FFCP PHASE1:Hg19::chr2:220495870..220495877,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6508 | |EntrezGene=6508 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11029 | |HGNC=11029 | ||
|TSSclassifier=strong | |||
|UniProt=E9PCP1 | |UniProt=E9PCP1 | ||
|association_with_transcript=18bp_to_ENST00000413743_5end | |association_with_transcript=18bp_to_ENST00000413743_5end | ||
|cluster_id=chr2:220495870..220495877,+ | |||
|coexpression_cluster_id=C20 | |coexpression_cluster_id=C20 | ||
|description=CAGE_peak_18_at_SLC4A3_5end | |description=CAGE_peak_18_at_SLC4A3_5end | ||
|id=chr2:220495870..220495877,+ | |id=chr2:220495870..220495877,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;2.21e-15;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004140;1.15e-29;1!UBERON:0010226;2.73e-29;1!UBERON:0005062;2.35e-08;4!UBERON:0007284;2.35e-08;4 | |||
|ontology_enrichment_disease=DOID:114!3.28e-37!2;DOID:178!1.88e-19!1;DOID:326!1.88e-19!1;DOID:3978!1.88e-19!1;DOID:3394!1.88e-19!1;DOID:5844!1.88e-19!1;DOID:1287!3.57e-19!4 | |ontology_enrichment_disease=DOID:114!3.28e-37!2;DOID:178!1.88e-19!1;DOID:326!1.88e-19!1;DOID:3978!1.88e-19!1;DOID:3394!1.88e-19!1;DOID:5844!1.88e-19!1;DOID:1287!3.57e-19!4 | ||
|ontology_enrichment_disease_v019=DOID:114;4.77e-57;2!DOID:178;2.73e-29;1!DOID:326;2.73e-29;1!DOID:3978;2.73e-29;1!DOID:3394;2.73e-29;1!DOID:5844;2.73e-29;1!DOID:1287;3.65e-29;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,4.77e-57,2;DOID:178,2.37e-29,1;DOID:326,2.37e-29,1;DOID:3978,2.37e-29,1;DOID:3394,2.37e-29,1;DOID:5844,2.37e-29,1;DOID:1287,3.65e-29,4 | |||
|ontology_enrichment_uberon=UBERON:0007100!2.67e-42!27;UBERON:0004151!5.50e-25!3;UBERON:0003978!8.95e-25!3;UBERON:0009751!8.95e-25!3;UBERON:0000946!8.95e-25!3;UBERON:0002523!8.95e-25!3;UBERON:0005983!8.95e-25!3;UBERON:0002165!8.95e-25!3;UBERON:0002062!8.95e-25!3;UBERON:0007280!8.95e-25!3;UBERON:0003103!1.20e-20!69;UBERON:0002084!1.56e-19!1;UBERON:0002082!1.56e-19!1;UBERON:0004706!1.56e-19!1;UBERON:0002146!2.71e-19!1;UBERON:0005623!2.71e-19!1;UBERON:0002079!3.25e-19!1;UBERON:0002135!3.91e-19!1;UBERON:0000948!7.05e-19!24;UBERON:0005498!7.05e-19!24;UBERON:0004140!7.05e-19!24;UBERON:0009881!7.05e-19!24;UBERON:0004141!7.05e-19!24;UBERON:0003084!7.05e-19!24;UBERON:0007005!7.05e-19!24;UBERON:0004139!7.05e-19!24;UBERON:0004291!7.05e-19!24;UBERON:0002081!2.72e-10!2;UBERON:0002133!2.99e-10!2;UBERON:0003127!3.27e-10!2;UBERON:0001009!8.35e-10!113;UBERON:0002300!2.19e-07!3;UBERON:0007023!2.23e-07!115 | |ontology_enrichment_uberon=UBERON:0007100!2.67e-42!27;UBERON:0004151!5.50e-25!3;UBERON:0003978!8.95e-25!3;UBERON:0009751!8.95e-25!3;UBERON:0000946!8.95e-25!3;UBERON:0002523!8.95e-25!3;UBERON:0005983!8.95e-25!3;UBERON:0002165!8.95e-25!3;UBERON:0002062!8.95e-25!3;UBERON:0007280!8.95e-25!3;UBERON:0003103!1.20e-20!69;UBERON:0002084!1.56e-19!1;UBERON:0002082!1.56e-19!1;UBERON:0004706!1.56e-19!1;UBERON:0002146!2.71e-19!1;UBERON:0005623!2.71e-19!1;UBERON:0002079!3.25e-19!1;UBERON:0002135!3.91e-19!1;UBERON:0000948!7.05e-19!24;UBERON:0005498!7.05e-19!24;UBERON:0004140!7.05e-19!24;UBERON:0009881!7.05e-19!24;UBERON:0004141!7.05e-19!24;UBERON:0003084!7.05e-19!24;UBERON:0007005!7.05e-19!24;UBERON:0004139!7.05e-19!24;UBERON:0004291!7.05e-19!24;UBERON:0002081!2.72e-10!2;UBERON:0002133!2.99e-10!2;UBERON:0003127!3.27e-10!2;UBERON:0001009!8.35e-10!113;UBERON:0002300!2.19e-07!3;UBERON:0007023!2.23e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;9.14e-41;25!UBERON:0002084;2.73e-29;1!UBERON:0002146;2.73e-29;1!UBERON:0002082;2.73e-29;1!UBERON:0005623;2.73e-29;1!UBERON:0000948;2.80e-12;22!UBERON:0003978;1.04e-10;3!UBERON:0004151;1.04e-10;3!UBERON:0000946;1.04e-10;3!UBERON:0003103;1.07e-08;61 