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{{DOID
{{DOID
|id=DOID:5409
|alt_id=
|name=lung small cell carcinoma
|namespace=disease_ontology
|def=
|xref=MSH:D055752;;NCI:C4917;;OMIM:182280;;SNOMEDCT_2010_1_31:254632001;;SNOMEDCT_2010_1_31:254633006;;UMLS_CUI:C0149925
|is_a=DOID:3905
|synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006];;"SCLC" EXACT [CSP2005:2017-6589];;"small cell carcinoma of lung" RELATED [];;"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001];;"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
|comment=OMIM mapping confirmed by DO. [SN].
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:5409
|is_a=DOID:3905
|is_obsolete=
|located_in=
|located_in=
|name=lung small cell carcinoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006];;"SCLC" EXACT [CSP2005:2017-6589];;"small cell carcinoma of lung" RELATED [];;"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001];;"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
|union_of=
|xref=MSH:D055752;;NCI:C4917;;OMIM:182280;;SNOMEDCT_2010_1_31:254632001;;SNOMEDCT_2010_1_31:254633006;;UMLS_CUI:C0149925
}}
}}

Latest revision as of 16:52, 12 September 2014

Name:lung small cell carcinoma
Namespace:FANTOM
Xrefs:
links:

MSH:D055752
NCI:C4917
OMIM:182280
SNOMEDCT_2010_1_31:254632001
SNOMEDCT_2010_1_31:254633006

UMLS_CUI:C0149925
Synonyms: "Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006]
"SCLC" EXACT [CSP2005:2017-6589]
"small cell carcinoma of lung" RELATED []
"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001]
"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3905(lung carcinoma)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:5409 (lung small cell carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_5a0cadd9f97072f65b901942816bde31p@chr6:125378873..125378876, +
1.55e-98FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_5a0cadd9f97072f65b901942816bde31p@chr6:125378873..125378876, +
2.4e-66FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_40c90676995a138ba0819dfe8db6fb93p@chr8:40525350..40525354, -
2.4e-66FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_40c90676995a138ba0819dfe8db6fb93p@chr8:40525350..40525354, -
3.1e-50FFCP PHASE1:Hg19::chr18:37331745..37331763,-#_5be4114e7d0131f457d60e83d77a108dp@chr18:37331745..37331763, -
3.1e-50FFCP PHASE1:Hg19::chr15:62007373..62007374,-#_5be4114e7d0131f457d60e83d77a108dp2@ENST00000559590
3.1e-50FFCP PHASE2:Hg19::chr19:46531131..46531136,+#_5be4114e7d0131f457d60e83d77a108dp@chr19:46531131..46531136, +
3.1e-50FFCP PHASE2:Hg19::chr10:65821760..65821780,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:65821760..65821780, +
3.1e-50FFCP PHASE1:Hg19::chrX:97443927..97443947,+#_5be4114e7d0131f457d60e83d77a108dp@chrX:97443927..97443947, +
3.1e-50FFCP PHASE1:Hg19::chr5:79097476..79097484,+#_5be4114e7d0131f457d60e83d77a108dp@chr5:79097476..79097484, +
3.1e-50FFCP PHASE1:Hg19::chr1:199134722..199134729,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:199134722..199134729, +
3.1e-50FFCP PHASE1:Hg19::chr13:76694533..76694542,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:76694533..76694542, +
3.1e-50FFCP PHASE2:Hg19::chr13:26155734..26155742,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:26155734..26155742, +
3.1e-50FFCP PHASE1:Hg19::chr7:111234799..111234807,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:111234799..111234807, -
