FFCP PHASE1:Hg19::chr9:118915849..118915859,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5069 | |EntrezGene=5069 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8602 | |HGNC=8602 | ||
|TSSclassifier=strong | |||
|UniProt=Q13219,Q7Z613,Q86YM8,Q8IWT8 | |UniProt=Q13219,Q7Z613,Q86YM8,Q8IWT8 | ||
|association_with_transcript=-211bp_to_NM_002581,uc004bjn.2_5end | |association_with_transcript=-211bp_to_NM_002581,uc004bjn.2_5end | ||
|cluster_id=chr9:118915849..118915859,+ | |||
|coexpression_cluster_id=C4794 | |coexpression_cluster_id=C4794 | ||
|description=CAGE_peak_16_at_PAPPA_5end | |description=CAGE_peak_16_at_PAPPA_5end | ||
|id=chr9:118915849..118915859,+ | |id=chr9:118915849..118915859,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.49e-21!180;CL:0000057!1.28e-18!75;CL:0000187!1.02e-14!54;CL:0000680!2.22e-13!57;CL:0000056!2.22e-13!57;CL:0000355!2.22e-13!57;CL:0000183!1.43e-12!59;CL:0000393!3.45e-12!60;CL:0000211!3.45e-12!60;CL:0000192!7.03e-09!42;CL:0000514!7.03e-09!42;CL:0002494!1.65e-08!16;CL:0000048!3.22e-07!430;CL:0000188!3.60e-07!9;CL:0000723!4.98e-07!436 | |ontology_enrichment_celltype=CL:0000055!2.49e-21!180;CL:0000057!1.28e-18!75;CL:0000187!1.02e-14!54;CL:0000680!2.22e-13!57;CL:0000056!2.22e-13!57;CL:0000355!2.22e-13!57;CL:0000183!1.43e-12!59;CL:0000393!3.45e-12!60;CL:0000211!3.45e-12!60;CL:0000192!7.03e-09!42;CL:0000514!7.03e-09!42;CL:0002494!1.65e-08!16;CL:0000048!3.22e-07!430;CL:0000188!3.60e-07!9;CL:0000723!4.98e-07!436 | ||
|ontology_enrichment_celltype_v019=CL:0002549;3.15e-18;2!CL:0002548;1.56e-13;6!CL:0002541;9.35e-13;3!CL:0000342;5.53e-10;1!CL:0002565;5.53e-10;1!CL:0002539;1.88e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002549,2.43e-18,2;CL:0002548,2.06e-13,6;CL:0002541,9.95e-13,3;CL:0000342,6.33e-10,1;CL:0002565,6.33e-10,1;CL:0002539,1.40e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.64e-10;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3571;5.53e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,8.99e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0001134!8.05e-12!61;UBERON:0002036!8.05e-12!61;UBERON:0003082!8.05e-12!61;UBERON:0004290!2.81e-11!70;UBERON:0000914!3.97e-11!83;UBERON:0002329!3.97e-11!83;UBERON:0003077!3.97e-11!83;UBERON:0003059!3.97e-11!83;UBERON:0007282!3.97e-11!83;UBERON:0009618!3.97e-11!83;UBERON:0007285!3.97e-11!83;UBERON:0002385!4.01e-11!63;UBERON:0001015!4.01e-11!63;UBERON:0000383!4.01e-11!63;UBERON:0002200!1.80e-09!11;UBERON:0006876!1.80e-09!11;UBERON:0000486!1.14e-08!82;UBERON:0005256!1.22e-07!143;UBERON:0002100!2.50e-07!216;UBERON:0000475!9.74e-07!365 | |ontology_enrichment_uberon=UBERON:0001134!8.05e-12!61;UBERON:0002036!8.05e-12!61;UBERON:0003082!8.05e-12!61;UBERON:0004290!2.81e-11!70;UBERON:0000914!3.97e-11!83;UBERON:0002329!3.97e-11!83;UBERON:0003077!3.97e-11!83;UBERON:0003059!3.97e-11!83;UBERON:0007282!3.97e-11!83;UBERON:0009618!3.97e-11!83;UBERON:0007285!3.97e-11!83;UBERON:0002385!4.01e-11!63;UBERON:0001015!4.01e-11!63;UBERON:0000383!4.01e-11!63;UBERON:0002200!1.80e-09!11;UBERON:0006876!1.80e-09!11;UBERON:0000486!