Personal tools

DOID:3093: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{DOID
{{DOID
|id=DOID:3093
|alt_id=DOID:1193;;DOID:3195;;DOID:4695
|name=nervous system cancer
|namespace=disease_ontology
|def="An organ system cancer located_in the nervous sytem that affects the central or peripheral nervous system." [url:http\://emedicine.medscape.com/oncology, url:http\://en.wikipedia.org/wiki/Nervous_system_disease]
|xref=MSH:D009380;;SNOMEDCT_2010_1_31:188306000;;UMLS_CUI:C0027665;;UMLS_CUI:C0153643;;UMLS_CUI:C1334956
|is_a=DOID:0050686
|synonym="malignant neoplasm of nervous system" EXACT [];;"neoplasm of nervous system (disorder)" EXACT [SNOMEDCT_2005_07_31:126950007];;"nervous system neoplasm" EXACT [CSP2005:2012-5157];;"neural neoplasm" EXACT [];;"neural tumor" EXACT [NCI2004_11_17:C35562];;"tumor of the nervous system" EXACT [NCI2004_11_17:C3268]
|comment=
|comment=
|alt_id=DOID:1193;;DOID:3195;;DOID:4695
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An organ system cancer located_in the nervous sytem that affects the central or peripheral nervous system." [url:http://emedicine.medscape.com/oncology, url:http://en.wikipedia.org/wiki/Nervous_system_disease]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3093
|is_a=DOID:0050686
|is_obsolete=
|located_in=
|located_in=
|name=nervous system cancer
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="malignant neoplasm of nervous system" EXACT [];;"neoplasm of nervous system (disorder)" EXACT [SNOMEDCT_2005_07_31:126950007];;"nervous system neoplasm" EXACT [CSP2005:2012-5157];;"neural neoplasm" EXACT [];;"neural tumor" EXACT [NCI2004_11_17:C35562];;"tumor of the nervous system" EXACT [NCI2004_11_17:C3268]
|union_of=
|xref=MSH:D009380;;SNOMEDCT_2010_1_31:188306000;;UMLS_CUI:C0027665;;UMLS_CUI:C0153643;;UMLS_CUI:C1334956
}}
}}

Latest revision as of 16:50, 12 September 2014

Name:nervous system cancer
Namespace:FANTOM
Definition:"An organ system cancer located_in the nervous sytem that affects the central or peripheral nervous system." [url:http://emedicine.medscape.com/oncology, url:http://en.wikipedia.org/wiki/Nervous_system_disease]
Xrefs:
links:

MSH:D009380
SNOMEDCT_2010_1_31:188306000
UMLS_CUI:C0027665
UMLS_CUI:C0153643

UMLS_CUI:C1334956
Synonyms: "malignant neoplasm of nervous system" EXACT []
"neoplasm of nervous system (disorder)" EXACT [SNOMEDCT_2005_07_31:126950007]
"nervous system neoplasm" EXACT [CSP2005:2012-5157]
"neural neoplasm" EXACT []
"neural tumor" EXACT [NCI2004_11_17:C35562]
"tumor of the nervous system" EXACT [NCI2004_11_17:C3268]
Alt_id: DOID:1193
DOID:3195
DOID:4695

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0050686(organ system cancer)



