000766,1.81e-33,72;CL:0002009,7.40e-33,61;CL:0000860,3.01e-32,42;CL:0002057,3.01e-32,42;CL:0000839,7.35e-32,66;CL:0002194,2.34e-31,59;CL:0000576,2.34e-31,59;CL:0000040,2.34e-31,59;CL:0000559,2.34e-31,59;CL:0000763,2.64e-25,108;CL:0000049,2.64e-25,108;CL:0000738,2.31e-17,136;CL:0002031,1.41e-14,120;CL:0002087,4.50e-14,115;CL:0000037,8.37e-14,168;CL:0002032,1.17e-13,161;CL:0000837,1.17e-13,161;CL:0000988,2.03e-13,177;CL:0002320,7.37e-13,361;CL:0000134,1.80e-12,354;CL:0000048,1.98e-10,427;CL:0000219,2.83e-10,386;CL:0000723,1.28e-09,433;CL:0000034,1.32e-08,441;CL:0002393,3.55e-08,9;CL:0002397,3.55e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;9.00e-23;42!CL:0000049;1.30e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!8.97e-21!80;UBERON:0002405!3.62e-19!115;UBERON:0002390!7.49e-19!102;UBERON:0003061!7.49e-19!102;UBERON:0002193!1.94e-18!112;UBERON:0001474!6.08e-18!86;UBERON:0003081!4.78e-17!216;UBERON:0004765!1.85e-15!101;UBERON:0001434!1.85e-15!101;UBERON:0002204!1.51e-14!167;UBERON:0002384!2.17e-12!375;UBERON:0000926!1.19e-08!448;UBERON:0004120!1.19e-08!448;UBERON:0006603!1.19e-08!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.31e-28,76;UBERON:0002390,3.03e-25,98;UBERON:0003061,3.03e-25,98;UBERON:0001474,6.26e-25,82;UBERON:0002405,3.63e-24,93;UBERON:0002193,2.97e-23,108;UBERON:0004765,1.04e-21,90;UBERON:0001434,3.08e-21,100;UBERON:0003081,5.57e-21,203;UBERON:0002204,3.75e-16,167;UBERON:0002384,1.82e-13,371;UBERON:0000926,1.35e-12,315;UBERON:0004120,1.35e-12,315;UBERON:0006603,1.35e-12,315 | |||
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| ||
|short_description=p4@PDE4A | |||
}} | }} |
Latest revision as of 01:36, 25 September 2015
Short description: | p4@PDE4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PDE4A_5end |
Coexpression cluster: | NA |
Association with transcript: | -64bp_to_ENST00000293683, NM_001111308, uc002mok.2_5end |
EntrezGene: | PDE4A |
HGNC: | 8780 |
UniProt: | P27815 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.05e-34 | 48 |
phagocyte | 1.05e-34 | 48 |
granulocyte monocyte progenitor cell | 2.92e-34 | 67 |
myeloid leukocyte | 1.81e-33 | 72 |
macrophage dendritic cell progenitor | 7.40e-33 | 61 |
classical monocyte | 3.01e-32 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.01e-32 | 42 |
myeloid lineage restricted progenitor cell | 7.35e-32 | 66 |
monopoietic cell | 2.34e-31 | 59 |
monocyte | 2.34e-31 | 59 |
monoblast | 2.34e-31 | 59 |
promonocyte | 2.34e-31 | 59 |
myeloid cell | 2.64e-25 | 108 |
common myeloid progenitor | 2.64e-25 | 108 |
leukocyte | 2.31e-17 | 136 |
hematopoietic lineage restricted progenitor cell | 1.41e-14 | 120 |
nongranular leukocyte | 4.50e-14 | 115 |
hematopoietic stem cell | 8.37e-14 | 168 |
hematopoietic oligopotent progenitor cell | 1.17e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.17e-13 | 161 |
hematopoietic cell | 2.03e-13 | 177 |
connective tissue cell | 7.37e-13 | 361 |
mesenchymal cell | 1.80e-12 | 354 |
multi fate stem cell | 1.98e-10 | 427 |
motile cell | 2.83e-10 | 386 |
somatic stem cell | 1.28e-09 | 433 |
stem cell | 1.32e-08 | 441 |
intermediate monocyte | 3.55e-08 | 9 |
CD14-positive, CD16-positive monocyte | 3.55e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.31e-28 | 76 |
hematopoietic system | 3.03e-25 | 98 |
blood island | 3.03e-25 | 98 |
bone element | 6.26e-25 | 82 |
immune system | 3.63e-24 | 93 |
hemolymphoid system | 2.97e-23 | 108 |
skeletal element | 1.04e-21 | 90 |
skeletal system | 3.08e-21 | 100 |
lateral plate mesoderm | 5.57e-21 | 203 |
musculoskeletal system | 3.75e-16 | 167 |
connective tissue | 1.82e-13 | 371 |
mesoderm | 1.35e-12 | 315 |
mesoderm-derived structure | 1.35e-12 | 315 |
presumptive mesoderm | 1.35e-12 | 315 |