1.14e-08!82;UBERON:0005256!1.22e-07!143;UBERON:0002100!2.50e-07!216;UBERON:0000475!9.74e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0005629;3.15e-18;2!UBERON:0005358;3.15e-18;2!UBERON:0001886;3.15e-18;2!UBERON:0004086;3.15e-18;2!UBERON:0005282;3.15e-18;2!UBERON:0005281;3.15e-18;2!UBERON:0006876;8.88e-13;11!UBERON:0003124;9.35e-13;3!UBERON:0000920;9.35e-13;3!UBERON:0002506;5.53e-10;1!UBERON:0001769;5.53e-10;1!UBERON:0000488;1.39e-09;4!UBERON:0004237;1.88e-08;10!UBERON:0004695;1.88e-08;10!UBERON:0002111;1.88e-08;10!UBERON:0004178;1.88e-08;10!UBERON:0005284;7.76e-08;5!UBERON:0007625;1.00e-07;11!UBERON:0000947;6.44e-07;21!UBERON:0010191;6.44e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005629,2.43e-18,2;UBERON:0005358,2.43e-18,2;UBERON:0001886,2.43e-18,2;UBERON:0004086,2.43e-18,2;UBERON:0005282,2.43e-18,2;UBERON:0005281,2.43e-18,2;UBERON:0006876,8.12e-13,11;UBERON:0000920,9.95e-13,3;UBERON:0003124,4.66e-12,7;UBERON:0002506,6.33e-10,1;UBERON:0001769,6.33e-10,1;UBERON:0000488,1.39e-09,4;UBERON:0004237,1.40e-08,10;UBERON:0004695,1.40e-08,10;UBERON:0002111,1.40e-08,10;UBERON:0004178,1.40e-08,10;UBERON:0004535,6.81e-08,109;UBERON:0005284,7.01e-08,5;UBERON:0007625,1.01e-07,11;UBERON:0001009,1.23e-07,112;UBERON:0000947,5.25e-07,21;UBERON:0010191,5.25e-07,21 | |||
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| ||
|short_description=p16@PAPPA | |short_description=p16@PAPPA | ||
}} | }} |
Latest revision as of 17:46, 24 September 2015
Short description: | p16@PAPPA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_PAPPA_5end |
Coexpression cluster: | C4794_placenta_Smooth_Fibroblast_neuroectodermal_Lens_mesenchymal_chorionic |
Association with transcript: | -211bp_to_NM_002581, uc004bjn.2_5end |
EntrezGene: | PAPPA |
HGNC: | 8602 |
UniProt: | Q13219Q7Z613Q86YM8Q8IWT8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of choroid plexus | 2.43e-18 | 2 |
cardiac fibroblast | 2.06e-13 | 6 |
chorionic membrane mesenchymal stem cell | 9.95e-13 | 3 |
pigment cell (sensu Vertebrata) | 6.33e-10 | 1 |
iris pigment epithelial cell | 6.33e-10 | 1 |
aortic smooth muscle cell | 1.40e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
vascular plexus | 2.43e-18 | 2 |
ventricle of nervous system | 2.43e-18 | 2 |
choroid plexus | 2.43e-18 | 2 |
brain ventricle | 2.43e-18 | 2 |
ventricular system of brain | 2.43e-18 | 2 |
ventricular system of central nervous system | 2.43e-18 | 2 |
vasculature of organ | 8.12e-13 | 11 |
egg chorion | 9.95e-13 | 3 |
chorion | 4.66e-12 | 7 |
iris epithelium | 6.33e-10 | 1 |
iris | 6.33e-10 | 1 |
atypical epithelium | 1.39e-09 | 4 |
blood vessel smooth muscle | 1.40e-08 | 10 |
arterial system smooth muscle | 1.40e-08 | 10 |
artery smooth muscle tissue | 1.40e-08 | 10 |
aorta smooth muscle tissue | 1.40e-08 | 10 |
cardiovascular system | 6.81e-08 | 109 |
brain vasculature | 7.01e-08 | 5 |
pigment epithelium of eye | 1.01e-07 | 11 |
circulatory system | 1.23e-07 | 112 |
aorta | 5.25e-07 | 21 |
aortic system | 5.25e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 8.99e-10 | 1 |