3.1e-50FFCP PHASE1:Hg19::chr4:185426203..185426209,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:185426203..185426209, -
3.1e-50FFCP PHASE1:Hg19::chr3:86703174..86703181,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:86703174..86703181, -
3.1e-50FFCP PHASE1:Hg19::chr2:220594730..220594748,+#_5be4114e7d0131f457d60e83d77a108dp2@ENST00000442416
3.1e-50FFCP PHASE2:Hg19::chr8:97961177..97961185,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:97961177..97961185, -
3.1e-50FFCP PHASE1:Hg19::chr1:100110851..100110860,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:100110851..100110860, +
3.1e-50FFCP PHASE2:Hg19::chr3:86703134..86703137,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:86703134..86703137, -
3.1e-50FFCP PHASE2:Hg19::chr2:220594700..220594702,+#_5be4114e7d0131f457d60e83d77a108dp6@ENST00000442416
3.1e-50FFCP PHASE2:Hg19::chr14:60194070..60194083,-#_5be4114e7d0131f457d60e83d77a108dp25@RTN1
3.1e-50FFCP PHASE1:Hg19::chr8:98070371..98070384,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98070371..98070384, -
3.1e-50FFCP PHASE2:Hg19::chr8:98065877..98065881,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98065877..98065881, -
3.1e-50FFCP PHASE2:Hg19::chr7:79840323..79840338,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:79840323..79840338, +
3.1e-50FFCP PHASE2:Hg19::chr3:186548894..186548902,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:186548894..186548902, +
3.1e-50FFCP PHASE1:Hg19::chr17:39140424..39140431,-#_5be4114e7d0131f457d60e83d77a108dp4@KRT40
3.1e-50FFCP PHASE2:Hg19::chr2:8803669..8803680,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:8803669..8803680, -
3.1e-50FFCP PHASE2:Hg19::chr21:26151976..26151979,+#_5be4114e7d0131f457d60e83d77a108dp@chr21:26151976..26151979, +
3.1e-50FFCP PHASE2:Hg19::chr13:95133382..95133389,-#_5be4114e7d0131f457d60e83d77a108dp@chr13:95133382..95133389, -
3.1e-50FFCP PHASE1:Hg19::chr4:6324309..6324314,-#_5be4114e7d0131f457d60e83d77a108dp43@PPP2R2C
3.1e-50FFCP PHASE1:Hg19::chr2:97626580..97626585,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:97626580..97626585, -
3.1e-50FFCP PHASE2:Hg19::chr15:36739964..36739979,-#_5be4114e7d0131f457d60e83d77a108dp@chr15:36739964..36739979, -
3.1e-50FFCP PHASE1:Hg19::chr6:154858693..154858698,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:154858693..154858698, +
3.1e-50FFCP PHASE2:Hg19::chr8:57526601..57526612,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:57526601..57526612, +
3.1e-50FFCP PHASE1:Hg19::chr19:46763326..46763349,+#_5be4114e7d0131f457d60e83d77a108dp@chr19:46763326..46763349, +
3.1e-50FFCP PHASE1:Hg19::chrX:69542573..69542578,+#_5be4114e7d0131f457d60e83d77a108dp@chrX:69542573..69542578, +
3.1e-50FFCP PHASE1:Hg19::chr7:26590563..26590574,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:26590563..26590574, -
3.1e-50FFCP PHASE1:Hg19::chr11:73475071..73475076,-#_5be4114e7d0131f457d60e83d77a108dp@chr11:73475071..73475076, -
3.1e-50FFCP PHASE2:Hg19::chr5:33650078..33650111,-#_5be4114e7d0131f457d60e83d77a108dp@chr5:33650078..33650111, -
3.1e-50FFCP PHASE1:Hg19::chr2:208001650..208001675,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:208001650..208001675, -
3.1e-50FFCP PHASE1:Hg19::chr2:130564567..130564572,-#_5be4114e7d0131f457d60e83d77a108dp2@LOC100131048
3.1e-50FFCP PHASE2:Hg19::chr3:78360522..78360543,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:78360522..78360543, +
