FFCP PHASE1:Hg19::chr3:191075002..191075014,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:191075002..191075014,+ | |||
|coexpression_cluster_id=C161 | |coexpression_cluster_id=C161 | ||
|description=CAGE_peak_at_chr3:191075002..191075014,+ | |description=CAGE_peak_at_chr3:191075002..191075014,+ | ||
|id=chr3:191075002..191075014,+ | |id=chr3:191075002..191075014,+ | ||
|ontology_enrichment_celltype=CL:0000076!9.85e-11!62;CL:0002097!3.66e-07!2 | |ontology_enrichment_celltype=CL:0000076!9.85e-11!62;CL:0002097!3.66e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002544;9.49e-20;6!CL:0002097;1.15e-15;2!CL:0002545;2.05e-15;2!CL:1000413;1.58e-13;9!CL:0000174;6.73e-11;3!CL:0002592;9.90e-11;3!CL:0000076;1.37e-07;63!CL:0000071;3.04e-07;18!CL:0000077;5.83e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002544,7.13e-20,6;CL:0002097,1.15e-15,2;CL:0002545,1.78e-15,2;CL:1000413,1.31e-13,9;CL:0000076,1.45e-11,63;CL:0000174,6.73e-11,3;CL:0002592,9.90e-11,3;CL:0000213,2.62e-08,58;CL:0000215,2.62e-08,58;CL:0000071,2.77e-07,18;CL:0002546,2.77e-07,18;CL:0000077,6.19e-07,19 | |||
|ontology_enrichment_development_v019=CL:0002546;3.04e-07;18 | |||
|ontology_enrichment_disease=DOID:4231!5.56e-07!2;DOID:1907!5.56e-07!2;DOID:1749!9.19e-07!14 | |ontology_enrichment_disease=DOID:4231!5.56e-07!2;DOID:1907!5.56e-07!2;DOID:1749!9.19e-07!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002369!5.09e-10!3;UBERON:0001235!5.09e-10!3;UBERON:0006858!5.09e-10!3 | |ontology_enrichment_uberon=UBERON:0002369!5.09e-10!3;UBERON:0001235!5.09e-10!3;UBERON:0006858!5.09e-10!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0005800;2.05e-15;2!UBERON:0001515;2.05e-15;2!UBERON:0003915;1.58e-13;9!UBERON:0004700;1.58e-13;9!UBERON:0001917;1.58e-13;9!UBERON:0002369;6.73e-11;3!UBERON:0001235;6.73e-11;3!UBERON:0006858;6.73e-11;3!UBERON:0003498;9.90e-11;3!UBERON:0005985;9.90e-11;3!UBERON:0001621;9.90e-11;3!UBERON:0004573;7.94e-08;33!UBERON:0004571;7.94e-08;33!UBERON:0004638;3.04e-07;18!UBERON:0001986;3.04e-07;18!UBERON:0004852;3.04e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005800,1.78e-15,2;UBERON:0001515,1.78e-15,2;UBERON:0003915,1.31e-13,9;UBERON:0004700,1.31e-13,9;UBERON:0001917,1.31e-13,9;UBERON:0002369,6.73e-11,3;UBERON:0001235,6.73e-11,3;UBERON:0006858,6.73e-11,3;UBERON:0001621,9.90e-11,3;UBERON:0004573,1.96e-08,33;UBERON:0004571,1.96e-08,33;UBERON:0004638,2.77e-07,18;UBERON:0001986,2.77e-07,18;UBERON:0004852,2.77e-07,18;UBERON:0003498,6.04e-07,5;UBERON:0005985,6.04e-07,5;UBERON:0001637,9.24e-07,42;UBERON:0003509,9.24e-07,42;UBERON:0004572,9.24e-07,42 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0.251085279189606,0,0.246301768349837,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,1.69592382577203,0,0,0.208994966536811,0,0,0,0,0,0,0,1.62028389576352,0,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0.292311015483596,0,0,0,0,0.302256294682921,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0.0895585227028483,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0.183138929636687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.485442086998054,2.563197838382,0,0,0.890894042497916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.416024019039416,0,0.0979923974143777,0.0870592065804026,0,0.343972064943233,0,0,0,0,0.264768380074501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314408610199332,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0.398095888698616,0,0.343395705182793,0,0,0.192619830407303,17.5842104927439,1.04397716786085,0,0,0,0,0.617602894321944,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0.567515953566836,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0.251085279189606,0,0.246301768349837,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,1.69592382577203,0,0,0.208994966536811,0,0,0,0,0,0,0,1.62028389576352,0,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0.292311015483596,0,0,0,0,0.302256294682921,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0.0895585227028483,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0.183138929636687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.485442086998054,2.563197838382,0,0,0.890894042497916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.652931232636591,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.416024019039416,0,0.0979923974143777,0.0870592065804026,0,0.343972064943233,0,0,0,0,0.264768380074501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0.137539436597234,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314408610199332,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0.398095888698616,0,0.343395705182793,0,0,0.192619830407303,17.5842104927439,1.04397716786085,0,0,0,0,0.617602894321944,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0.567515953566836,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:191075002..191075014,+ | |short_description=p@chr3:191075002..191075014,+ | ||
}} | }} |
Latest revision as of 19:28, 29 July 2015
Short description: | p@chr3:191075002..191075014, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:191075002..191075014, + |
Coexpression cluster: | C161_mesothelioma_Mesothelial_acute_mesenchymal_extraskeletal_renal_placenta |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic endothelial cell | 7.13e-20 | 6 |
cortical cell of adrenal gland | 1.15e-15 | 2 |
thoracic aorta endothelial cell | 1.78e-15 | 2 |
endothelial cell of artery | 1.31e-13 | 9 |
squamous epithelial cell | 1.45e-11 | 63 |
steroid hormone secreting cell | 6.73e-11 | 3 |
smooth muscle cell of the coronary artery | 9.90e-11 | 3 |
lining cell | 2.62e-08 | 58 |
barrier cell | 2.62e-08 | 58 |
blood vessel endothelial cell | 2.77e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.77e-07 | 18 |
mesothelial cell | 6.19e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
segment of aorta | 1.78e-15 | 2 |
thoracic aorta | 1.78e-15 | 2 |
endothelial tube | 1.31e-13 | 9 |
arterial system endothelium | 1.31e-13 | 9 |
endothelium of artery | 1.31e-13 | 9 |
adrenal gland | 6.73e-11 | 3 |
adrenal cortex | 6.73e-11 | 3 |
adrenal/interrenal gland | 6.73e-11 | 3 |
coronary artery | 9.90e-11 | 3 |
systemic artery | 1.96e-08 | 33 |
systemic arterial system | 1.96e-08 | 33 |
blood vessel endothelium | 2.77e-07 | 18 |
endothelium | 2.77e-07 | 18 |
cardiovascular system endothelium | 2.77e-07 | 18 |
heart blood vessel | 6.04e-07 | 5 |
coronary vessel | 6.04e-07 | 5 |
artery | 9.24e-07 | 42 |
arterial blood vessel | 9.24e-07 | 42 |
arterial system | 9.24e-07 | 42 |