FFCP PHASE1:Hg19::chr2:190044480..190044494,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1290 | |EntrezGene=1290 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2210 | |HGNC=2210 | ||
|TSSclassifier=strong | |||
|UniProt=P05997 | |UniProt=P05997 | ||
|association_with_transcript=110bp_to_ENST00000374866,NM_000393,uc002uqk.2_5end | |association_with_transcript=110bp_to_ENST00000374866,NM_000393,uc002uqk.2_5end | ||
|cluster_id=chr2:190044480..190044494,- | |||
|coexpression_cluster_id=C811 | |coexpression_cluster_id=C811 | ||
|description=CAGE_peak_1_at_COL5A2_5end | |description=CAGE_peak_1_at_COL5A2_5end | ||
|id=chr2:190044480..190044494,- | |id=chr2:190044480..190044494,- | ||
|ontology_enrichment_celltype=CL:0000055!8.86e-42!180;CL:0000057!1.28e-21!75;CL:0000222!1.29e-15!119;CL:0000183!1.86e-14!59;CL:0000680!2.16e-14!57;CL:0000056!2.16e-14!57;CL:0000355!2.16e-14!57;CL:0000187!1.07e-13!54;CL:0000220!1.25e-12!246;CL:0002321!2.64e-12!248;CL:0000393!2.76e-12!60;CL:0000211!2.76e-12!60;CL:0000192!8.06e-11!42;CL:0000514!8.06e-11!42;CL:0002620!8.02e-09!23;CL:0000144!8.21e-08!625;CL:0002371!9.33e-08!591;CL:0000359!2.02e-07!32 | |ontology_enrichment_celltype=CL:0000055!8.86e-42!180;CL:0000057!1.28e-21!75;CL:0000222!1.29e-15!119;CL:0000183!1.86e-14!59;CL:0000680!2.16e-14!57;CL:0000056!2.16e-14!57;CL:0000355!2.16e-14!57;CL:0000187!1.07e-13!54;CL:0000220!1.25e-12!246;CL:0002321!2.64e-12!248;CL:0000393!2.76e-12!60;CL:0000211!2.76e-12!60;CL:0000192!8.06e-11!42;CL:0000514!8.06e-11!42;CL:0002620!8.02e-09!23;CL:0000144!8.21e-08!625;CL:0002371!9.33e-08!591;CL:0000359!2.02e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0000134;1.33e-09;55!CL:0000057;5.36e-09;73!CL:0002620;6.61e-09;23!CL:0000723;7.84e-09;61!CL:0000048;8.94e-09;58!CL:0002320;1.68e-08;188!CL:0000187;3.05e-08;55!CL:0000192;3.35e-08;43!CL:0000359;4.12e-07;32!CL:0000393;4.85e-07;61!CL:0000211;4.85e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.14e-22,76;CL:0000222,4.84e-16,121;CL:0000680,7.51e-15,58;CL:0000056,7.51e-15,58;CL:0000355,7.51e-15,58;CL:0000187,3.80e-14,55;CL:0000393,1.04e-12,61;CL:0000211,1.04e-12,61;CL:0002321,4.58e-12,250;CL:0000192,3.15e-11,43;CL:0000514,3.15e-11,43;CL:0002620,6.58e-09,23;CL:0000359,1.72e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;3.35e-08;43!CL:0000355;3.50e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.01e-17!83;UBERON:0002329!1.01e-17!83;UBERON:0003077!1.01e-17!83;UBERON:0003059!1.01e-17!83;UBERON:0007282!1.01e-17!83;UBERON:0009618!1.01e-17!83;UBERON:0007285!1.01e-17!83;UBERON:0000475!5.92e-17!365;UBERON:0005256!2.37e-15!143;UBERON:0004290!4.18e-15!70;UBERON:0001134!2.04e-14!61;UBERON:0002036!2.04e-14!61;UBERON:0003082!2.04e-14!61;UBERON:0002385!3.81e-14!63;UBERON:0001015!3.81e-14!63;UBERON:0000383!3.81e-14!63;UBERON:0000486!8.38e-14!82;UBERON:0004872!8.09e-13!84;UBERON:0002049!1.12e-12!79;UBERON:0007798!1.12e-12!79;UBERON:0000468!2.07e-12!659;UBERON:0002100!5.04e-12!216;UBERON:0000490!2.63e-10!138;UBERON:0003102!5.18e-10!95;UBERON:0003914!6.85e-10!118;UBERON:0000481!9.93e-10!347;UBERON:0000119!1.26e-09!312;UBERON:0000055!2.27e-09!69;UBERON:0004535!2.51e-09!110;UBERON:0001009!4.06e-09!113;UBERON:0000483!4.44e-09!309;UBERON:0001981!5.91e-09!60;UBERON:0007500!5.91e-09!60;UBERON:0004537!5.91e-09!60;UBERON:0006965!5.91e-09!60;UBERON:0002199!1.91e-08!45;UBERON:0002416!1.91e-08!45;UBERON:0000467!6.73e-08!625;UBERON:0003104!7.32e-08!238;UBERON:0009142!7.32e-08!238;UBERON:0001637!9.67e-08!42;UBERON:0003509!9.67e-08!42;UBERON:0004572!9.67e-08!42;UBERON:0000480!1.07e-07!626;UBERON:0002097!1.81e-07!40;UBERON:0004573!7.51e-07!33;UBERON:0004571!7.51e-07!33 | |ontology_enrichment_uberon=UBERON:0000914!1.01e-17!83;UBERON:0002329!1.01e-17!83;UBERON:0003077!1.01e-17!83;UBERON:0003059!1.01e-17!83;UBERON:0007282!1.01e-17!83;UBERON:0009618!1.01e-17!83;UBERON:0007285!1.01e-17!83;UBERON:0000475!5.92e-17!365;UBERON:0005256!2.37e-15!143;UBERON:0004290!4.18e-15!70;UBERON:0001134!2.04e-14!61;UBERON:0002036!2.04e-14!61;UBERON:0003082!2.04e-14!61;UBERON:0002385!3.81e-14!63;UBERON:0001015!3.81e-14!63;UBERON:0000383!3.81e-14!63;UBERON:0000486!8.38e-14!82;UBERON:0004872!8.09e-13!84;UBERON:0002049!1.12e-12!79;UBERON:0007798!1.12e-12!79;UBERON:0000468!2.07e-12!659;UBERON:0002100!5.04e-12!216;UBERON:0000490!2.63e-10!138;UBERON:0003102!5.18e-10!95;UBERON:0003914!6.85e-10!118;UBERON:0000481!9.93e-10!347;UBERON:0000119!1.26e-09!312;UBERON:0000055!2.27e-09!69;UBERON:0004535!2.51e-09!110;UBERON:0001009!4.06e-09!113;UBERON:0000483!4.44e-09!309;UBERON:0001981!5.91e-09!60;UBERON:0007500!5.91e-09!60;UBERON:0004537!5.91e-09!60;UBERON:0006965!5.91e-09!60;UBERON:0002199!1.91e-08!45;UBERON:0002416!1.91e-08!45;UBERON:0000467!6.73e-08!625;UBERON:0003104!7.32e-08!238;UBERON:0009142!7.32e-08!238;UBERON:0001637!9.67e-08!42;UBERON:0003509!9.67e-08!42;UBERON:0004572!9.67e-08!42;UBERON:0000480!1.07e-07!626;UBERON:0002097!1.81e-07!40;UBERON:0004573!7.51e-07!33;UBERON:0004571!7.51e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;3.65e-08;198 | |||
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|phase1_expression=812.284033718659,724.730273370978,921.700848383555,978.716857893615,1241.21095922458,743.232422533514,473.670772174741,170.564365825244,122.757245253924,75.6860524424647,6.28021051175185,118.832106438814,119.222674159261,404.468441473432,428.496806816195,145.222231633583,150.673632005994,130.72550617934,142.964310045619,158.456801744826,143.004484562221,159.234998510869,72.1314687570263,52.5597792279875,119.391050254657,0,0,0,0,0,4.4896675761662,6.43594857135249,21.0844143144775,3.69754010166788,0,0,0,4.9859586767869,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.23779651843358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,99.9608151887243,393.701404646034,503.522768539822,379.872549156179,575.535921410001,367.910158160492,1386.97869165712,1075.46306336883,35.5450912536895,55.432349365641,45.322749417653,19.2539240981638,30.6008042165735,20.0223599103592,0,0.174129737299267,0.132957960518865,0,0,0,47.1066905459091,80.8620519399757,56.2367612604303,157.155607854875,218.559206265361,34.1146372005684,61.8625100948959,45.9981831321405,89.653098197051,106.441154859165,159.923238892331,36.4930610744886,110.560112069321,61.0320713374142,258.435281374281,83.3166464890464,64.8889886889631,50.675166217495,50.5944903637415,43.6662203401339,48.7316638854883,0,0,38.376276588543,1073.45941566189,486.007903768657,423.312151059861,2260.5594081214,292.601415313645,550.585403339746,292.492248299392,627.768910721672,468.995030347448,512.169975208954,302.567982663012,1346.7783911846,1078.60133062656,330.861861749321,38.3956894501294,26.8121756125891,49.9158593043016,122.249313088159,109.587983337225,80.7592138537929,223.140509181598,87.7037025606023,249.015132633595,594.001428641027,432.964393166753,388.638901547537,290.32172929376,137.193932872564,82.0777490360085,152.939391747269,645.736080315713,456.053840148941,455.972508781521,389.072388238872,1348.65128110886,1432.11584941731,1004.76914339748,1090.23095207463,556.895868004524,1579.8517915598,864.140563947572,930.29514331386,653.704867626482,914.819997860671,687.428643060691,500.132899797404,2132.89763183982,579.82832530007,376.933196706214,31.1149973592908,58.6404159270295,12.3325976017272,0.731842236777572,0.927708378250397,17.5452853732973,17.3113961875669,8.07426