3.1e-50FFCP PHASE2:Hg19::chr14:58439259..58439262,-#_5be4114e7d0131f457d60e83d77a108dp@chr14:58439259..58439262, -
3.1e-50FFCP PHASE2:Hg19::chr11:98528704..98528712,+#_5be4114e7d0131f457d60e83d77a108dp@chr11:98528704..98528712, +
3.1e-50FFCP PHASE1:Hg19::chr8:97972117..97972120,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:97972117..97972120, -
3.1e-50FFCP PHASE1:Hg19::chr5:134915254..134915270,-#_5be4114e7d0131f457d60e83d77a108dp3@CXCL14
3.1e-50FFCP PHASE2:Hg19::chr7:79765099..79765103,+#_5be4114e7d0131f457d60e83d77a108dp29@GNAI1
3.1e-50FFCP PHASE2:Hg19::chr10:129704562..129704569,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:129704562..129704569, +
3.1e-50FFCP PHASE1:Hg19::chrX:135761853..135761876,-#_5be4114e7d0131f457d60e83d77a108dp@chrX:135761853..135761876, -
3.1e-50FFCP PHASE1:Hg19::chr2:97626065..97626084,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:97626065..97626084, -
3.1e-50FFCP PHASE1:Hg19::chr10:129704382..129704389,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:129704382..129704389, +
3.1e-50FFCP PHASE2:Hg19::chr2:234862436..234862439,+#_5be4114e7d0131f457d60e83d77a108dp16@TRPM8
3.1e-50FFCP PHASE1:Hg19::chr9:129291797..129291800,-#_5be4114e7d0131f457d60e83d77a108dp@chr9:129291797..129291800, -
3.1e-50FFCP PHASE2:Hg19::chr9:129234745..129234747,-#_5be4114e7d0131f457d60e83d77a108dp@chr9:129234745..129234747, -
3.1e-50FFCP PHASE2:Hg19::chr6:141715304..141715307,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:141715304..141715307, +
3.1e-50FFCP PHASE2:Hg19::chr4:139019174..139019198,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:139019174..139019198, -
3.1e-50FFCP PHASE1:Hg19::chr14:57127856..57127863,+#_5be4114e7d0131f457d60e83d77a108dp@chr14:57127856..57127863, +
3.1e-50FFCP PHASE2:Hg19::chr18:28978481..28978484,-#_5be4114e7d0131f457d60e83d77a108dp@chr18:28978481..28978484, -
3.1e-50FFCP PHASE2:Hg19::chr2:241625621..241625629,+#_5be4114e7d0131f457d60e83d77a108dp2@ENST00000407635
3.1e-50FFCP PHASE2:Hg19::chr9:17454062..17454088,+#_5be4114e7d0131f457d60e83d77a108dp@chr9:17454062..17454088, +
3.1e-50FFCP PHASE1:Hg19::chr2:103235035..103235044,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:103235035..103235044, +
3.1e-50FFCP PHASE1:Hg19::chr15:85564362..85564385,+#_5be4114e7d0131f457d60e83d77a108dp@chr15:85564362..85564385, +
3.1e-50FFCP PHASE2:Hg19::chr14:58045730..58045732,-#_5be4114e7d0131f457d60e83d77a108dp@chr14:58045730..58045732, -
3.1e-50FFCP PHASE1:Hg19::chr5:134907210..134907215,-#_5be4114e7d0131f457d60e83d77a108dp@chr5:134907210..134907215, -
3.1e-50FFCP PHASE1:Hg19::chr3:150914241..150914244,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:150914241..150914244, +
3.1e-50FFCP PHASE1:Hg19::chr1:225650299..225650317,-#_5be4114e7d0131f457d60e83d77a108dp@chr1:225650299..225650317, -
3.1e-50FFCP PHASE1:Hg19::chr10:82723188..82723191,-#_5be4114e7d0131f457d60e83d77a108dp@chr10:82723188..82723191, -
3.1e-50FFCP PHASE2:Hg19::chr3:150914094..150914095,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:150914094..150914095, +
3.1e-50FFCP PHASE2:Hg19::chr10:129703363..129703373,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:129703363..129703373, +
3.1e-50FFCP PHASE1:Hg19::chr7:79840127..79840130,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:79840127..79840130, +
3.1e-50FFCP PHASE1:Hg19::chr12:79756320..79756329,-#_5be4114e7d0131f457d60e83d77a108dp@chr12:79756320..79756329, -