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,8.48e-38,27;UBERON:0002084,1.78e-29,1;UBERON:0002082,1.78e-29,1;UBERON:0010226,1.78e-29,1;UBERON:0002146,4.20e-29,1;UBERON:0005623,4.20e-29,1;UBERON:0003103,3.04e-15,68;UBERON:0000948,2.52e-11,24;UBERON:0005498,2.52e-11,24;UBERON:0004140,2.52e-11,24;UBERON:0009881,2.52e-11,24;UBERON:0004141,2.52e-11,24;UBERON:0003084,2.52e-11,24;UBERON:0007005,2.52e-11,24;UBERON:0004139,2.52e-11,24;UBERON:0004291,2.52e-11,24;UBERON:0004151,8.99e-11,3;UBERON:0003978,1.20e-10,3;UBERON:0009751,1.20e-10,3;UBERON:0000946,1.20e-10,3;UBERON:0002523,1.20e-10,3;UBERON:0005983,1.20e-10,3;UBERON:0002165,1.20e-10,3;UBERON:0002062,1.20e-10,3;UBERON:0007280,1.20e-10,3;UBERON:0001009,2.41e-09,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,1.14580212005842,0,1.39775300349294,2.14613024068285,3.12440040418622,2.28423806454869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,1.98627591109629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,1.14580212005842,0,1.39775300349294,2.14613024068285,3.12440040418622,2.28423806454869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,1.98627591109629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p18@SLC4A3 | |short_description=p18@SLC4A3 | ||
}} | }} |
Latest revision as of 22:31, 24 September 2015
Short description: | p18@SLC4A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_SLC4A3_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 18bp_to_ENST00000413743_5end |
EntrezGene: | SLC4A3 |
HGNC: | 11029 |
UniProt: | E9PCP1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 8.48e-38 | 27 |
heart left ventricle | 1.78e-29 | 1 |
cardiac ventricle | 1.78e-29 | 1 |
future cardiac ventricle | 1.78e-29 | 1 |
pulmonary valve | 4.20e-29 | 1 |
semi-lunar valve | 4.20e-29 | 1 |
compound organ | 3.04e-15 | 68 |
heart | 2.52e-11 | 24 |
primitive heart tube | 2.52e-11 | 24 |
primary heart field | 2.52e-11 | 24 |
anterior lateral plate mesoderm | 2.52e-11 | 24 |
heart tube | 2.52e-11 | 24 |
heart primordium | 2.52e-11 | 24 |
cardiac mesoderm | 2.52e-11 | 24 |
cardiogenic plate | 2.52e-11 | 24 |
heart rudiment | 2.52e-11 | 24 |
cardiac chamber | 8.99e-11 | 3 |
valve | 1.20e-10 | 3 |
cardiac mesenchyme | 1.20e-10 | 3 |
cardial valve | 1.20e-10 | 3 |
tunica intima | 1.20e-10 | 3 |
heart layer | 1.20e-10 | 3 |
endocardium | 1.20e-10 | 3 |
endocardial cushion | 1.20e-10 | 3 |
presumptive endocardium | 1.20e-10 | 3 |
circulatory system | 2.41e-09 | 112 |
Ontology term | p-value | n |
---|---|---|
heart disease | 4.77e-57 | 2 |
vascular disease | 2.37e-29 | 1 |
ischemia | 2.37e-29 | 1 |
extrinsic cardiomyopathy | 2.37e-29 | 1 |
myocardial ischemia | 2.37e-29 | 1 |
myocardial infarction | 2.37e-29 | 1 |
cardiovascular system disease | 3.65e-29 | 4 |