Children


is a:DOID:0060116 (sensory system cancer),DOID:1192 (peripheral nervous system neoplasm),DOID:3620 (central nervous system cancer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3093 (nervous system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.59e-50FFCP PHASE2:Hg19::chr15:36653779..36653789,-#_621b95e2aa6d0e3ab8a57a7eb86f4f0cp@chr15:36653779..36653789, -
5.59e-50FFCP PHASE1:Hg19::chr15:36653779..36653789,-#_621b95e2aa6d0e3ab8a57a7eb86f4f0cp@chr15:36653779..36653789, -
2.27e-44FFCP PHASE1:Hg19::chr7:3284005..3284016,-#_81e229f4ee7d37f6d129b14cdb1afc71p@chr7:3284005..3284016, -
2.27e-44FFCP PHASE2:Hg19::chr7:3284005..3284016,-#_81e229f4ee7d37f6d129b14cdb1afc71p@chr7:3284005..3284016, -
5.98e-34FFCP PHASE1:Hg19::chr3:130648803..130648811,-#_92a5e8f62c80dbda07a388cb0774a743p2@ENST00000504737
5.98e-34FFCP PHASE2:Hg19::chr3:130648803..130648811,-#_92a5e8f62c80dbda07a388cb0774a743p2@ENST00000504737
5.98e-34FFCP PHASE2:Hg19::chr10:54329447..54329454,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:54329447..54329454, -
5.98e-34FFCP PHASE1:Hg19::chr5:103227146..103227159,-#_92a5e8f62c80dbda07a388cb0774a743p@chr5:103227146..103227159, -
5.98e-34FFCP PHASE1:Hg19::chr18:70417659..70417666,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:70417659..70417666, -
5.98e-34FFCP PHASE2:Hg19::chr5:103227146..103227159,-#_92a5e8f62c80dbda07a388cb0774a743p@chr5:103227146..103227159, -
5.98e-34FFCP PHASE1:Hg19::chr10:28509539..28509568,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28509539..28509568, -
5.98e-34FFCP PHASE2:Hg19::chr10:28509632..28509637,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28509632..28509637, -
5.98e-34FFCP PHASE2:Hg19::chr10:54329319..54329326,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:54329319..54329326, -
5.98e-34FFCP PHASE1:Hg19::chr10:28527860..28527872,-#_92a5e8f62c80dbda07a388cb0774a743p9@MPP7
5.98e-34FFCP PHASE2:Hg19::chr18:38446239..38446249,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:38446239..38446249, -
5.98e-34FFCP PHASE1:Hg19::chr18:70417486..70417495,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:70417486..70417495, -
5.98e-34FFCP PHASE2:Hg19::chr10:28530804..28530813,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28530804..28530813, -
5.98e-34FFCP PHASE1:Hg19::chr10:28488010..28488022,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28488010..28488022, -
5.98e-34FFCP PHASE2:Hg19::chr18:70417646..70417651,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:70417646..70417651, -
5.98e-34FFCP PHASE1:Hg19::chr4:39344493..39344497,-#_92a5e8f62c80dbda07a388cb0774a743p@chr4:39344493..39344497, -
5.98e-34FFCP PHASE2:Hg19::chr4:39344493..39344497,-#_92a5e8f62c80dbda07a388cb0774a743p@chr4:39344493..39344497, -
5.98e-34FFCP PHASE1:Hg19::chr10:54329447..54329454,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:54329447..54329454, -
5.98e-34FFCP PHASE2:Hg19::chr10:28491892..28491902,-#_92a5e8f62c80dbda07a388cb0774a743p7@MPP7
5.98e-34FFCP PHASE1:Hg19::chr5:103248950..103248994,+#_92a5e8f62c80dbda07a388cb0774a743p@chr5:103248950..103248994, +
5.98e-34FFCP PHASE1:Hg19::chr18:70423377..70423388,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:70423377..70423388, -
5.98e-34FFCP PHASE2:Hg19::chr5:103248950..103248994,+#_92a5e8f62c80dbda07a388cb0774a743p@chr5:103248950..103248994, +
5.98e-34FFCP PHASE1:Hg19::chr10:28509632..28509637,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28509632..28509637, -
5.98e-34FFCP PHASE2:Hg19::chr10:28030013..28030015,+#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28030013..28030015, +
5.98e-34FFCP PHASE2:Hg19::chr10:28509658..28509676,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28509658..28509676, -
5.98e-34FFCP PHASE1:Hg19::chr10:54329319..54329326,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:54329319..54329326, -
5.98e-34FFCP PHASE2:Hg19::chr10:54329365..54329373,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:54329365..54329373, -
5.98e-34FFCP PHASE1:Hg19::chr10:28530804..28530813,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28530804..28530813, -