3.1e-50FFCP PHASE1:Hg19::chr16:13010590..13010593,+#_5be4114e7d0131f457d60e83d77a108dp@chr16:13010590..13010593, +
3.1e-50FFCP PHASE2:Hg19::chr2:222160774..222160804,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:222160774..222160804, +
3.1e-50FFCP PHASE2:Hg19::chr2:138685510..138685520,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:138685510..138685520, -
3.1e-50FFCP PHASE2:Hg19::chr18:74671119..74671124,+#_5be4114e7d0131f457d60e83d77a108dp@chr18:74671119..74671124, +
3.1e-50FFCP PHASE2:Hg19::chr15:97503439..97503472,+#_5be4114e7d0131f457d60e83d77a108dp@chr15:97503439..97503472, +
3.1e-50FFCP PHASE2:Hg19::chr11:42142040..42142055,+#_5be4114e7d0131f457d60e83d77a108dp@chr11:42142040..42142055, +
3.1e-50FFCP PHASE1:Hg19::chr12:27925654..27925663,-#_5be4114e7d0131f457d60e83d77a108dp@chr12:27925654..27925663, -
3.1e-50FFCP PHASE2:Hg19::chr2:97626550..97626562,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:97626550..97626562, -
3.1e-50FFCP PHASE2:Hg19::chr12:88178319..88178329,-#_5be4114e7d0131f457d60e83d77a108dp2@MKRN9P
3.1e-50FFCP PHASE1:Hg19::chr7:95775942..95775990,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:95775942..95775990, -
3.1e-50FFCP PHASE1:Hg19::chr5:28571958..28571968,-#_5be4114e7d0131f457d60e83d77a108dp@chr5:28571958..28571968, -
3.1e-50FFCP PHASE1:Hg19::chr3:102635409..102635414,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:102635409..102635414, -
3.1e-50FFCP PHASE2:Hg19::chrX:48394285..48394295,+#_5be4114e7d0131f457d60e83d77a108dp@chrX:48394285..48394295, +
3.1e-50FFCP PHASE1:Hg19::chr1:81686906..81686911,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:81686906..81686911, +
3.1e-50FFCP PHASE1:Hg19::chr10:29213612..29213644,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:29213612..29213644, +
3.1e-50FFCP PHASE1:Hg19::chr2:192805223..192805230,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:192805223..192805230, +
3.1e-50FFCP PHASE1:Hg19::chr18:39798771..39798780,-#_5be4114e7d0131f457d60e83d77a108dp@chr18:39798771..39798780, -
3.1e-50FFCP PHASE2:Hg19::chr2:189756256..189756260,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:189756256..189756260, +
3.1e-50FFCP PHASE2:Hg19::chr11:73475071..73475076,-#_5be4114e7d0131f457d60e83d77a108dp@chr11:73475071..73475076, -
3.1e-50FFCP PHASE1:Hg19::chr8:116215298..116215305,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:116215298..116215305, +
3.1e-50FFCP PHASE1:Hg19::chr7:44574327..44574332,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:44574327..44574332, -
3.1e-50FFCP PHASE1:Hg19::chr13:92571088..92571098,-#_5be4114e7d0131f457d60e83d77a108dp@chr13:92571088..92571098, -
3.1e-50FFCP PHASE2:Hg19::chr16:7428243..7428259,+#_5be4114e7d0131f457d60e83d77a108dp@chr16:7428243..7428259, +
3.1e-50FFCP PHASE1:Hg19::chr7:120381610..120381618,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:120381610..120381618, +
3.1e-50FFCP PHASE2:Hg19::chr9:95426545..95426559,-#_5be4114e7d0131f457d60e83d77a108dp@chr9:95426545..95426559, -
3.1e-50FFCP PHASE2:Hg19::chr7:120378742..120378768,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:120378742..120378768, -
3.1e-50FFCP PHASE1:Hg19::chr2:135120480..135120481,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:135120480..135120481, +
3.1e-50FFCP PHASE1:Hg19::chr18:6928495..6928520,-#_5be4114e7d0131f457d60e83d77a108dp2@LOC400643

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