722802011,8.75945661781992,472.477587636044,492.079317717557,118.796032363133,329.236860974673,238.942108432633,0,0,0,0,0,0,0,0,0,39.1222390951064,246.825521894065,618.595739031094,768.855560546384,7.60530208930985,0,19.4960669204863,0,65.4298493049364,164.01882664539,55.2043935605387,2.24803506515239,2.01057944823262,39.7204429730092,210.146356925159,293.261609448841,47.6293428683402,33.5038870377972,460.124672710185,198.792598566999,73.6146964996811,96.6491093351759,0,0.858486162094873,0.246217006087397,0,0.148631162288728,29.0574885359009,236.182872247597,86.4828093178558,17.6430289724611,7.26584846284905,11.8848630541215,0,0.088048434013226,2.69526550203004,1.29707958075265,1.13618190083742,23.6212166766869,24.4472592357298,22.2713149699089,65.007529488628,31.465212767217,17.1195542971033,46.3038820861537,265.077883392433,564.568289139098,151.076868791157,781.964608618798,497.142459734117,237.530073468236,593.307938100846,521.077258925944,157.153705674169,109.223831657924,123.087046705438,996.41363780363,970.750052045292,493.12096173168,271.989713885269,1136.18806012992,304.90147107937,439.800051129936,584.798950720797,362.602039017321,0,0,0,1036.37750000109,987.81264817338,65.6129763187305,309.542433655284,197.462745970918,195.534571857966,0,0,0,0,26.9340301675811,26.0279707715243,12.3726210044431,23.4522771468088,12.1208362814101,0,0,0,408.562667424736,179.561217060424,182.832625973622,656.564009852758,553.308294259999,441.093654849915,337.601558008999,581.427864673953,188.748228366467,183.147336187734,573.226691536082,203.359192901499,222.07451858042,333.057768844122,438.537295630274,0,0,0,20.6126748583456,143.134477979027,187.784372157731,1162.88129524661,1753.30304481611,1117.5884960325,905.559367790039,1117.05692471261,1330.58363569992,529.852497208618,147.116047887733,276.818729763165,176.491258273676,234.703001990997,167.923996874641,53.0572983707222,112.28362336984,1.56537681191024,623.442453533815,406.791669327006,346.430704322799,69.4847403877414,27.6485060204849,44.7079368430807,169.521500597782,109.457039161912,31.8453475398511,40.4823018558107,127.17447458416,75.5713538182418,175.031398653329,105.856542283374,7.39141191830611,9.97291210714469,54.4015653974893,0,0,1.79515087581472,61.338738745845,10.4121086292577,50.9022597539748,831.817018409832,1019.65240001863,120.595762979196,85.1578922307843,676.479344643912,168.787074138045,195.487695118484,265.561357276204,171.330859598272,489.514055864723,337.308830044496,177.612291535154,766.654858954055,60.328994106757,44.3959055613395,71.5907317094617,21.0408184179544,33.4688795494046,1702.1903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| ||
|short_description=p1@COL5A2 | |short_description=p1@COL5A2 | ||
}} | }} |
Latest revision as of 02:03, 19 September 2015
Short description: | p1@COL5A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COL5A2_5end |
Coexpression cluster: | C811_Smooth_Fibroblast_Preadipocyte_Chondrocyte_hepatic_basal_Adipocyte |
Association with transcript: | 110bp_to_ENST00000374866, NM_000393, uc002uqk.2_5end |
EntrezGene: | COL5A2 |
HGNC: | 2210 |
UniProt: | P05997 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.14e-22 | 76 |
mesodermal cell | 4.84e-16 | 121 |
muscle precursor cell | 7.51e-15 | 58 |
myoblast | 7.51e-15 | 58 |
multi-potent skeletal muscle stem cell | 7.51e-15 | 58 |
muscle cell | 3.80e-14 | 55 |
electrically responsive cell | 1.04e-12 | 61 |
electrically active cell | 1.04e-12 | 61 |
embryonic cell | 4.58e-12 | 250 |
smooth muscle cell | 3.15e-11 | 43 |
smooth muscle myoblast | 3.15e-11 | 43 |
skin fibroblast | 6.58e-09 | 23 |
vascular associated smooth muscle cell | 1.72e-07 | 32 |