5.98e-34FFCP PHASE1:Hg19::chr21:26714477..26714509,+#_92a5e8f62c80dbda07a388cb0774a743p@chr21:26714477..26714509, +
5.98e-34FFCP PHASE1:Hg19::chr18:38529571..38529575,+#_92a5e8f62c80dbda07a388cb0774a743p@chr18:38529571..38529575, +
5.98e-34FFCP PHASE2:Hg19::chr21:26714477..26714509,+#_92a5e8f62c80dbda07a388cb0774a743p@chr21:26714477..26714509, +
5.98e-34FFCP PHASE2:Hg19::chr10:28530831..28530841,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28530831..28530841, -
5.98e-34FFCP PHASE1:Hg19::chr10:28491892..28491902,-#_92a5e8f62c80dbda07a388cb0774a743p7@MPP7
5.98e-34FFCP PHASE2:Hg19::chr18:70417659..70417666,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:70417659..70417666, -
5.98e-34FFCP PHASE1:Hg19::chr5:24160807..24160831,-#_92a5e8f62c80dbda07a388cb0774a743p@chr5:24160807..24160831, -
5.98e-34FFCP PHASE2:Hg19::chr5:24160807..24160831,-#_92a5e8f62c80dbda07a388cb0774a743p@chr5:24160807..24160831, -
5.98e-34FFCP PHASE1:Hg19::chr4:39344546..39344551,-#_92a5e8f62c80dbda07a388cb0774a743p@chr4:39344546..39344551, -
5.98e-34FFCP PHASE2:Hg19::chr4:39344546..39344551,-#_92a5e8f62c80dbda07a388cb0774a743p@chr4:39344546..39344551, -
5.98e-34FFCP PHASE1:Hg19::chr10:28030013..28030015,+#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28030013..28030015, +
5.98e-34FFCP PHASE1:Hg19::chr18:39739175..39739186,+#_92a5e8f62c80dbda07a388cb0774a743p@chr18:39739175..39739186, +
5.98e-34FFCP PHASE1:Hg19::chr10:28509658..28509676,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28509658..28509676, -
5.98e-34FFCP PHASE1:Hg19::chr4:176749234..176749238,+#_92a5e8f62c80dbda07a388cb0774a743p@chr4:176749234..176749238, +
5.98e-34FFCP PHASE2:Hg19::chr4:176749234..176749238,+#_92a5e8f62c80dbda07a388cb0774a743p@chr4:176749234..176749238, +
5.98e-34FFCP PHASE2:Hg19::chr18:70417486..70417495,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:70417486..70417495, -
5.98e-34FFCP PHASE1:Hg19::chr10:54329365..54329373,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:54329365..54329373, -
5.98e-34FFCP PHASE2:Hg19::chr10:54329394..54329397,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:54329394..54329397, -
5.98e-34FFCP PHASE1:Hg19::chr10:28530831..28530841,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28530831..28530841, -
5.98e-34FFCP PHASE1:Hg19::chr7:69819605..69819617,+#_92a5e8f62c80dbda07a388cb0774a743p@chr7:69819605..69819617, +
5.98e-34FFCP PHASE1:Hg19::chr18:39041105..39041117,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:39041105..39041117, -
5.98e-34FFCP PHASE2:Hg19::chr7:69819605..69819617,+#_92a5e8f62c80dbda07a388cb0774a743p@chr7:69819605..69819617, +
5.98e-34FFCP PHASE2:Hg19::chr18:38529571..38529575,+#_92a5e8f62c80dbda07a388cb0774a743p@chr18:38529571..38529575, +
5.98e-34FFCP PHASE1:Hg19::chr18:70417551..70417561,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:70417551..70417561, -
5.98e-34FFCP PHASE2:Hg19::chr18:70423377..70423388,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:70423377..70423388, -
5.98e-34FFCP PHASE1:Hg19::chr4:39344555..39344565,-#_92a5e8f62c80dbda07a388cb0774a743p@chr4:39344555..39344565, -
5.98e-34FFCP PHASE2:Hg19::chr4:39344555..39344565,-#_92a5e8f62c80dbda07a388cb0774a743p@chr4:39344555..39344565, -
5.98e-34FFCP PHASE1:Hg19::chr18:39739223..39739238,+#_92a5e8f62c80dbda07a388cb0774a743p@chr18:39739223..39739238, +
5.98e-34FFCP PHASE2:Hg19::chr18:39739175..39739186,+#_92a5e8f62c80dbda07a388cb0774a743p@chr18:39739175..39739186, +
5.98e-34FFCP PHASE2:Hg19::chr10:28033640..28033643,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28033640..28033643, -
5.98e-34FFCP PHASE1:Hg19::chr4:176749383..176749408,+#_92a5e8f62c80dbda07a388cb0774a743p@chr4:176749383..176749408, +
5.98e-34FFCP PHASE2:Hg19::chr4:176749383..176749408,+#_92a5e8f62c80dbda07a388cb0774a743p@chr4:176749383..176749408, +
5.98e-34FFCP PHASE1:Hg19::chr1:198636194..198636203,-#_92a5e8f62c80dbda07a388cb0774a743p4@ENST00000413577
5.98e-34FFCP PHASE2:Hg19::chr1:198636194..198636203,-#_92a5e8f62c80dbda07a388cb0774a743p4@ENST00000413577
5.98e-34FFCP PHASE2:Hg19::chr10:28527477..28527523,+#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28527477..28527523, +
5.98e-34FFCP PHASE1:Hg19::chr10:54329394..54329397,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:54329394..54329397, -
5.98e-34FFCP PHASE1:Hg19::chr18:39766598..39766611,+#_92a5e8f62c80dbda07a388cb0774a743p2@uc002las.1, p2@uc002lat.2, p2@uc002lau.2
5.98e-34FFCP PHASE2:Hg19::chr10:54329422..54329434,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:54329422..54329434, -
5.98e-34FFCP PHASE1:Hg19::chrY:3781821..3781829,-#_92a5e8f62c80dbda07a388cb0774a743p@chrY:3781821..3781829, -
5.98e-34FFCP PHASE2:Hg19::chrY:3781821..3781829,-#_92a5e8f62c80dbda07a388cb0774a743p@chrY:3781821..3781829, -
5.98e-34FFCP PHASE2:Hg19::chr18:39041105..39041117,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:39041105..39041117, -
5.98e-34FFCP PHASE1:Hg19::chr5:103227130..103227137,-#_92a5e8f62c80dbda07a388cb0774a743p@chr5:103227130..103227137, -
5.98e-34FFCP PHASE1:Hg19::chr18:70417646..70417651,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:70417646..70417651, -
5.98e-34FFCP PHASE2:Hg19::chr5:103227130..103227137,-#_92a5e8f62c80dbda07a388cb0774a743p@chr5:103227130..103227137, -
5.98e-34FFCP PHASE1:Hg19::chr4:176729849..176729872,+#_92a5e8f62c80dbda07a388cb0774a743p@chr4:176729849..176729872, +
5.98e-34FFCP PHASE2:Hg19::chr4:176729849..176729872,+#_92a5e8f62c80dbda07a388cb0774a743p@chr4:176729849..176729872, +
5.98e-34FFCP PHASE2:Hg19::chr10:28509539..28509568,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28509539..28509568, -
5.98e-34FFCP PHASE1:Hg19::chr10:28033640..28033643,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28033640..28033643, -
5.98e-34FFCP PHASE2:Hg19::chr18:39739223..39739238,+#_92a5e8f62c80dbda07a388cb0774a743p@chr18:39739223..39739238, +
5.98e-34FFCP PHASE1:Hg19::chr10:28527477..28527523,+#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28527477..28527523, +
5.98e-34FFCP PHASE1:Hg19::chr18:38446239..38446249,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:38446239..38446249, -
5.98e-34FFCP PHASE2:Hg19::chr10:28527860..28527872,-#_92a5e8f62c80dbda07a388cb0774a743p9@MPP7
5.98e-34FFCP PHASE2:Hg19::chr18:70417551..70417561,-#_92a5e8f62c80dbda07a388cb0774a743p@chr18:70417551..70417561, -
5.98e-34FFCP PHASE1:Hg19::chr10:54329422..54329434,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:54329422..54329434, -
5.98e-34FFCP PHASE2:Hg19::chr18:39766598..39766611,+#_92a5e8f62c80dbda07a388cb0774a743p2@uc002las.1, p2@uc002lat.2, p2@uc002lau.2
5.98e-34FFCP PHASE2:Hg19::chr10:28488010..28488022,-#_92a5e8f62c80dbda07a388cb0774a743p@chr10:28488010..28488022, -
2.01e-30FFCP PHASE2:Hg19::chr10:28367310..28367318,+#_d0adcd01f0bc12fb7c706b1d5605579dp@chr10:28367310..28367318, +
2.01e-30FFCP PHASE1:Hg19::chr10:28367310..28367318,+#_d0adcd01f0bc12fb7c706b1d5605579dp@chr10:28367310..28367318, +
2.22e-30FFCP PHASE1:Hg19::chr11:103489520..103489526,+#_e4e595f22cb7ecccf1f43588711ab6f9p@chr11:103489520..103489526, +
2.22e-30FFCP PHASE2:Hg19::chr11:103489520..103489526,+#_e4e595f22cb7ecccf1f43588711ab6f9p@chr11:103489520..103489526, +
6.82e-30FFCP PHASE1:Hg19::chr17:13444894..13444917,+#_57356e76c963553487a9b50758fe739fp@chr17:13444894..13444917, +
6.82e-30FFCP PHASE2:Hg19::chr17:13444894..13444917,+#_57356e76c963553487a9b50758fe739fp@chr17:13444894..13444917, +
1.06e-29FFCP PHASE1:Hg19::chr20:4450781..4450802,-#_5e7cf8cd38acfd6387f8e018d6cd4f25p@chr20:4450781..4450802, -
1.06e-29FFCP PHASE2:Hg19::chr20:4450781..4450802,-#_5e7cf8cd38acfd6387f8e018d6cd4f25p@chr20:4450781..4450802, -
1.66e-25FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_8f641385210b6f31092fdcf2c8e9f56ep@chr15:36653709..36653720, -
1.66e-25FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_8f641385210b6f31092fdcf2c8e9f56ep@chr15:36653709..36653720, -
1.81e-25FFCP PHASE2:Hg19::chr10:28367270..28367278,+#_8e9da5ef5308dbac264dd3fa1e7f9d4ep@chr10:28367270..28367278, +
1.81e-25FFCP PHASE1:Hg19::chr10:28367270..28367278,+#_8e9da5ef5308dbac264dd3fa1e7f9d4ep@chr10:28367270..28367278, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=DOID:3093&oldid=3275666"